data_3QLF # _model_server_result.job_id LBJtWShN-80NqNlVN4Nv-w _model_server_result.datetime_utc '2024-11-05 00:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3QLF # _exptl.entry_id 3QLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.48 _cell.angle_beta 90.09 _cell.angle_gamma 89.41 _cell.entry_id 3QLF _cell.length_a 42.268 _cell.length_b 63.495 _cell.length_c 73.451 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H20 F3 N7 O' _chem_comp.formula_weight 455.436 _chem_comp.id PD5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-(4-(4-amino-1-isopropyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)phenyl)-3-(3-(trifluoromethyl)phenyl)urea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NBF C4 PD5 sing 237 n y N3 C4 PD5 doub 238 n y C4 C5 PD5 sing 239 n y CBB C5 PD5 sing 240 n y C5 C6 PD5 doub 241 n y N1 C6 PD5 sing 242 n y C6 NAC PD5 sing 243 n n C2 N1 PD5 doub 244 n y N3 C2 PD5 sing 245 n y CBE CAA PD5 sing 246 n n CAA HAA PD5 sing 247 n n CAA HAAA PD5 sing 248 n n CAA HAAB PD5 sing 249 n n CAB CBE PD5 sing 250 n n CBE NBF PD5 sing 251 n n CBE HBE PD5 sing 252 n n CAB HAB PD5 sing 253 n n CAB HABA PD5 sing 254 n n CAB HABB PD5 sing 255 n n NBF NAS PD5 sing 256 n y NAS CBB PD5 doub 257 n y C2 H2 PD5 sing 258 n n NAC HNAC PD5 sing 259 n n NAC HNAA PD5 sing 260 n n CBB CAZ PD5 sing 261 n y CAN CAZ PD5 doub 262 n y CAZ CAO PD5 sing 263 n y CAO CAM PD5 doub 264 n y CAO HAO PD5 sing 265 n n CAX CAM PD5 sing 266 n y CAM HAM PD5 sing 267 n n CAN CAL PD5 sing 268 n y CAN HAN PD5 sing 269 n n CAL CAX PD5 doub 270 n y CAL HAL PD5 sing 271 n n CAX NAT PD5 sing 272 n n CAV NAT PD5 sing 273 n n NAT HNAT PD5 sing 274 n n OAD CAV PD5 doub 275 n n CAV NAU PD5 sing 276 n n CAY NAU PD5 sing 277 n n NAU HNAU PD5 sing 278 n n CAP CAY PD5 doub 279 n y CAY CAJ PD5 sing 280 n y CBA CAP PD5 sing 281 n y CAP HAP PD5 sing 282 n n CAH CAJ PD5 doub 283 n y CAJ HAJ PD5 sing 284 n n CAK CAH PD5 sing 285 n y CAH HAH PD5 sing 286 n n CBA CAK PD5 doub 287 n y CAK HAK PD5 sing 288 n n CBG CBA PD5 sing 289 n n FAG CBG PD5 sing 290 n n FAE CBG PD5 sing 291 n n CBG FAF PD5 sing 292 n n # _atom_sites.entry_id 3QLF _atom_sites.fract_transf_matrix[1][1] 0.023659 _atom_sites.fract_transf_matrix[1][2] -0.000244 _atom_sites.fract_transf_matrix[1][3] 0.000083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01575 _atom_sites.fract_transf_matrix[2][3] -0.002925 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PD5 A 1 601 601 PD5 PD5 . D 2 PD5 B 1 601 601 PD5 PD5 . E 3 HOH A 1 701 1 HOH HOH . E 3 HOH A 2 702 3 HOH HOH . E 3 HOH A 3 703 4 HOH HOH . E 3 HOH A 4 704 6 HOH HOH . E 3 HOH A 5 705 8 HOH HOH . E 3 HOH A 6 706 11 HOH HOH . E 3 HOH A 7 707 13 HOH HOH . E 3 HOH A 8 708 14 HOH HOH . E 3 HOH A 9 709 17 HOH HOH . E 3 HOH A 10 710 19 HOH HOH . E 3 HOH A 11 711 21 HOH HOH . E 3 HOH A 12 712 22 HOH HOH . E 3 HOH A 13 713 24 HOH HOH . E 3 HOH A 14 714 27 HOH HOH . E 3 HOH A 15 715 28 HOH HOH . E 3 HOH A 16 716 29 HOH HOH . E 3 HOH A 17 717 32 HOH HOH . E 3 HOH A 18 718 33 HOH HOH . E 3 HOH A 19 719 35 HOH HOH . E 3 HOH A 20 720 36 HOH HOH . E 3 HOH A 21 721 37 HOH HOH . E 3 HOH A 22 722 39 HOH HOH . E 3 HOH A 23 723 42 HOH HOH . E 3 HOH A 24 724 45 HOH HOH . E 3 HOH A 25 725 46 HOH HOH . E 3 HOH A 26 726 50 HOH HOH . E 3 HOH A 27 727 56 HOH HOH . E 3 HOH A 28 728 57 HOH HOH . E 3 HOH A 29 729 61 HOH HOH . E 3 HOH A 30 730 62 HOH HOH . E 3 HOH A 31 731 63 HOH HOH . E 3 HOH A 32 732 65 HOH HOH . E 3 HOH A 33 733 67 HOH HOH . E 3 HOH A 34 734 68 HOH HOH . E 3 HOH A 35 735 70 HOH HOH . E 3 HOH A 36 736 75 HOH HOH . E 3 HOH A 37 737 76 HOH HOH . E 3 HOH A 38 738 78 HOH HOH . E 3 HOH A 39 739 79 HOH HOH . E 3 HOH A 40 740 80 HOH HOH . E 3 HOH A 41 741 81 HOH HOH . E 3 HOH A 42 742 82 HOH HOH . E 3 HOH A 43 743 90 HOH HOH . E 3 HOH A 44 744 91 HOH HOH . E 3 HOH A 45 745 97 HOH HOH . E 3 HOH A 46 746 101 HOH HOH . E 3 HOH A 47 747 102 HOH HOH . E 3 HOH A 48 748 103 HOH HOH . E 3 HOH A 49 749 104 HOH HOH . E 3 HOH A 50 750 109 HOH HOH . E 3 HOH A 51 751 111 HOH HOH . E 3 HOH A 52 752 112 HOH HOH . E 3 HOH A 53 753 113 HOH HOH . E 3 HOH A 54 754 114 HOH HOH . E 3 HOH A 55 755 115 HOH HOH . F 3 HOH B 1 701 2 HOH HOH . F 3 HOH B 2 702 5 HOH HOH . F 3 HOH B 3 703 7 HOH HOH . F 3 HOH B 4 704 9 HOH HOH . F 3 HOH B 5 705 10 HOH HOH . F 3 HOH B 6 706 12 HOH HOH . F 3 HOH B 7 707 15 HOH HOH . F 3 HOH B 8 708 18 HOH HOH . F 3 HOH B 9 709 20 HOH HOH . F 3 HOH B 10 710 23 HOH HOH . F 3 HOH B 11 711 25 HOH HOH . F 3 HOH B 12 712 26 HOH HOH . F 3 HOH B 13 713 30 HOH HOH . F 3 HOH B 14 714 31 HOH HOH . F 3 HOH B 15 715 34 HOH HOH . F 3 HOH B 16 716 38 HOH HOH . F 3 HOH B 17 717 40 HOH HOH . F 3 HOH B 18 718 41 HOH HOH . F 3 HOH B 19 719 43 HOH HOH . F 3 HOH B 20 720 44 HOH HOH . F 3 HOH B 21 721 47 HOH HOH . F 3 HOH B 22 722 48 HOH HOH . F 3 HOH B 23 723 49 HOH HOH . F 3 HOH B 24 724 52 HOH HOH . F 3 HOH B 25 725 53 HOH HOH . F 3 HOH B 26 726 54 HOH HOH . F 3 HOH B 27 727 58 HOH HOH . F 3 HOH B 28 728 59 HOH HOH . F 3 HOH B 29 729 60 HOH HOH . F 3 HOH B 30 730 64 HOH HOH . F 3 HOH B 31 731 66 HOH HOH . F 3 HOH B 32 732 69 HOH HOH . F 3 HOH B 33 733 71 HOH HOH . F 3 HOH B 34 734 73 HOH HOH . F 3 HOH B 35 735 74 HOH HOH . F 3 HOH B 36 736 77 HOH HOH . F 3 HOH B 37 737 83 HOH HOH . F 3 HOH B 38 738 84 HOH HOH . F 3 HOH B 39 739 85 HOH HOH . F 3 HOH B 40 740 87 HOH HOH . F 3 HOH B 41 741 88 HOH HOH . F 3 HOH B 42 742 89 HOH HOH . F 3 HOH B 43 743 92 HOH HOH . F 3 HOH B 44 744 93 HOH HOH . F 3 HOH B 45 745 94 HOH HOH . F 3 HOH B 46 746 95 HOH HOH . F 3 HOH B 47 747 96 HOH HOH . F 3 HOH B 48 748 98 HOH HOH . F 3 HOH B 49 749 99 HOH HOH . F 3 HOH B 50 750 100 HOH HOH . F 3 HOH B 51 751 105 HOH HOH . F 3 HOH B 52 752 106 HOH HOH . F 3 HOH B 53 753 107 HOH HOH . F 3 HOH B 54 754 108 HOH HOH . F 3 HOH B 55 755 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 PD5 . . . C 2 10.789 -37.242 -5.595 1 54.15 ? C4 PD5 601 A 1 HETATM 2 C C5 PD5 . . . C 2 10.188 -36.189 -6.355 1 54.15 ? C5 PD5 601 A 1 HETATM 3 C C6 PD5 . . . C 2 11.028 -35.191 -6.882 1 54.15 ? C6 PD5 601 A 1 HETATM 4 N N1 PD5 . . . C 2 12.382 -35.261 -6.655 1 54.15 ? N1 PD5 601 A 1 HETATM 5 N N3 PD5 . . . C 2 12.135 -37.343 -5.347 1 54.15 ? N3 PD5 601 A 1 HETATM 6 C CAA PD5 . . . C 2 8.459 -40.082 -4.744 1 54.15 ? CAA PD5 601 A 1 HETATM 7 C CBE PD5 . . . C 2 9.729 -39.302 -4.384 1 54.15 ? CBE PD5 601 A 1 HETATM 8 C CAB PD5 . . . C 2 9.752 -38.87 -2.919 1 54.15 ? CAB PD5 601 A 1 HETATM 9 N NBF PD5 . . . C 2 9.753 -38.071 -5.203 1 54.15 ? NBF PD5 601 A 1 HETATM 10 N NAS PD5 . . . C 2 8.554 -37.61 -5.659 1 54.15 ? NAS PD5 601 A 1 HETATM 11 C C2 PD5 . . . C 2 12.818 -36.321 -5.912 1 54.15 ? C2 PD5 601 A 1 HETATM 12 N NAC PD5 . . . C 2 10.536 -34.156 -7.614 1 54.15 ? NAC PD5 601 A 1 HETATM 13 C CBB PD5 . . . C 2 8.8 -36.491 -6.349 1 54.15 ? CBB PD5 601 A 1 HETATM 14 C CAZ PD5 . . . C 2 7.669 -35.826 -6.898 1 54.15 ? CAZ PD5 601 A 1 HETATM 15 C CAO PD5 . . . C 2 7.479 -35.869 -8.269 1 54.15 ? CAO PD5 601 A 1 HETATM 16 C CAM PD5 . . . C 2 6.351 -35.268 -8.786 1 54.15 ? CAM PD5 601 A 1 HETATM 17 C CAN PD5 . . . C 2 6.753 -35.299 -6.007 1 54.15 ? CAN PD5 601 A 1 HETATM 18 C CAL PD5 . . . C 2 5.623 -34.694 -6.505 1 54.15 ? CAL PD5 601 A 1 HETATM 19 C CAX PD5 . . . C 2 5.448 -34.684 -7.885 1 54.15 ? CAX PD5 601 A 1 HETATM 20 N NAT PD5 . . . C 2 4.284 -34.128 -8.445 1 54.15 ? NAT PD5 601 A 1 HETATM 21 C CAV PD5 . . . C 2 3.692 -32.987 -7.897 1 54.15 ? CAV PD5 601 A 1 HETATM 22 O OAD PD5 . . . C 2 4.217 -32.288 -7.035 1 54.15 ? OAD PD5 601 A 1 HETATM 23 N NAU PD5 . . . C 2 2.471 -32.658 -8.52 1 54.15 ? NAU PD5 601 A 1 HETATM 24 C CAY PD5 . . . C 2 1.784 -31.483 -8.136 1 54.15 ? CAY PD5 601 A 1 HETATM 25 C CAP PD5 . . . C 2 2.407 -30.452 -7.421 1 54.15 ? CAP PD5 601 A 1 HETATM 26 C CAJ PD5 . . . C 2 0.437 -31.405 -8.509 1 54.15 ? CAJ PD5 601 A 1 HETATM 27 C CAH PD5 . . . C 2 -0.284 -30.268 -8.16 1 54.15 ? CAH PD5 601 A 1 HETATM 28 C CAK PD5 . . . C 2 0.319 -29.234 -7.449 1 54.15 ? CAK PD5 601 A 1 HETATM 29 C CBA PD5 . . . C 2 1.657 -29.341 -7.085 1 54.15 ? CBA PD5 601 A 1 HETATM 30 C CBG PD5 . . . C 2 2.318 -28.186 -6.301 1 54.15 ? CBG PD5 601 A 1 HETATM 31 F FAF PD5 . . . C 2 2.355 -27.035 -6.996 1 54.15 ? FAF PD5 601 A 1 HETATM 32 F FAG PD5 . . . C 2 1.669 -27.872 -5.132 1 54.15 ? FAG PD5 601 A 1 HETATM 33 F FAE PD5 . . . C 2 3.607 -28.399 -5.935 1 54.15 ? FAE PD5 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #