data_3QLH # _model_server_result.job_id vjepLSzsMxyVh6PIh04kYA _model_server_result.datetime_utc '2025-02-26 08:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":555}' # _entry.id 3QLH # _exptl.entry_id 3QLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.419 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.11 _cell.angle_gamma 90 _cell.entry_id 3QLH _cell.length_a 163.926 _cell.length_b 72.978 _cell.length_c 108.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 444 A ASP 443 1_555 E MN MN . A MN 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD1 ASP 444 A ASP 443 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OE2 GLU 479 A GLU 478 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 A OD1 ASP 499 A ASP 498 1_555 F MN MN . A MN 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OD1 ASP 550 A ASP 549 1_555 E MN MN . A MN 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 E MN MN . A MN 556 1_555 C O2 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc7 E MN MN . A MN 556 1_555 C O1 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 F MN MN . A MN 557 1_555 C O2 MNK . A MNK 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'C22 H18 N6' _chem_comp.formula_weight 366.419 _chem_comp.id T27 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Rilpivirine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 T27 doub 345 n y C1 C7 T27 sing 346 n n C1 C2 T27 sing 347 n y N2 C9 T27 doub 348 n y N2 C12 T27 sing 349 n y C3 C4 T27 sing 350 n y C3 C2 T27 doub 351 n y C3 C21 T27 sing 352 n n C4 C5 T27 doub 353 n y C5 C6 T27 sing 354 n y C5 C8 T27 sing 355 n n C6 N1 T27 sing 356 n n N1 C11 T27 sing 357 n n C9 C10 T27 sing 358 n y C10 C11 T27 doub 359 n y C11 N3 T27 sing 360 n y N3 C12 T27 doub 361 n y C12 N4 T27 sing 362 n n N4 C16 T27 sing 363 n n C13 C14 T27 doub 364 n y C13 C18 T27 sing 365 n y C13 C19 T27 sing 366 n n C14 C15 T27 sing 367 n y C15 C16 T27 doub 368 n y C16 C17 T27 sing 369 n y C17 C18 T27 doub 370 n y N5 C19 T27 trip 371 n n C20 C21 T27 doub 372 e n C20 C22 T27 sing 373 n n N6 C22 T27 trip 374 n n C4 H4 T27 sing 375 n n C7 H7 T27 sing 376 n n C7 H7A T27 sing 377 n n C7 H7B T27 sing 378 n n C2 H2 T27 sing 379 n n C8 H8 T27 sing 380 n n C8 H8A T27 sing 381 n n C8 H8B T27 sing 382 n n N1 HN1 T27 sing 383 n n C9 H9 T27 sing 384 n n C10 H10 T27 sing 385 n n N4 HN4 T27 sing 386 n n C14 H14 T27 sing 387 n n C15 H15 T27 sing 388 n n C17 H17 T27 sing 389 n n C18 H18 T27 sing 390 n n C20 H20 T27 sing 391 n n C21 H21 T27 sing 392 n n # _atom_sites.entry_id 3QLH _atom_sites.fract_transf_matrix[1][1] 0.0061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MNK A 1 1001 1001 MNK MNK . D 4 T27 A 1 555 1001 T27 T27 . E 5 MN A 1 556 1 MN MN . F 5 MN A 1 557 2 MN MN . G 6 DMS B 1 1001 1001 DMS DMS . H 7 EDO B 1 429 1001 EDO EDO . I 8 HOH A 1 558 2 HOH WAT . I 8 HOH A 2 559 6 HOH WAT . I 8 HOH A 3 560 7 HOH WAT . I 8 HOH A 4 561 10 HOH WAT . I 8 HOH A 5 562 14 HOH WAT . I 8 HOH A 6 563 16 HOH WAT . I 8 HOH A 7 564 17 HOH WAT . I 8 HOH A 8 565 26 HOH WAT . I 8 HOH A 9 566 27 HOH WAT . I 8 HOH A 10 567 28 HOH WAT . I 8 HOH A 11 568 29 HOH WAT . I 8 HOH A 12 569 30 HOH WAT . I 8 HOH A 13 570 33 HOH WAT . I 8 HOH A 14 571 34 HOH WAT . I 8 HOH A 15 572 38 HOH WAT . I 8 HOH A 16 573 39 HOH WAT . I 8 HOH A 17 574 40 HOH WAT . I 8 HOH A 18 575 41 HOH WAT . I 8 HOH A 19 576 42 HOH WAT . I 8 HOH A 20 577 43 HOH WAT . I 8 HOH A 21 578 44 HOH WAT . I 8 HOH A 22 579 47 HOH WAT . I 8 HOH A 23 580 48 HOH WAT . I 8 HOH A 24 581 49 HOH WAT . I 8 HOH A 25 582 50 HOH WAT . I 8 HOH A 26 583 51 HOH WAT . I 8 HOH A 27 584 53 HOH WAT . I 8 HOH A 28 585 54 HOH WAT . I 8 HOH A 29 586 55 HOH WAT . I 8 HOH A 30 587 61 HOH WAT . I 8 HOH A 31 588 62 HOH WAT . I 8 HOH A 32 589 65 HOH WAT . I 8 HOH A 33 590 67 HOH WAT . I 8 HOH A 34 591 68 HOH WAT . I 8 HOH A 35 592 69 HOH WAT . I 8 HOH A 36 593 70 HOH WAT . I 8 HOH A 37 594 71 HOH WAT . I 8 HOH A 38 595 72 HOH WAT . I 8 HOH A 39 596 73 HOH WAT . I 8 HOH A 40 597 74 HOH WAT . I 8 HOH A 41 598 82 HOH WAT . I 8 HOH A 42 599 83 HOH WAT . I 8 HOH A 43 600 84 HOH WAT . I 8 HOH A 44 601 86 HOH WAT . I 8 HOH A 45 602 88 HOH WAT . I 8 HOH A 46 603 91 HOH WAT . I 8 HOH A 47 604 93 HOH WAT . I 8 HOH A 48 605 94 HOH WAT . I 8 HOH A 49 606 96 HOH WAT . I 8 HOH A 50 607 97 HOH WAT . I 8 HOH A 51 608 98 HOH WAT . I 8 HOH A 52 609 99 HOH WAT . J 8 HOH B 1 1 1 HOH WAT . J 8 HOH B 2 3 3 HOH WAT . J 8 HOH B 3 4 4 HOH WAT . J 8 HOH B 4 5 5 HOH WAT . J 8 HOH B 5 430 8 HOH WAT . J 8 HOH B 6 431 9 HOH WAT . J 8 HOH B 7 432 11 HOH WAT . J 8 HOH B 8 433 12 HOH WAT . J 8 HOH B 9 434 13 HOH WAT . J 8 HOH B 10 435 15 HOH WAT . J 8 HOH B 11 436 18 HOH WAT . J 8 HOH B 12 437 19 HOH WAT . J 8 HOH B 13 438 20 HOH WAT . J 8 HOH B 14 439 21 HOH WAT . J 8 HOH B 15 440 22 HOH WAT . J 8 HOH B 16 441 23 HOH WAT . J 8 HOH B 17 442 24 HOH WAT . J 8 HOH B 18 443 25 HOH WAT . J 8 HOH B 19 444 31 HOH WAT . J 8 HOH B 20 445 32 HOH WAT . J 8 HOH B 21 446 35 HOH WAT . J 8 HOH B 22 447 36 HOH WAT . J 8 HOH B 23 448 37 HOH WAT . J 8 HOH B 24 449 45 HOH WAT . J 8 HOH B 25 450 46 HOH WAT . J 8 HOH B 26 451 52 HOH WAT . J 8 HOH B 27 452 56 HOH WAT . J 8 HOH B 28 453 57 HOH WAT . J 8 HOH B 29 454 58 HOH WAT . J 8 HOH B 30 455 59 HOH WAT . J 8 HOH B 31 456 60 HOH WAT . J 8 HOH B 32 457 63 HOH WAT . J 8 HOH B 33 458 64 HOH WAT . J 8 HOH B 34 459 66 HOH WAT . J 8 HOH B 35 460 75 HOH WAT . J 8 HOH B 36 461 76 HOH WAT . J 8 HOH B 37 462 77 HOH WAT . J 8 HOH B 38 463 78 HOH WAT . J 8 HOH B 39 464 79 HOH WAT . J 8 HOH B 40 465 80 HOH WAT . J 8 HOH B 41 466 81 HOH WAT . J 8 HOH B 42 467 85 HOH WAT . J 8 HOH B 43 468 87 HOH WAT . J 8 HOH B 44 469 89 HOH WAT . J 8 HOH B 45 470 90 HOH WAT . J 8 HOH B 46 471 92 HOH WAT . J 8 HOH B 47 472 95 HOH WAT . J 8 HOH B 48 473 100 HOH WAT . J 8 HOH B 49 474 101 HOH WAT . J 8 HOH B 50 475 102 HOH WAT . J 8 HOH B 51 476 103 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T27 . . . D 4 49.27 -24.706 38.198 1 66.24 ? C1 T27 555 A 1 HETATM 2 N N2 T27 . . . D 4 52.393 -25.483 33.267 1 73.01 ? N2 T27 555 A 1 HETATM 3 C C3 T27 . . . D 4 48.729 -26.699 39.567 1 63.95 ? C3 T27 555 A 1 HETATM 4 C C4 T27 . . . D 4 50.041 -27.213 39.34 1 63.63 ? C4 T27 555 A 1 HETATM 5 C C5 T27 . . . D 4 50.994 -26.509 38.549 1 61.42 ? C5 T27 555 A 1 HETATM 6 C C6 T27 . . . D 4 50.601 -25.223 37.955 1 65.2 ? C6 T27 555 A 1 HETATM 7 C C7 T27 . . . D 4 48.851 -23.376 37.594 1 65.11 ? C7 T27 555 A 1 HETATM 8 C C2 T27 . . . D 4 48.339 -25.439 38.996 1 60.78 ? C2 T27 555 A 1 HETATM 9 C C8 T27 . . . D 4 52.389 -27.138 38.348 1 60.53 ? C8 T27 555 A 1 HETATM 10 N N1 T27 . . . D 4 51.4 -24.452 37.157 1 65.34 ? N1 T27 555 A 1 HETATM 11 C C9 T27 . . . D 4 52.868 -24.287 33.795 1 69.41 ? C9 T27 555 A 1 HETATM 12 C C10 T27 . . . D 4 52.576 -23.85 35.115 1 67.71 ? C10 T27 555 A 1 HETATM 13 C C11 T27 . . . D 4 51.791 -24.739 35.879 1 69.18 ? C11 T27 555 A 1 HETATM 14 N N3 T27 . . . D 4 51.315 -25.903 35.361 1 65.82 ? N3 T27 555 A 1 HETATM 15 C C12 T27 . . . D 4 51.619 -26.222 34.112 1 68.56 ? C12 T27 555 A 1 HETATM 16 N N4 T27 . . . D 4 51.175 -27.481 33.627 1 75.84 ? N4 T27 555 A 1 HETATM 17 C C13 T27 . . . D 4 48.947 -30.765 35.227 1 71.23 ? C13 T27 555 A 1 HETATM 18 C C14 T27 . . . D 4 49.546 -30.832 33.921 1 71.94 ? C14 T27 555 A 1 HETATM 19 C C15 T27 . . . D 4 50.263 -29.721 33.392 1 71.87 ? C15 T27 555 A 1 HETATM 20 C C16 T27 . . . D 4 50.409 -28.517 34.166 1 74.8 ? C16 T27 555 A 1 HETATM 21 C C17 T27 . . . D 4 49.806 -28.466 35.505 1 74.99 ? C17 T27 555 A 1 HETATM 22 C C18 T27 . . . D 4 49.086 -29.587 36.027 1 72.39 ? C18 T27 555 A 1 HETATM 23 N N5 T27 . . . D 4 47.673 -32.83 36.185 1 72.05 ? N5 T27 555 A 1 HETATM 24 C C19 T27 . . . D 4 48.227 -31.908 35.755 1 71.68 ? C19 T27 555 A 1 HETATM 25 C C20 T27 . . . D 4 46.882 -27.004 41.166 1 64.2 ? C20 T27 555 A 1 HETATM 26 C C21 T27 . . . D 4 47.815 -27.498 40.376 1 62.79 ? C21 T27 555 A 1 HETATM 27 N N6 T27 . . . D 4 45.341 -28.599 42.463 1 70.99 ? N6 T27 555 A 1 HETATM 28 C C22 T27 . . . D 4 46.045 -27.857 41.91 1 68.23 ? C22 T27 555 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #