data_3QLR
#
_model_server_result.job_id            Xox513BCbnPq7hBbidXSAA 
_model_server_result.datetime_utc      '2024-11-07 13:18:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qlr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":194}' 
#
_entry.id    3QLR 
#
_exptl.entry_id    3QLR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.419 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.93 
_cell.angle_gamma         90 
_cell.entry_id            3QLR 
_cell.length_a            37.99 
_cell.length_b            66.266 
_cell.length_c            75.888 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QLR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C19 H24 N4 O3' 
_chem_comp.formula_weight    356.419 
_chem_comp.id                QLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 QLR doub 359 n y 
N1 C6 QLR sing 360 n y 
NAF C2 QLR sing 361 n n 
C2 N3 QLR sing 362 n y 
N3 C4 QLR doub 363 n y 
C4 NAG QLR sing 364 n n 
C4 C5 QLR sing 365 n y 
C6 C5 QLR doub 366 n y 
C5 CAH QLR sing 367 n n 
C6 CAE QLR sing 368 n n 
CAL CAA QLR sing 369 n n 
CAA HAA QLR sing 370 n n 
CAA HAAA QLR sing 371 n n 
CAA HAAB QLR sing 372 n n 
OAO CAB QLR sing 373 n n 
CAB HAB QLR sing 374 n n 
CAB HABA QLR sing 375 n n 
CAB HABB QLR sing 376 n n 
OAP CAC QLR sing 377 n n 
CAC HAC QLR sing 378 n n 
CAC HACA QLR sing 379 n n 
CAC HACB QLR sing 380 n n 
CAD OAQ QLR sing 381 n n 
CAD HAD QLR sing 382 n n 
CAD HADA QLR sing 383 n n 
CAD HADB QLR sing 384 n n 
CAE HAE QLR sing 385 n n 
CAE HAEA QLR sing 386 n n 
CAE HAEB QLR sing 387 n n 
NAF HNAF QLR sing 388 n n 
NAF HNAA QLR sing 389 n n 
NAG HNAG QLR sing 390 n n 
NAG HNAB QLR sing 391 n n 
CAH CAI QLR trip 392 n n 
CAI CAZ QLR sing 393 n n 
CAU CAJ QLR doub 394 n y 
CAJ CAW QLR sing 395 n y 
CAJ HAJ QLR sing 396 n n 
CAU CAK QLR sing 397 n y 
CAK CAX QLR doub 398 n y 
CAK HAK QLR sing 399 n n 
CAZ CAL QLR sing 400 n n 
CAL HAL QLR sing 401 n n 
CAL HALA QLR sing 402 n n 
CAW OAO QLR sing 403 n n 
CAX OAP QLR sing 404 n n 
CAY OAQ QLR sing 405 n n 
CAZ CAU QLR sing 406 n n 
CAW CAY QLR doub 407 n y 
CAX CAY QLR sing 408 n y 
CAZ HAZ QLR sing 409 n n 
#
_atom_sites.entry_id                     3QLR 
_atom_sites.fract_transf_matrix[1][1]    0.026323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001345 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 193 193 NDP NDP . 
D 3 QLR A 1 194 1 QLR QLR . 
E 4 GOL A 1 803 803 GOL GOL . 
F 5 GLY A 1 804 804 GLY GLY . 
G 5 GLY A 1 805 805 GLY GLY . 
H 2 NDP B 1 193 193 NDP NDP . 
I 3 QLR B 1 194 1 QLR QLR . 
J 4 GOL B 1 806 806 GOL GOL . 
K 6 HOH A 1 195 4 HOH HOH . 
K 6 HOH A 2 196 6 HOH HOH . 
K 6 HOH A 3 197 197 HOH HOH . 
K 6 HOH A 4 198 8 HOH HOH . 
K 6 HOH A 5 199 9 HOH HOH . 
K 6 HOH A 6 200 200 HOH HOH . 
K 6 HOH A 7 201 10 HOH HOH . 
K 6 HOH A 8 202 11 HOH HOH . 
K 6 HOH A 9 203 12 HOH HOH . 
K 6 HOH A 10 204 204 HOH HOH . 
K 6 HOH A 11 205 13 HOH HOH . 
K 6 HOH A 12 206 14 HOH HOH . 
K 6 HOH A 13 207 16 HOH HOH . 
K 6 HOH A 14 208 208 HOH HOH . 
K 6 HOH A 15 209 209 HOH HOH . 
K 6 HOH A 16 210 210 HOH HOH . 
K 6 HOH A 17 211 18 HOH HOH . 
K 6 HOH A 18 212 212 HOH HOH . 
K 6 HOH A 19 213 213 HOH HOH . 
K 6 HOH A 20 214 19 HOH HOH . 
K 6 HOH A 21 215 23 HOH HOH . 
K 6 HOH A 22 216 216 HOH HOH . 
K 6 HOH A 23 217 217 HOH HOH . 
K 6 HOH A 24 218 218 HOH HOH . 
K 6 HOH A 25 219 24 HOH HOH . 
K 6 HOH A 26 220 25 HOH HOH . 
K 6 HOH A 27 221 31 HOH HOH . 
K 6 HOH A 28 222 34 HOH HOH . 
K 6 HOH A 29 223 35 HOH HOH . 
K 6 HOH A 30 224 224 HOH HOH . 
K 6 HOH A 31 225 38 HOH HOH . 
K 6 HOH A 32 226 226 HOH HOH . 
K 6 HOH A 33 227 40 HOH HOH . 
K 6 HOH A 34 228 42 HOH HOH . 
K 6 HOH A 35 229 43 HOH HOH . 
K 6 HOH A 36 230 230 HOH HOH . 
K 6 HOH A 37 231 49 HOH HOH . 
K 6 HOH A 38 232 52 HOH HOH . 
K 6 HOH A 39 233 53 HOH HOH . 
K 6 HOH A 40 234 54 HOH HOH . 
K 6 HOH A 41 235 55 HOH HOH . 
K 6 HOH A 42 236 56 HOH HOH . 
K 6 HOH A 43 237 59 HOH HOH . 
K 6 HOH A 44 238 61 HOH HOH . 
K 6 HOH A 45 239 62 HOH HOH . 
K 6 HOH A 46 240 63 HOH HOH . 
K 6 HOH A 47 241 64 HOH HOH . 
K 6 HOH A 48 242 66 HOH HOH . 
K 6 HOH A 49 243 68 HOH HOH . 
K 6 HOH A 50 244 72 HOH HOH . 
K 6 HOH A 51 245 74 HOH HOH . 
K 6 HOH A 52 246 75 HOH HOH . 
K 6 HOH A 53 247 81 HOH HOH . 
K 6 HOH A 54 248 83 HOH HOH . 
K 6 HOH A 55 249 86 HOH HOH . 
K 6 HOH A 56 250 87 HOH HOH . 
K 6 HOH A 57 251 91 HOH HOH . 
K 6 HOH A 58 252 92 HOH HOH . 
K 6 HOH A 59 253 94 HOH HOH . 
K 6 HOH A 60 254 95 HOH HOH . 
K 6 HOH A 61 255 97 HOH HOH . 
K 6 HOH A 62 256 98 HOH HOH . 
K 6 HOH A 63 257 99 HOH HOH . 
K 6 HOH A 64 258 100 HOH HOH . 
K 6 HOH A 65 259 101 HOH HOH . 
K 6 HOH A 66 260 109 HOH HOH . 
K 6 HOH A 67 261 113 HOH HOH . 
K 6 HOH A 68 262 114 HOH HOH . 
K 6 HOH A 69 263 115 HOH HOH . 
K 6 HOH A 70 264 116 HOH HOH . 
K 6 HOH A 71 265 120 HOH HOH . 
K 6 HOH A 72 266 123 HOH HOH . 
K 6 HOH A 73 267 124 HOH HOH . 
K 6 HOH A 74 268 125 HOH HOH . 
K 6 HOH A 75 269 126 HOH HOH . 
K 6 HOH A 76 270 129 HOH HOH . 
K 6 HOH A 77 271 130 HOH HOH . 
K 6 HOH A 78 272 134 HOH HOH . 
K 6 HOH A 79 273 136 HOH HOH . 
K 6 HOH A 80 274 142 HOH HOH . 
K 6 HOH A 81 275 143 HOH HOH . 
K 6 HOH A 82 276 150 HOH HOH . 
K 6 HOH A 83 277 152 HOH HOH . 
K 6 HOH A 84 278 154 HOH HOH . 
K 6 HOH A 85 279 156 HOH HOH . 
K 6 HOH A 86 280 162 HOH HOH . 
K 6 HOH A 87 281 163 HOH HOH . 
K 6 HOH A 88 282 165 HOH HOH . 
K 6 HOH A 89 283 169 HOH HOH . 
K 6 HOH A 90 284 171 HOH HOH . 
K 6 HOH A 91 285 175 HOH HOH . 
K 6 HOH A 92 286 176 HOH HOH . 
K 6 HOH A 93 287 177 HOH HOH . 
K 6 HOH A 94 288 182 HOH HOH . 
K 6 HOH A 95 289 186 HOH HOH . 
K 6 HOH A 96 290 188 HOH HOH . 
K 6 HOH A 97 291 189 HOH HOH . 
K 6 HOH A 98 292 190 HOH HOH . 
K 6 HOH A 99 293 194 HOH HOH . 
L 6 HOH B 1 195 1 HOH HOH . 
L 6 HOH B 2 196 196 HOH HOH . 
L 6 HOH B 3 197 2 HOH HOH . 
L 6 HOH B 4 198 3 HOH HOH . 
L 6 HOH B 5 199 199 HOH HOH . 
L 6 HOH B 6 200 5 HOH HOH . 
L 6 HOH B 7 201 7 HOH HOH . 
L 6 HOH B 8 202 202 HOH HOH . 
L 6 HOH B 9 203 15 HOH HOH . 
L 6 HOH B 10 204 17 HOH HOH . 
L 6 HOH B 11 205 20 HOH HOH . 
L 6 HOH B 12 206 21 HOH HOH . 
L 6 HOH B 13 207 207 HOH HOH . 
L 6 HOH B 14 208 22 HOH HOH . 
L 6 HOH B 15 209 26 HOH HOH . 
L 6 HOH B 16 210 27 HOH HOH . 
L 6 HOH B 17 211 211 HOH HOH . 
L 6 HOH B 18 212 28 HOH HOH . 
L 6 HOH B 19 213 29 HOH HOH . 
L 6 HOH B 20 214 30 HOH HOH . 
L 6 HOH B 21 215 215 HOH HOH . 
L 6 HOH B 22 216 32 HOH HOH . 
L 6 HOH B 23 217 33 HOH HOH . 
L 6 HOH B 24 218 36 HOH HOH . 
L 6 HOH B 25 219 37 HOH HOH . 
L 6 HOH B 26 220 220 HOH HOH . 
L 6 HOH B 27 221 39 HOH HOH . 
L 6 HOH B 28 222 44 HOH HOH . 
L 6 HOH B 29 223 223 HOH HOH . 
L 6 HOH B 30 224 45 HOH HOH . 
L 6 HOH B 31 225 225 HOH HOH . 
L 6 HOH B 32 226 46 HOH HOH . 
L 6 HOH B 33 227 227 HOH HOH . 
L 6 HOH B 34 228 228 HOH HOH . 
L 6 HOH B 35 229 47 HOH HOH . 
L 6 HOH B 36 230 48 HOH HOH . 
L 6 HOH B 37 231 57 HOH HOH . 
L 6 HOH B 38 232 58 HOH HOH . 
L 6 HOH B 39 233 60 HOH HOH . 
L 6 HOH B 40 234 65 HOH HOH . 
L 6 HOH B 41 235 235 HOH HOH . 
L 6 HOH B 42 236 67 HOH HOH . 
L 6 HOH B 43 237 69 HOH HOH . 
L 6 HOH B 44 238 70 HOH HOH . 
L 6 HOH B 45 239 71 HOH HOH . 
L 6 HOH B 46 240 73 HOH HOH . 
L 6 HOH B 47 241 77 HOH HOH . 
L 6 HOH B 48 242 78 HOH HOH . 
L 6 HOH B 49 243 80 HOH HOH . 
L 6 HOH B 50 244 84 HOH HOH . 
L 6 HOH B 51 245 85 HOH HOH . 
L 6 HOH B 52 246 88 HOH HOH . 
L 6 HOH B 53 247 90 HOH HOH . 
L 6 HOH B 54 248 93 HOH HOH . 
L 6 HOH B 55 249 96 HOH HOH . 
L 6 HOH B 56 250 102 HOH HOH . 
L 6 HOH B 57 251 103 HOH HOH . 
L 6 HOH B 58 252 105 HOH HOH . 
L 6 HOH B 59 253 106 HOH HOH . 
L 6 HOH B 60 254 108 HOH HOH . 
L 6 HOH B 61 255 110 HOH HOH . 
L 6 HOH B 62 256 112 HOH HOH . 
L 6 HOH B 63 257 117 HOH HOH . 
L 6 HOH B 64 258 118 HOH HOH . 
L 6 HOH B 65 259 119 HOH HOH . 
L 6 HOH B 66 260 121 HOH HOH . 
L 6 HOH B 67 261 127 HOH HOH . 
L 6 HOH B 68 262 128 HOH HOH . 
L 6 HOH B 69 263 131 HOH HOH . 
L 6 HOH B 70 264 132 HOH HOH . 
L 6 HOH B 71 265 133 HOH HOH . 
L 6 HOH B 72 266 137 HOH HOH . 
L 6 HOH B 73 267 138 HOH HOH . 
L 6 HOH B 74 268 139 HOH HOH . 
L 6 HOH B 75 269 140 HOH HOH . 
L 6 HOH B 76 270 141 HOH HOH . 
L 6 HOH B 77 271 144 HOH HOH . 
L 6 HOH B 78 272 145 HOH HOH . 
L 6 HOH B 79 273 147 HOH HOH . 
L 6 HOH B 80 274 148 HOH HOH . 
L 6 HOH B 81 275 149 HOH HOH . 
L 6 HOH B 82 276 151 HOH HOH . 
L 6 HOH B 83 277 153 HOH HOH . 
L 6 HOH B 84 278 155 HOH HOH . 
L 6 HOH B 85 279 159 HOH HOH . 
L 6 HOH B 86 280 160 HOH HOH . 
L 6 HOH B 87 281 161 HOH HOH . 
L 6 HOH B 88 282 164 HOH HOH . 
L 6 HOH B 89 283 167 HOH HOH . 
L 6 HOH B 90 284 168 HOH HOH . 
L 6 HOH B 91 285 170 HOH HOH . 
L 6 HOH B 92 286 178 HOH HOH . 
L 6 HOH B 93 287 180 HOH HOH . 
L 6 HOH B 94 288 183 HOH HOH . 
L 6 HOH B 95 289 184 HOH HOH . 
L 6 HOH B 96 290 187 HOH HOH . 
L 6 HOH B 97 291 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 QLR . . . D 3 -2.078 2.985 27.994 1 18.66 ? N1 QLR 194 A 1 
HETATM 2 C C2 QLR . . . D 3 -1.39 2.158 27.179 1 18.68 ? C2 QLR 194 A 1 
HETATM 3 N N3 QLR . . . D 3 -0.067 1.981 27.338 1 19.4 ? N3 QLR 194 A 1 
HETATM 4 C C4 QLR . . . D 3 0.605 2.624 28.325 1 20.04 ? C4 QLR 194 A 1 
HETATM 5 C C5 QLR . . . D 3 -0.1 3.49 29.178 1 19.64 ? C5 QLR 194 A 1 
HETATM 6 C C6 QLR . . . D 3 -1.479 3.657 28.983 1 18.11 ? C6 QLR 194 A 1 
HETATM 7 C CAA QLR . . . D 3 3.74 4.9 33.959 1 20.02 ? CAA QLR 194 A 1 
HETATM 8 C CAB QLR . . . D 3 0.963 9.372 36.228 1 29.07 ? CAB QLR 194 A 1 
HETATM 9 C CAC QLR . . . D 3 -1.479 3.715 35.338 1 24.29 ? CAC QLR 194 A 1 
HETATM 10 C CAD QLR . . . D 3 -2.584 8.408 35.294 1 30.45 ? CAD QLR 194 A 1 
HETATM 11 C CAE QLR . . . D 3 -2.33 4.567 29.857 1 18.47 ? CAE QLR 194 A 1 
HETATM 12 N NAF QLR . . . D 3 -2.035 1.515 26.215 1 18.13 ? NAF QLR 194 A 1 
HETATM 13 N NAG QLR . . . D 3 1.921 2.434 28.464 1 17.65 ? NAG QLR 194 A 1 
HETATM 14 C CAH QLR . . . D 3 0.604 4.181 30.215 1 19.12 ? CAH QLR 194 A 1 
HETATM 15 C CAI QLR . . . D 3 1.25 4.741 31.076 1 19.95 ? CAI QLR 194 A 1 
HETATM 16 C CAJ QLR . . . D 3 1.331 7.341 33.549 1 24.78 ? CAJ QLR 194 A 1 
HETATM 17 C CAK QLR . . . D 3 0.092 5.284 33.659 1 24.91 ? CAK QLR 194 A 1 
HETATM 18 C CAL QLR . . . D 3 2.95 4.329 32.779 1 20.91 ? CAL QLR 194 A 1 
HETATM 19 O OAO QLR . . . D 3 0.711 9.218 34.844 1 26.73 ? OAO QLR 194 A 1 
HETATM 20 O OAP QLR . . . D 3 -1.828 5.08 35.083 1 26.45 ? OAP QLR 194 A 1 
HETATM 21 O OAQ QLR . . . D 3 -1.476 7.685 35.94 1 27.97 ? OAQ QLR 194 A 1 
HETATM 22 C CAU QLR . . . D 3 1.137 6.031 33.136 1 24.02 ? CAU QLR 194 A 1 
HETATM 23 C CAW QLR . . . D 3 0.475 7.91 34.494 1 26.32 ? CAW QLR 194 A 1 
HETATM 24 C CAX QLR . . . D 3 -0.783 5.834 34.593 1 26.41 ? CAX QLR 194 A 1 
HETATM 25 C CAY QLR . . . D 3 -0.6 7.156 35.013 1 26.34 ? CAY QLR 194 A 1 
HETATM 26 C CAZ QLR . . . D 3 2.073 5.394 32.111 1 21.61 ? CAZ QLR 194 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#