data_3QLB # _model_server_result.job_id 6v0DzNMm2upgKcEk1UBZng _model_server_result.datetime_utc '2024-10-19 11:52:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 3QLB # _exptl.entry_id 3QLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.248 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ENANTIO-PYOCHELIN FE(III)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLB _cell.length_a 155.07 _cell.length_b 170.83 _cell.length_c 232.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 727 A CYS 677 1_555 A SG CYS 732 A CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 727 B CYS 677 1_555 B SG CYS 732 B CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 D O2 CIT . A CIT 700 1_555 E FE3 EFE . A EFE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc2 D O4 CIT . A CIT 700 1_555 E FE3 EFE . A EFE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 G O2 CIT . B CIT 700 1_555 H FE3 EFE . B EFE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 G O4 CIT . B CIT 700 1_555 H FE3 EFE . B EFE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'C14 H14 Fe N2 O3 S2 2' _chem_comp.formula_weight 378.248 _chem_comp.id EFE _chem_comp.mon_nstd_flag . _chem_comp.name 'ENANTIO-PYOCHELIN FE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EFE sing 103 n n C1 C2 EFE doub 104 n y C1 C6 EFE sing 105 n y N1 FE3 EFE sing 106 n n N1 C12 EFE doub 107 n n N1 C14 EFE sing 108 n n O1 FE3 EFE sing 109 n n S1 C12 EFE sing 110 n n S1 C13 EFE sing 111 n n C2 C3 EFE sing 112 n y N2 FE3 EFE sing 113 n n N2 C15 EFE sing 114 n n N2 C17 EFE sing 115 n n N2 C18 EFE sing 116 n n S2 C15 EFE sing 117 n n S2 C16 EFE sing 118 n n C3 C4 EFE doub 119 n n FE3 O21 EFE sing 120 n y C4 C5 EFE sing 121 n n C5 C6 EFE doub 122 n n C6 C12 EFE sing 123 n y C13 C14 EFE sing 124 n n C14 C15 EFE sing 125 n y C16 C17 EFE sing 126 n n C17 C19 EFE sing 127 n n C19 O20 EFE doub 128 n n C19 O21 EFE sing 129 n n C2 H2 EFE sing 130 n n C3 H3 EFE sing 131 n n C4 H4 EFE sing 132 n n C5 H5 EFE sing 133 n n C13 H13 EFE sing 134 n n C13 H13A EFE sing 135 n n C14 H14 EFE sing 136 n n C15 H15 EFE sing 137 n n C16 H16 EFE sing 138 n n C16 H16A EFE sing 139 n n C17 H17 EFE sing 140 n n C18 H18 EFE sing 141 n n C18 H18A EFE sing 142 n n C18 H18B EFE sing 143 n n # _atom_sites.entry_id 3QLB _atom_sites.fract_transf_matrix[1][1] 0.006449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 699 1 SO4 SO4 . D 3 CIT A 1 700 1 CIT EPC . E 4 EFE A 1 701 1 EFE EPC . F 2 SO4 B 1 699 2 SO4 SO4 . G 3 CIT B 1 700 2 CIT EPC . H 4 EFE B 1 701 2 EFE EPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EFE . . . E 4 61.83 -14.448 -12.898 1 61.77 ? C1 EFE 701 A 1 HETATM 2 N N1 EFE . . . E 4 62.464 -16.57 -10.852 1 63.78 ? N1 EFE 701 A 1 HETATM 3 O O1 EFE . . . E 4 60.756 -15.243 -12.69 1 64.32 ? O1 EFE 701 A 1 HETATM 4 S S1 EFE . . . E 4 64.945 -15.91 -10.659 1 61.69 ? S1 EFE 701 A 1 HETATM 5 C C2 EFE . . . E 4 61.671 -13.383 -13.765 1 60.82 ? C2 EFE 701 A 1 HETATM 6 N N2 EFE . . . E 4 60.864 -17.91 -9.881 1 64.43 ? N2 EFE 701 A 1 HETATM 7 S S2 EFE . . . E 4 62.367 -19.621 -8.423 1 61.58 ? S2 EFE 701 A 1 HETATM 8 C C3 EFE . . . E 4 62.724 -12.519 -13.994 1 59.98 ? C3 EFE 701 A 1 HETATM 9 FE FE3 EFE . . . E 4 60.555 -16.371 -11.125 1 64.92 3 FE3 EFE 701 A 1 HETATM 10 C C4 EFE . . . E 4 63.932 -12.727 -13.351 1 59.94 ? C4 EFE 701 A 1 HETATM 11 C C5 EFE . . . E 4 64.09 -13.793 -12.475 1 60.62 ? C5 EFE 701 A 1 HETATM 12 C C6 EFE . . . E 4 63.042 -14.668 -12.24 1 61.67 ? C6 EFE 701 A 1 HETATM 13 C C12 EFE . . . E 4 63.32 -15.726 -11.311 1 62.43 ? C12 EFE 701 A 1 HETATM 14 C C13 EFE . . . E 4 64.537 -17.496 -9.903 1 62.5 ? C13 EFE 701 A 1 HETATM 15 C C14 EFE . . . E 4 63.065 -17.711 -10.254 1 63.35 ? C14 EFE 701 A 1 HETATM 16 C C15 EFE . . . E 4 62.093 -17.952 -9.101 1 63.55 ? C15 EFE 701 A 1 HETATM 17 C C16 EFE . . . E 4 61.387 -20.365 -9.745 1 62.91 ? C16 EFE 701 A 1 HETATM 18 C C17 EFE . . . E 4 60.527 -19.266 -10.41 1 64.37 ? C17 EFE 701 A 1 HETATM 19 C C18 EFE . . . E 4 59.731 -17.378 -9.113 1 64.92 ? C18 EFE 701 A 1 HETATM 20 C C19 EFE . . . E 4 60.985 -19.19 -11.804 1 65.05 ? C19 EFE 701 A 1 HETATM 21 O O20 EFE . . . E 4 61.502 -20.227 -12.463 1 65.07 ? O20 EFE 701 A 1 HETATM 22 O O21 EFE . . . E 4 60.863 -17.876 -12.342 1 64.93 ? O21 EFE 701 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #