data_3QLH # _model_server_result.job_id NXlysdmXNQ_UeN7LmqMmrg _model_server_result.datetime_utc '2025-02-26 08:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3QLH # _exptl.entry_id 3QLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Extracted from the root bark of this Guyanan tree.' _entity.formula_weight 246.302 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-5,7-dihydroxy-9-methyl-2-(prop-1-en-2-yl)-1,2,3,4-tetrahydro-6H-benzo[7]annulen-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.11 _cell.angle_gamma 90 _cell.entry_id 3QLH _cell.length_a 163.926 _cell.length_b 72.978 _cell.length_c 108.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 444 A ASP 443 1_555 E MN MN . A MN 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD1 ASP 444 A ASP 443 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OE2 GLU 479 A GLU 478 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 A OD1 ASP 499 A ASP 498 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OD1 ASP 550 A ASP 549 1_555 E MN MN . A MN 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 E MN MN . A MN 556 1_555 C O2 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc7 E MN MN . A MN 556 1_555 C O1 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 F MN MN . A MN 557 1_555 C O2 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'C15 H18 O3' _chem_comp.formula_weight 246.302 _chem_comp.id MNK _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-5,7-dihydroxy-9-methyl-2-(prop-1-en-2-yl)-1,2,3,4-tetrahydro-6H-benzo[7]annulen-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C7 MNK doub 255 n n O1 C1 MNK sing 256 n n O1 H17 MNK sing 257 n n C2 C1 MNK sing 258 n n C2 C3 MNK sing 259 n n O2 C2 MNK doub 260 n n C3 C4 MNK doub 261 n n O3 C3 MNK sing 262 n n O3 H18 MNK sing 263 n n C4 C5 MNK sing 264 n n C4 H4 MNK sing 265 n n C5 C8 MNK sing 266 n n C6 C5 MNK doub 267 n n C6 C9 MNK sing 268 n n C7 C6 MNK sing 269 n n C8 H8 MNK sing 270 n n C8 H8A MNK sing 271 n n C8 H8B MNK sing 272 n n C9 H9 MNK sing 273 n n C9 H9A MNK sing 274 n n C10 C9 MNK sing 275 n n C10 H10 MNK sing 276 n n C11 C10 MNK sing 277 n n C11 H11 MNK sing 278 n n C11 H11A MNK sing 279 n n C12 C7 MNK sing 280 n n C12 C11 MNK sing 281 n n C12 H12 MNK sing 282 n n C12 H12A MNK sing 283 n n C13 C10 MNK sing 284 n n C13 C14 MNK doub 285 n n C14 H14 MNK sing 286 n n C14 H14A MNK sing 287 n n C15 C13 MNK sing 288 n n C15 H15 MNK sing 289 n n C15 H15A MNK sing 290 n n C15 H15B MNK sing 291 n n # _atom_sites.entry_id 3QLH _atom_sites.fract_transf_matrix[1][1] 0.0061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MNK A 1 1001 1001 MNK MNK . D 4 T27 A 1 555 1001 T27 T27 . E 5 MN A 1 556 1 MN MN . F 5 MN A 1 557 2 MN MN . G 6 DMS B 1 1001 1001 DMS DMS . H 7 EDO B 1 429 1001 EDO EDO . I 8 HOH A 1 558 2 HOH WAT . I 8 HOH A 2 559 6 HOH WAT . I 8 HOH A 3 560 7 HOH WAT . I 8 HOH A 4 561 10 HOH WAT . I 8 HOH A 5 562 14 HOH WAT . I 8 HOH A 6 563 16 HOH WAT . I 8 HOH A 7 564 17 HOH WAT . I 8 HOH A 8 565 26 HOH WAT . I 8 HOH A 9 566 27 HOH WAT . I 8 HOH A 10 567 28 HOH WAT . I 8 HOH A 11 568 29 HOH WAT . I 8 HOH A 12 569 30 HOH WAT . I 8 HOH A 13 570 33 HOH WAT . I 8 HOH A 14 571 34 HOH WAT . I 8 HOH A 15 572 38 HOH WAT . I 8 HOH A 16 573 39 HOH WAT . I 8 HOH A 17 574 40 HOH WAT . I 8 HOH A 18 575 41 HOH WAT . I 8 HOH A 19 576 42 HOH WAT . I 8 HOH A 20 577 43 HOH WAT . I 8 HOH A 21 578 44 HOH WAT . I 8 HOH A 22 579 47 HOH WAT . I 8 HOH A 23 580 48 HOH WAT . I 8 HOH A 24 581 49 HOH WAT . I 8 HOH A 25 582 50 HOH WAT . I 8 HOH A 26 583 51 HOH WAT . I 8 HOH A 27 584 53 HOH WAT . I 8 HOH A 28 585 54 HOH WAT . I 8 HOH A 29 586 55 HOH WAT . I 8 HOH A 30 587 61 HOH WAT . I 8 HOH A 31 588 62 HOH WAT . I 8 HOH A 32 589 65 HOH WAT . I 8 HOH A 33 590 67 HOH WAT . I 8 HOH A 34 591 68 HOH WAT . I 8 HOH A 35 592 69 HOH WAT . I 8 HOH A 36 593 70 HOH WAT . I 8 HOH A 37 594 71 HOH WAT . I 8 HOH A 38 595 72 HOH WAT . I 8 HOH A 39 596 73 HOH WAT . I 8 HOH A 40 597 74 HOH WAT . I 8 HOH A 41 598 82 HOH WAT . I 8 HOH A 42 599 83 HOH WAT . I 8 HOH A 43 600 84 HOH WAT . I 8 HOH A 44 601 86 HOH WAT . I 8 HOH A 45 602 88 HOH WAT . I 8 HOH A 46 603 91 HOH WAT . I 8 HOH A 47 604 93 HOH WAT . I 8 HOH A 48 605 94 HOH WAT . I 8 HOH A 49 606 96 HOH WAT . I 8 HOH A 50 607 97 HOH WAT . I 8 HOH A 51 608 98 HOH WAT . I 8 HOH A 52 609 99 HOH WAT . J 8 HOH B 1 1 1 HOH WAT . J 8 HOH B 2 3 3 HOH WAT . J 8 HOH B 3 4 4 HOH WAT . J 8 HOH B 4 5 5 HOH WAT . J 8 HOH B 5 430 8 HOH WAT . J 8 HOH B 6 431 9 HOH WAT . J 8 HOH B 7 432 11 HOH WAT . J 8 HOH B 8 433 12 HOH WAT . J 8 HOH B 9 434 13 HOH WAT . J 8 HOH B 10 435 15 HOH WAT . J 8 HOH B 11 436 18 HOH WAT . J 8 HOH B 12 437 19 HOH WAT . J 8 HOH B 13 438 20 HOH WAT . J 8 HOH B 14 439 21 HOH WAT . J 8 HOH B 15 440 22 HOH WAT . J 8 HOH B 16 441 23 HOH WAT . J 8 HOH B 17 442 24 HOH WAT . J 8 HOH B 18 443 25 HOH WAT . J 8 HOH B 19 444 31 HOH WAT . J 8 HOH B 20 445 32 HOH WAT . J 8 HOH B 21 446 35 HOH WAT . J 8 HOH B 22 447 36 HOH WAT . J 8 HOH B 23 448 37 HOH WAT . J 8 HOH B 24 449 45 HOH WAT . J 8 HOH B 25 450 46 HOH WAT . J 8 HOH B 26 451 52 HOH WAT . J 8 HOH B 27 452 56 HOH WAT . J 8 HOH B 28 453 57 HOH WAT . J 8 HOH B 29 454 58 HOH WAT . J 8 HOH B 30 455 59 HOH WAT . J 8 HOH B 31 456 60 HOH WAT . J 8 HOH B 32 457 63 HOH WAT . J 8 HOH B 33 458 64 HOH WAT . J 8 HOH B 34 459 66 HOH WAT . J 8 HOH B 35 460 75 HOH WAT . J 8 HOH B 36 461 76 HOH WAT . J 8 HOH B 37 462 77 HOH WAT . J 8 HOH B 38 463 78 HOH WAT . J 8 HOH B 39 464 79 HOH WAT . J 8 HOH B 40 465 80 HOH WAT . J 8 HOH B 41 466 81 HOH WAT . J 8 HOH B 42 467 85 HOH WAT . J 8 HOH B 43 468 87 HOH WAT . J 8 HOH B 44 469 89 HOH WAT . J 8 HOH B 45 470 90 HOH WAT . J 8 HOH B 46 471 92 HOH WAT . J 8 HOH B 47 472 95 HOH WAT . J 8 HOH B 48 473 100 HOH WAT . J 8 HOH B 49 474 101 HOH WAT . J 8 HOH B 50 475 102 HOH WAT . J 8 HOH B 51 476 103 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNK . . . C 3 9.986 22.266 12.666 1 92.9 ? C1 MNK 1001 A 1 HETATM 2 O O1 MNK . . . C 3 9.149 22.356 11.599 1 100.01 ? O1 MNK 1001 A 1 HETATM 3 C C2 MNK . . . C 3 10.941 21.207 12.552 1 91.37 ? C2 MNK 1001 A 1 HETATM 4 O O2 MNK . . . C 3 10.939 20.452 11.496 1 83.79 ? O2 MNK 1001 A 1 HETATM 5 C C3 MNK . . . C 3 11.941 20.869 13.504 1 92.7 ? C3 MNK 1001 A 1 HETATM 6 O O3 MNK . . . C 3 12.731 19.805 13.163 1 91.86 ? O3 MNK 1001 A 1 HETATM 7 C C4 MNK . . . C 3 12.151 21.545 14.724 1 97.91 ? C4 MNK 1001 A 1 HETATM 8 C C5 MNK . . . C 3 11.493 22.659 15.313 1 98.49 ? C5 MNK 1001 A 1 HETATM 9 C C6 MNK . . . C 3 10.382 23.482 14.88 1 96.47 ? C6 MNK 1001 A 1 HETATM 10 C C7 MNK . . . C 3 9.693 23.272 13.639 1 87.51 ? C7 MNK 1001 A 1 HETATM 11 C C8 MNK . . . C 3 12.095 23.028 16.652 1 93.68 ? C8 MNK 1001 A 1 HETATM 12 C C9 MNK . . . C 3 9.844 24.679 15.743 1 96.92 ? C9 MNK 1001 A 1 HETATM 13 C C10 MNK . . . C 3 8.985 25.861 15.282 1 93.28 ? C10 MNK 1001 A 1 HETATM 14 C C11 MNK . . . C 3 8.063 25.336 14.187 1 94.92 ? C11 MNK 1001 A 1 HETATM 15 C C12 MNK . . . C 3 8.528 24.207 13.298 1 91.81 ? C12 MNK 1001 A 1 HETATM 16 C C13 MNK . . . C 3 9.747 27.21 14.999 1 95.9 ? C13 MNK 1001 A 1 HETATM 17 C C14 MNK . . . C 3 10.541 27.844 16.076 1 93.34 ? C14 MNK 1001 A 1 HETATM 18 C C15 MNK . . . C 3 9.644 27.871 13.676 1 91.18 ? C15 MNK 1001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #