data_3QL3 # _model_server_result.job_id eSwa-8tKA2Og1Nx3BjTIsA _model_server_result.datetime_utc '2025-02-17 10:53:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ql3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":163}' # _entry.id 3QL3 # _exptl.entry_id 3QL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QL3 _cell.length_a 34.32 _cell.length_b 45.51 _cell.length_c 98.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 70 A ASP 70 1_555 E MN MN . A MN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 162 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 162 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 D MN MN . A MN 162 1_555 F O HOH . A HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QL3 _atom_sites.fract_transf_matrix[1][1] 0.029138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 161 161 FOL FOL . C 3 NAP A 1 160 1 NAP NAP . D 4 MN A 1 162 1 MN MN . E 4 MN A 1 163 2 MN MN . F 5 HOH A 1 164 1 HOH HOH . F 5 HOH A 2 165 2 HOH HOH . F 5 HOH A 3 166 3 HOH HOH . F 5 HOH A 4 167 4 HOH HOH . F 5 HOH A 5 168 5 HOH HOH . F 5 HOH A 6 169 6 HOH HOH . F 5 HOH A 7 170 7 HOH HOH . F 5 HOH A 8 171 8 HOH HOH . F 5 HOH A 9 172 9 HOH HOH . F 5 HOH A 10 173 10 HOH HOH . F 5 HOH A 11 174 12 HOH HOH . F 5 HOH A 12 175 13 HOH HOH . F 5 HOH A 13 176 14 HOH HOH . F 5 HOH A 14 177 15 HOH HOH . F 5 HOH A 15 178 16 HOH HOH . F 5 HOH A 16 179 17 HOH HOH . F 5 HOH A 17 180 18 HOH HOH . F 5 HOH A 18 181 19 HOH HOH . F 5 HOH A 19 182 20 HOH HOH . F 5 HOH A 20 183 21 HOH HOH . F 5 HOH A 21 184 22 HOH HOH . F 5 HOH A 22 185 23 HOH HOH . F 5 HOH A 23 186 24 HOH HOH . F 5 HOH A 24 187 25 HOH HOH . F 5 HOH A 25 188 26 HOH HOH . F 5 HOH A 26 189 27 HOH HOH . F 5 HOH A 27 190 28 HOH HOH . F 5 HOH A 28 191 29 HOH HOH . F 5 HOH A 29 192 30 HOH HOH . F 5 HOH A 30 193 31 HOH HOH . F 5 HOH A 31 194 32 HOH HOH . F 5 HOH A 32 195 33 HOH HOH . F 5 HOH A 33 196 34 HOH HOH . F 5 HOH A 34 197 35 HOH HOH . F 5 HOH A 35 198 36 HOH HOH . F 5 HOH A 36 199 37 HOH HOH . F 5 HOH A 37 200 38 HOH HOH . F 5 HOH A 38 201 39 HOH HOH . F 5 HOH A 39 202 40 HOH HOH . F 5 HOH A 40 203 41 HOH HOH . F 5 HOH A 41 204 42 HOH HOH . F 5 HOH A 42 205 43 HOH HOH . F 5 HOH A 43 206 44 HOH HOH . F 5 HOH A 44 207 45 HOH HOH . F 5 HOH A 45 208 46 HOH HOH . F 5 HOH A 46 209 47 HOH HOH . F 5 HOH A 47 210 48 HOH HOH . F 5 HOH A 48 211 49 HOH HOH . F 5 HOH A 49 212 50 HOH HOH . F 5 HOH A 50 213 51 HOH HOH . F 5 HOH A 51 214 52 HOH HOH . F 5 HOH A 52 215 53 HOH HOH . F 5 HOH A 53 216 54 HOH HOH . F 5 HOH A 54 217 55 HOH HOH . F 5 HOH A 55 218 56 HOH HOH . F 5 HOH A 56 219 57 HOH HOH . F 5 HOH A 57 220 58 HOH HOH . F 5 HOH A 58 221 59 HOH HOH . F 5 HOH A 59 222 60 HOH HOH . F 5 HOH A 60 223 61 HOH HOH . F 5 HOH A 61 224 62 HOH HOH . F 5 HOH A 62 225 63 HOH HOH . F 5 HOH A 63 226 64 HOH HOH . F 5 HOH A 64 227 65 HOH HOH . F 5 HOH A 65 228 66 HOH HOH . F 5 HOH A 66 229 67 HOH HOH . F 5 HOH A 67 230 68 HOH HOH . F 5 HOH A 68 231 69 HOH HOH . F 5 HOH A 69 232 70 HOH HOH . F 5 HOH A 70 233 72 HOH HOH . F 5 HOH A 71 234 73 HOH HOH . F 5 HOH A 72 235 75 HOH HOH . F 5 HOH A 73 236 76 HOH HOH . F 5 HOH A 74 237 77 HOH HOH . F 5 HOH A 75 238 78 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.409 _atom_site.Cartn_y 18.419 _atom_site.Cartn_z 4.973 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 163 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #