data_3QKV # _model_server_result.job_id smOfdcsNMcditqVKtMNX9Q _model_server_result.datetime_utc '2025-03-29 05:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":580}' # _entry.id 3QKV # _exptl.entry_id 3QKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.175 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6-bromo-1'H,4H-spiro[1,3-benzodioxine-2,4'-piperidin]-1'-yl)methanol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QKV _cell.length_a 90.82 _cell.length_b 104.08 _cell.length_c 147.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 249 A SER 241 1_555 C C1 QKV . A QKV 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B OG SER 249 B SER 241 1_555 D C1 QKV . B QKV 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C13 H16 Br N O3' _chem_comp.formula_weight 314.175 _chem_comp.id QKV _chem_comp.mon_nstd_flag . _chem_comp.name "(6-bromo-1'H,4H-spiro[1,3-benzodioxine-2,4'-piperidin]-1'-yl)methanol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N1 QKV sing 275 n n N1 C1 QKV sing 276 n n N1 C9 QKV sing 277 n n C13 C4 QKV doub 278 n y O1 C4 QKV sing 279 n n C4 C3 QKV sing 280 n y C5 C2 QKV sing 281 n n C5 C9 QKV sing 282 n n C5 H5 QKV sing 283 n n C5 H5A QKV sing 284 n n C8 C6 QKV sing 285 n n C6 C2 QKV sing 286 n n C6 H6 QKV sing 287 n n C6 H6A QKV sing 288 n n C8 H8 QKV sing 289 n n C8 H8A QKV sing 290 n n C3 C10 QKV sing 291 n n O2 C10 QKV sing 292 n n C10 H10 QKV sing 293 n n C10 H10A QKV sing 294 n n C13 C15 QKV sing 295 n y C13 H13 QKV sing 296 n n C15 C14 QKV doub 297 n y C15 H15 QKV sing 298 n n C14 BR1 QKV sing 299 n n C14 C11 QKV sing 300 n y C3 C11 QKV doub 301 n y C11 H11 QKV sing 302 n n O1 C2 QKV sing 303 n n C2 O2 QKV sing 304 n n C9 H9 QKV sing 305 n n C9 H9A QKV sing 306 n n C1 O3 QKV sing 307 n n C1 H1 QKV sing 308 n n C1 H1A QKV sing 309 n n O3 HO3 QKV sing 310 n n # _atom_sites.entry_id 3QKV _atom_sites.fract_transf_matrix[1][1] 0.011011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QKV A 1 580 1 QKV QKV . D 2 QKV B 1 580 1 QKV QKV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QKV . . . C 2 -8.731 -6.095 -1.745 1 34.48 ? N1 QKV 580 A 1 HETATM 2 C C4 QKV . . . C 2 -12.134 -2.469 -3.271 1 37.43 ? C4 QKV 580 A 1 HETATM 3 C C5 QKV . . . C 2 -10.795 -5.299 -2.694 1 35.72 ? C5 QKV 580 A 1 HETATM 4 C C6 QKV . . . C 2 -9.029 -3.71 -1.806 1 35.69 ? C6 QKV 580 A 1 HETATM 5 C C8 QKV . . . C 2 -8.824 -4.915 -0.887 1 34.94 ? C8 QKV 580 A 1 HETATM 6 C C10 QKV . . . C 2 -10.733 -3.444 -5.118 1 37.13 ? C10 QKV 580 A 1 HETATM 7 C C13 QKV . . . C 2 -13.247 -1.764 -2.816 1 37.8 ? C13 QKV 580 A 1 HETATM 8 C C15 QKV . . . C 2 -14.172 -1.266 -3.732 1 38.35 ? C15 QKV 580 A 1 HETATM 9 BR BR1 QKV . . . C 2 -15.232 -0.794 -6.341 1 40.1 ? BR1 QKV 580 A 1 HETATM 10 C C14 QKV . . . C 2 -13.979 -1.472 -5.098 1 38.62 ? C14 QKV 580 A 1 HETATM 11 C C3 QKV . . . C 2 -11.942 -2.673 -4.633 1 37.54 ? C3 QKV 580 A 1 HETATM 12 C C11 QKV . . . C 2 -12.865 -2.177 -5.551 1 38.16 ? C11 QKV 580 A 1 HETATM 13 O O1 QKV . . . C 2 -11.224 -2.961 -2.369 1 36.77 ? O1 QKV 580 A 1 HETATM 14 C C2 QKV . . . C 2 -10.208 -3.884 -2.764 1 36.16 ? C2 QKV 580 A 1 HETATM 15 O O2 QKV . . . C 2 -9.742 -3.589 -4.09 1 36.53 ? O2 QKV 580 A 1 HETATM 16 C C9 QKV . . . C 2 -9.741 -6.401 -2.754 1 34.95 ? C9 QKV 580 A 1 HETATM 17 C C1 QKV . . . C 2 -7.605 -7.002 -1.595 1 32.8 ? C1 QKV 580 A 1 HETATM 18 O O3 QKV . . . C 2 -6.654 -6.752 -2.637 1 33.38 ? O3 QKV 580 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 18 #