data_3QLR # _model_server_result.job_id -oIp6hDWsRUyI6UgVYMvNQ _model_server_result.datetime_utc '2024-11-28 08:15:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":194}' # _entry.id 3QLR # _exptl.entry_id 3QLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.93 _cell.angle_gamma 90 _cell.entry_id 3QLR _cell.length_a 37.99 _cell.length_b 66.266 _cell.length_c 75.888 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C19 H24 N4 O3' _chem_comp.formula_weight 356.419 _chem_comp.id QLR _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 QLR doub 359 n y N1 C6 QLR sing 360 n y NAF C2 QLR sing 361 n n C2 N3 QLR sing 362 n y N3 C4 QLR doub 363 n y C4 NAG QLR sing 364 n n C4 C5 QLR sing 365 n y C6 C5 QLR doub 366 n y C5 CAH QLR sing 367 n n C6 CAE QLR sing 368 n n CAL CAA QLR sing 369 n n CAA HAA QLR sing 370 n n CAA HAAA QLR sing 371 n n CAA HAAB QLR sing 372 n n OAO CAB QLR sing 373 n n CAB HAB QLR sing 374 n n CAB HABA QLR sing 375 n n CAB HABB QLR sing 376 n n OAP CAC QLR sing 377 n n CAC HAC QLR sing 378 n n CAC HACA QLR sing 379 n n CAC HACB QLR sing 380 n n CAD OAQ QLR sing 381 n n CAD HAD QLR sing 382 n n CAD HADA QLR sing 383 n n CAD HADB QLR sing 384 n n CAE HAE QLR sing 385 n n CAE HAEA QLR sing 386 n n CAE HAEB QLR sing 387 n n NAF HNAF QLR sing 388 n n NAF HNAA QLR sing 389 n n NAG HNAG QLR sing 390 n n NAG HNAB QLR sing 391 n n CAH CAI QLR trip 392 n n CAI CAZ QLR sing 393 n n CAU CAJ QLR doub 394 n y CAJ CAW QLR sing 395 n y CAJ HAJ QLR sing 396 n n CAU CAK QLR sing 397 n y CAK CAX QLR doub 398 n y CAK HAK QLR sing 399 n n CAZ CAL QLR sing 400 n n CAL HAL QLR sing 401 n n CAL HALA QLR sing 402 n n CAW OAO QLR sing 403 n n CAX OAP QLR sing 404 n n CAY OAQ QLR sing 405 n n CAZ CAU QLR sing 406 n n CAW CAY QLR doub 407 n y CAX CAY QLR sing 408 n y CAZ HAZ QLR sing 409 n n # _atom_sites.entry_id 3QLR _atom_sites.fract_transf_matrix[1][1] 0.026323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001345 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 193 193 NDP NDP . D 3 QLR A 1 194 1 QLR QLR . E 4 GOL A 1 803 803 GOL GOL . F 5 GLY A 1 804 804 GLY GLY . G 5 GLY A 1 805 805 GLY GLY . H 2 NDP B 1 193 193 NDP NDP . I 3 QLR B 1 194 1 QLR QLR . J 4 GOL B 1 806 806 GOL GOL . K 6 HOH A 1 195 4 HOH HOH . K 6 HOH A 2 196 6 HOH HOH . K 6 HOH A 3 197 197 HOH HOH . K 6 HOH A 4 198 8 HOH HOH . K 6 HOH A 5 199 9 HOH HOH . K 6 HOH A 6 200 200 HOH HOH . K 6 HOH A 7 201 10 HOH HOH . K 6 HOH A 8 202 11 HOH HOH . K 6 HOH A 9 203 12 HOH HOH . K 6 HOH A 10 204 204 HOH HOH . K 6 HOH A 11 205 13 HOH HOH . K 6 HOH A 12 206 14 HOH HOH . K 6 HOH A 13 207 16 HOH HOH . K 6 HOH A 14 208 208 HOH HOH . K 6 HOH A 15 209 209 HOH HOH . K 6 HOH A 16 210 210 HOH HOH . K 6 HOH A 17 211 18 HOH HOH . K 6 HOH A 18 212 212 HOH HOH . K 6 HOH A 19 213 213 HOH HOH . K 6 HOH A 20 214 19 HOH HOH . K 6 HOH A 21 215 23 HOH HOH . K 6 HOH A 22 216 216 HOH HOH . K 6 HOH A 23 217 217 HOH HOH . K 6 HOH A 24 218 218 HOH HOH . K 6 HOH A 25 219 24 HOH HOH . K 6 HOH A 26 220 25 HOH HOH . K 6 HOH A 27 221 31 HOH HOH . K 6 HOH A 28 222 34 HOH HOH . K 6 HOH A 29 223 35 HOH HOH . K 6 HOH A 30 224 224 HOH HOH . K 6 HOH A 31 225 38 HOH HOH . K 6 HOH A 32 226 226 HOH HOH . K 6 HOH A 33 227 40 HOH HOH . K 6 HOH A 34 228 42 HOH HOH . K 6 HOH A 35 229 43 HOH HOH . K 6 HOH A 36 230 230 HOH HOH . K 6 HOH A 37 231 49 HOH HOH . K 6 HOH A 38 232 52 HOH HOH . K 6 HOH A 39 233 53 HOH HOH . K 6 HOH A 40 234 54 HOH HOH . K 6 HOH A 41 235 55 HOH HOH . K 6 HOH A 42 236 56 HOH HOH . K 6 HOH A 43 237 59 HOH HOH . K 6 HOH A 44 238 61 HOH HOH . K 6 HOH A 45 239 62 HOH HOH . K 6 HOH A 46 240 63 HOH HOH . K 6 HOH A 47 241 64 HOH HOH . K 6 HOH A 48 242 66 HOH HOH . K 6 HOH A 49 243 68 HOH HOH . K 6 HOH A 50 244 72 HOH HOH . K 6 HOH A 51 245 74 HOH HOH . K 6 HOH A 52 246 75 HOH HOH . K 6 HOH A 53 247 81 HOH HOH . K 6 HOH A 54 248 83 HOH HOH . K 6 HOH A 55 249 86 HOH HOH . K 6 HOH A 56 250 87 HOH HOH . K 6 HOH A 57 251 91 HOH HOH . K 6 HOH A 58 252 92 HOH HOH . K 6 HOH A 59 253 94 HOH HOH . K 6 HOH A 60 254 95 HOH HOH . K 6 HOH A 61 255 97 HOH HOH . K 6 HOH A 62 256 98 HOH HOH . K 6 HOH A 63 257 99 HOH HOH . K 6 HOH A 64 258 100 HOH HOH . K 6 HOH A 65 259 101 HOH HOH . K 6 HOH A 66 260 109 HOH HOH . K 6 HOH A 67 261 113 HOH HOH . K 6 HOH A 68 262 114 HOH HOH . K 6 HOH A 69 263 115 HOH HOH . K 6 HOH A 70 264 116 HOH HOH . K 6 HOH A 71 265 120 HOH HOH . K 6 HOH A 72 266 123 HOH HOH . K 6 HOH A 73 267 124 HOH HOH . K 6 HOH A 74 268 125 HOH HOH . K 6 HOH A 75 269 126 HOH HOH . K 6 HOH A 76 270 129 HOH HOH . K 6 HOH A 77 271 130 HOH HOH . K 6 HOH A 78 272 134 HOH HOH . K 6 HOH A 79 273 136 HOH HOH . K 6 HOH A 80 274 142 HOH HOH . K 6 HOH A 81 275 143 HOH HOH . K 6 HOH A 82 276 150 HOH HOH . K 6 HOH A 83 277 152 HOH HOH . K 6 HOH A 84 278 154 HOH HOH . K 6 HOH A 85 279 156 HOH HOH . K 6 HOH A 86 280 162 HOH HOH . K 6 HOH A 87 281 163 HOH HOH . K 6 HOH A 88 282 165 HOH HOH . K 6 HOH A 89 283 169 HOH HOH . K 6 HOH A 90 284 171 HOH HOH . K 6 HOH A 91 285 175 HOH HOH . K 6 HOH A 92 286 176 HOH HOH . K 6 HOH A 93 287 177 HOH HOH . K 6 HOH A 94 288 182 HOH HOH . K 6 HOH A 95 289 186 HOH HOH . K 6 HOH A 96 290 188 HOH HOH . K 6 HOH A 97 291 189 HOH HOH . K 6 HOH A 98 292 190 HOH HOH . K 6 HOH A 99 293 194 HOH HOH . L 6 HOH B 1 195 1 HOH HOH . L 6 HOH B 2 196 196 HOH HOH . L 6 HOH B 3 197 2 HOH HOH . L 6 HOH B 4 198 3 HOH HOH . L 6 HOH B 5 199 199 HOH HOH . L 6 HOH B 6 200 5 HOH HOH . L 6 HOH B 7 201 7 HOH HOH . L 6 HOH B 8 202 202 HOH HOH . L 6 HOH B 9 203 15 HOH HOH . L 6 HOH B 10 204 17 HOH HOH . L 6 HOH B 11 205 20 HOH HOH . L 6 HOH B 12 206 21 HOH HOH . L 6 HOH B 13 207 207 HOH HOH . L 6 HOH B 14 208 22 HOH HOH . L 6 HOH B 15 209 26 HOH HOH . L 6 HOH B 16 210 27 HOH HOH . L 6 HOH B 17 211 211 HOH HOH . L 6 HOH B 18 212 28 HOH HOH . L 6 HOH B 19 213 29 HOH HOH . L 6 HOH B 20 214 30 HOH HOH . L 6 HOH B 21 215 215 HOH HOH . L 6 HOH B 22 216 32 HOH HOH . L 6 HOH B 23 217 33 HOH HOH . L 6 HOH B 24 218 36 HOH HOH . L 6 HOH B 25 219 37 HOH HOH . L 6 HOH B 26 220 220 HOH HOH . L 6 HOH B 27 221 39 HOH HOH . L 6 HOH B 28 222 44 HOH HOH . L 6 HOH B 29 223 223 HOH HOH . L 6 HOH B 30 224 45 HOH HOH . L 6 HOH B 31 225 225 HOH HOH . L 6 HOH B 32 226 46 HOH HOH . L 6 HOH B 33 227 227 HOH HOH . L 6 HOH B 34 228 228 HOH HOH . L 6 HOH B 35 229 47 HOH HOH . L 6 HOH B 36 230 48 HOH HOH . L 6 HOH B 37 231 57 HOH HOH . L 6 HOH B 38 232 58 HOH HOH . L 6 HOH B 39 233 60 HOH HOH . L 6 HOH B 40 234 65 HOH HOH . L 6 HOH B 41 235 235 HOH HOH . L 6 HOH B 42 236 67 HOH HOH . L 6 HOH B 43 237 69 HOH HOH . L 6 HOH B 44 238 70 HOH HOH . L 6 HOH B 45 239 71 HOH HOH . L 6 HOH B 46 240 73 HOH HOH . L 6 HOH B 47 241 77 HOH HOH . L 6 HOH B 48 242 78 HOH HOH . L 6 HOH B 49 243 80 HOH HOH . L 6 HOH B 50 244 84 HOH HOH . L 6 HOH B 51 245 85 HOH HOH . L 6 HOH B 52 246 88 HOH HOH . L 6 HOH B 53 247 90 HOH HOH . L 6 HOH B 54 248 93 HOH HOH . L 6 HOH B 55 249 96 HOH HOH . L 6 HOH B 56 250 102 HOH HOH . L 6 HOH B 57 251 103 HOH HOH . L 6 HOH B 58 252 105 HOH HOH . L 6 HOH B 59 253 106 HOH HOH . L 6 HOH B 60 254 108 HOH HOH . L 6 HOH B 61 255 110 HOH HOH . L 6 HOH B 62 256 112 HOH HOH . L 6 HOH B 63 257 117 HOH HOH . L 6 HOH B 64 258 118 HOH HOH . L 6 HOH B 65 259 119 HOH HOH . L 6 HOH B 66 260 121 HOH HOH . L 6 HOH B 67 261 127 HOH HOH . L 6 HOH B 68 262 128 HOH HOH . L 6 HOH B 69 263 131 HOH HOH . L 6 HOH B 70 264 132 HOH HOH . L 6 HOH B 71 265 133 HOH HOH . L 6 HOH B 72 266 137 HOH HOH . L 6 HOH B 73 267 138 HOH HOH . L 6 HOH B 74 268 139 HOH HOH . L 6 HOH B 75 269 140 HOH HOH . L 6 HOH B 76 270 141 HOH HOH . L 6 HOH B 77 271 144 HOH HOH . L 6 HOH B 78 272 145 HOH HOH . L 6 HOH B 79 273 147 HOH HOH . L 6 HOH B 80 274 148 HOH HOH . L 6 HOH B 81 275 149 HOH HOH . L 6 HOH B 82 276 151 HOH HOH . L 6 HOH B 83 277 153 HOH HOH . L 6 HOH B 84 278 155 HOH HOH . L 6 HOH B 85 279 159 HOH HOH . L 6 HOH B 86 280 160 HOH HOH . L 6 HOH B 87 281 161 HOH HOH . L 6 HOH B 88 282 164 HOH HOH . L 6 HOH B 89 283 167 HOH HOH . L 6 HOH B 90 284 168 HOH HOH . L 6 HOH B 91 285 170 HOH HOH . L 6 HOH B 92 286 178 HOH HOH . L 6 HOH B 93 287 180 HOH HOH . L 6 HOH B 94 288 183 HOH HOH . L 6 HOH B 95 289 184 HOH HOH . L 6 HOH B 96 290 187 HOH HOH . L 6 HOH B 97 291 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QLR . . . I 3 19.249 -35.494 7.737 1 21.38 ? N1 QLR 194 B 1 HETATM 2 C C2 QLR . . . I 3 18.783 -34.292 7.321 1 21.09 ? C2 QLR 194 B 1 HETATM 3 N N3 QLR . . . I 3 18.134 -33.497 8.183 1 20.49 ? N3 QLR 194 B 1 HETATM 4 C C4 QLR . . . I 3 17.948 -33.859 9.468 1 21.28 ? C4 QLR 194 B 1 HETATM 5 C C5 QLR . . . I 3 18.423 -35.09 9.918 1 21.27 ? C5 QLR 194 B 1 HETATM 6 C C6 QLR . . . I 3 19.094 -35.916 9.015 1 22.01 ? C6 QLR 194 B 1 HETATM 7 C CAA QLR . . . I 3 18.058 -35.163 16.242 1 18.36 ? CAA QLR 194 B 1 HETATM 8 C CAB QLR . . . I 3 17.078 -40.931 15.715 1 29.01 ? CAB QLR 194 B 1 HETATM 9 C CAC QLR . . . I 3 22.594 -37.628 12.821 1 27.86 ? CAC QLR 194 B 1 HETATM 10 C CAD QLR . . . I 3 21.699 -41.231 14.22 1 30.53 ? CAD QLR 194 B 1 HETATM 11 C CAE QLR . . . I 3 19.652 -37.285 9.468 1 20.63 ? CAE QLR 194 B 1 HETATM 12 N NAF QLR . . . I 3 18.955 -33.887 6.048 1 20.37 ? NAF QLR 194 B 1 HETATM 13 N NAG QLR . . . I 3 17.301 -33.045 10.305 1 20.15 ? NAG QLR 194 B 1 HETATM 14 C CAH QLR . . . I 3 18.22 -35.482 11.284 1 20.57 ? CAH QLR 194 B 1 HETATM 15 C CAI QLR . . . I 3 18.029 -35.799 12.448 1 21.26 ? CAI QLR 194 B 1 HETATM 16 C CAJ QLR . . . I 3 18.126 -38.412 14.951 1 26.21 ? CAJ QLR 194 B 1 HETATM 17 C CAK QLR . . . I 3 20.023 -37.332 13.896 1 26.52 ? CAK QLR 194 B 1 HETATM 18 C CAL QLR . . . I 3 18.071 -34.897 14.713 1 21.01 ? CAL QLR 194 B 1 HETATM 19 O OAO QLR . . . I 3 18.455 -40.588 16 1 27.93 ? OAO QLR 194 B 1 HETATM 20 O OAP QLR . . . I 3 22.172 -38.437 13.918 1 27.38 ? OAP QLR 194 B 1 HETATM 21 O OAQ QLR . . . I 3 21.048 -40.554 15.325 1 27.37 ? OAQ QLR 194 B 1 HETATM 22 C CAU QLR . . . I 3 18.672 -37.333 14.248 1 25.78 ? CAU QLR 194 B 1 HETATM 23 C CAW QLR . . . I 3 18.937 -39.501 15.301 1 28.06 ? CAW QLR 194 B 1 HETATM 24 C CAX QLR . . . I 3 20.838 -38.414 14.243 1 27.67 ? CAX QLR 194 B 1 HETATM 25 C CAY QLR . . . I 3 20.287 -39.494 14.946 1 26.61 ? CAY QLR 194 B 1 HETATM 26 C CAZ QLR . . . I 3 17.78 -36.142 13.855 1 22.5 ? CAZ QLR 194 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #