data_3QL3 # _model_server_result.job_id zvi6EHANWPV-nR50jWxIdg _model_server_result.datetime_utc '2025-02-17 10:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ql3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":160}' # _entry.id 3QL3 # _exptl.entry_id 3QL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QL3 _cell.length_a 34.32 _cell.length_b 45.51 _cell.length_c 98.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 70 A ASP 70 1_555 E MN MN . A MN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 162 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 162 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 D MN MN . A MN 162 1_555 F O HOH . A HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 3QL3 _atom_sites.fract_transf_matrix[1][1] 0.029138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 161 161 FOL FOL . C 3 NAP A 1 160 1 NAP NAP . D 4 MN A 1 162 1 MN MN . E 4 MN A 1 163 2 MN MN . F 5 HOH A 1 164 1 HOH HOH . F 5 HOH A 2 165 2 HOH HOH . F 5 HOH A 3 166 3 HOH HOH . F 5 HOH A 4 167 4 HOH HOH . F 5 HOH A 5 168 5 HOH HOH . F 5 HOH A 6 169 6 HOH HOH . F 5 HOH A 7 170 7 HOH HOH . F 5 HOH A 8 171 8 HOH HOH . F 5 HOH A 9 172 9 HOH HOH . F 5 HOH A 10 173 10 HOH HOH . F 5 HOH A 11 174 12 HOH HOH . F 5 HOH A 12 175 13 HOH HOH . F 5 HOH A 13 176 14 HOH HOH . F 5 HOH A 14 177 15 HOH HOH . F 5 HOH A 15 178 16 HOH HOH . F 5 HOH A 16 179 17 HOH HOH . F 5 HOH A 17 180 18 HOH HOH . F 5 HOH A 18 181 19 HOH HOH . F 5 HOH A 19 182 20 HOH HOH . F 5 HOH A 20 183 21 HOH HOH . F 5 HOH A 21 184 22 HOH HOH . F 5 HOH A 22 185 23 HOH HOH . F 5 HOH A 23 186 24 HOH HOH . F 5 HOH A 24 187 25 HOH HOH . F 5 HOH A 25 188 26 HOH HOH . F 5 HOH A 26 189 27 HOH HOH . F 5 HOH A 27 190 28 HOH HOH . F 5 HOH A 28 191 29 HOH HOH . F 5 HOH A 29 192 30 HOH HOH . F 5 HOH A 30 193 31 HOH HOH . F 5 HOH A 31 194 32 HOH HOH . F 5 HOH A 32 195 33 HOH HOH . F 5 HOH A 33 196 34 HOH HOH . F 5 HOH A 34 197 35 HOH HOH . F 5 HOH A 35 198 36 HOH HOH . F 5 HOH A 36 199 37 HOH HOH . F 5 HOH A 37 200 38 HOH HOH . F 5 HOH A 38 201 39 HOH HOH . F 5 HOH A 39 202 40 HOH HOH . F 5 HOH A 40 203 41 HOH HOH . F 5 HOH A 41 204 42 HOH HOH . F 5 HOH A 42 205 43 HOH HOH . F 5 HOH A 43 206 44 HOH HOH . F 5 HOH A 44 207 45 HOH HOH . F 5 HOH A 45 208 46 HOH HOH . F 5 HOH A 46 209 47 HOH HOH . F 5 HOH A 47 210 48 HOH HOH . F 5 HOH A 48 211 49 HOH HOH . F 5 HOH A 49 212 50 HOH HOH . F 5 HOH A 50 213 51 HOH HOH . F 5 HOH A 51 214 52 HOH HOH . F 5 HOH A 52 215 53 HOH HOH . F 5 HOH A 53 216 54 HOH HOH . F 5 HOH A 54 217 55 HOH HOH . F 5 HOH A 55 218 56 HOH HOH . F 5 HOH A 56 219 57 HOH HOH . F 5 HOH A 57 220 58 HOH HOH . F 5 HOH A 58 221 59 HOH HOH . F 5 HOH A 59 222 60 HOH HOH . F 5 HOH A 60 223 61 HOH HOH . F 5 HOH A 61 224 62 HOH HOH . F 5 HOH A 62 225 63 HOH HOH . F 5 HOH A 63 226 64 HOH HOH . F 5 HOH A 64 227 65 HOH HOH . F 5 HOH A 65 228 66 HOH HOH . F 5 HOH A 66 229 67 HOH HOH . F 5 HOH A 67 230 68 HOH HOH . F 5 HOH A 68 231 69 HOH HOH . F 5 HOH A 69 232 70 HOH HOH . F 5 HOH A 70 233 72 HOH HOH . F 5 HOH A 71 234 73 HOH HOH . F 5 HOH A 72 235 75 HOH HOH . F 5 HOH A 73 236 76 HOH HOH . F 5 HOH A 74 237 77 HOH HOH . F 5 HOH A 75 238 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 4.574 8.368 -15.586 1 12.49 ? PA NAP 160 A 1 HETATM 2 O O1A NAP . . . C 3 5.682 7.887 -16.442 1 12.47 ? O1A NAP 160 A 1 HETATM 3 O O2A NAP . . . C 3 4.176 7.568 -14.393 1 11.98 ? O2A NAP 160 A 1 HETATM 4 O O5B NAP . . . C 3 4.865 9.824 -15.033 1 13.79 ? O5B NAP 160 A 1 HETATM 5 C C5B NAP . . . C 3 5.257 10.863 -15.969 1 12.89 ? C5B NAP 160 A 1 HETATM 6 C C4B NAP . . . C 3 5.744 12.046 -15.129 1 12.61 ? C4B NAP 160 A 1 HETATM 7 O O4B NAP . . . C 3 6.894 11.668 -14.383 1 12.44 ? O4B NAP 160 A 1 HETATM 8 C C3B NAP . . . C 3 6.159 13.279 -15.944 1 14.83 ? C3B NAP 160 A 1 HETATM 9 O O3B NAP . . . C 3 5.057 14.072 -16.328 1 15.87 ? O3B NAP 160 A 1 HETATM 10 C C2B NAP . . . C 3 7.046 13.974 -14.93 1 14.86 ? C2B NAP 160 A 1 HETATM 11 O O2B NAP . . . C 3 6.289 14.602 -13.906 1 15.1 ? O2B NAP 160 A 1 HETATM 12 C C1B NAP . . . C 3 7.769 12.78 -14.295 1 13.41 ? C1B NAP 160 A 1 HETATM 13 N N9A NAP . . . C 3 9.035 12.504 -14.959 1 13.2 ? N9A NAP 160 A 1 HETATM 14 C C8A NAP . . . C 3 9.301 11.508 -15.871 1 14.32 ? C8A NAP 160 A 1 HETATM 15 N N7A NAP . . . C 3 10.601 11.579 -16.249 1 13.44 ? N7A NAP 160 A 1 HETATM 16 C C5A NAP . . . C 3 11.184 12.615 -15.585 1 12.87 ? C5A NAP 160 A 1 HETATM 17 C C6A NAP . . . C 3 12.488 13.122 -15.59 1 14.71 ? C6A NAP 160 A 1 HETATM 18 N N6A NAP . . . C 3 13.432 12.582 -16.344 1 12.26 ? N6A NAP 160 A 1 HETATM 19 N N1A NAP . . . C 3 12.776 14.227 -14.798 1 13.15 ? N1A NAP 160 A 1 HETATM 20 C C2A NAP . . . C 3 11.78 14.798 -14.014 1 13.76 ? C2A NAP 160 A 1 HETATM 21 N N3A NAP . . . C 3 10.483 14.292 -13.986 1 13.08 ? N3A NAP 160 A 1 HETATM 22 C C4A NAP . . . C 3 10.201 13.22 -14.778 1 12.81 ? C4A NAP 160 A 1 HETATM 23 O O3 NAP . . . C 3 3.321 8.714 -16.554 1 12.2 ? O3 NAP 160 A 1 HETATM 24 P PN NAP . . . C 3 2.631 7.905 -17.767 1 15.03 ? PN NAP 160 A 1 HETATM 25 O O1N NAP . . . C 3 1.41 8.686 -18.091 1 14.32 ? O1N NAP 160 A 1 HETATM 26 O O2N NAP . . . C 3 3.624 7.628 -18.842 1 11.03 ? O2N NAP 160 A 1 HETATM 27 O O5D NAP . . . C 3 2.175 6.541 -17.051 1 13.74 ? O5D NAP 160 A 1 HETATM 28 C C5D NAP . . . C 3 1.07 6.486 -16.162 1 13.59 ? C5D NAP 160 A 1 HETATM 29 C C4D NAP . . . C 3 0.156 5.385 -16.678 1 14.8 ? C4D NAP 160 A 1 HETATM 30 O O4D NAP . . . C 3 0.878 4.148 -16.629 1 12.97 ? O4D NAP 160 A 1 HETATM 31 C C3D NAP . . . C 3 -1.133 5.13 -15.861 1 14.56 ? C3D NAP 160 A 1 HETATM 32 O O3D NAP . . . C 3 -2.154 4.679 -16.75 1 14.22 ? O3D NAP 160 A 1 HETATM 33 C C2D NAP . . . C 3 -0.733 4.017 -14.903 1 13.52 ? C2D NAP 160 A 1 HETATM 34 O O2D NAP . . . C 3 -1.805 3.265 -14.372 1 14.33 ? O2D NAP 160 A 1 HETATM 35 C C1D NAP . . . C 3 0.15 3.203 -15.835 1 13.25 ? C1D NAP 160 A 1 HETATM 36 N N1N NAP . . . C 3 1.094 2.236 -15.233 1 11.87 ? N1N NAP 160 A 1 HETATM 37 C C2N NAP . . . C 3 0.942 0.918 -15.553 1 11.08 ? C2N NAP 160 A 1 HETATM 38 C C3N NAP . . . C 3 1.832 -0.028 -15.066 1 12.44 ? C3N NAP 160 A 1 HETATM 39 C C7N NAP . . . C 3 1.683 -1.481 -15.415 1 14.7 ? C7N NAP 160 A 1 HETATM 40 O O7N NAP . . . C 3 2.682 -2.345 -15.014 1 15.71 ? O7N NAP 160 A 1 HETATM 41 N N7N NAP . . . C 3 0.632 -1.96 -16.078 1 14.5 ? N7N NAP 160 A 1 HETATM 42 C C4N NAP . . . C 3 2.868 0.403 -14.251 1 11.59 ? C4N NAP 160 A 1 HETATM 43 C C5N NAP . . . C 3 2.999 1.757 -13.932 1 13.46 ? C5N NAP 160 A 1 HETATM 44 C C6N NAP . . . C 3 2.098 2.674 -14.439 1 13.65 ? C6N NAP 160 A 1 HETATM 45 P P2B NAP . . . C 3 5.985 16.225 -13.881 1 15.49 ? P2B NAP 160 A 1 HETATM 46 O O1X NAP . . . C 3 7.321 16.856 -14.209 1 15.23 ? O1X NAP 160 A 1 HETATM 47 O O2X NAP . . . C 3 5.486 16.547 -12.511 1 15.87 ? O2X NAP 160 A 1 HETATM 48 O O3X NAP . . . C 3 4.913 16.508 -14.9 1 15.5 ? O3X NAP 160 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #