data_3QLT # _model_server_result.job_id Fh7si4MxkIBEwl5okVa0JA _model_server_result.datetime_utc '2024-12-27 00:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":396}' # _entry.id 3QLT # _exptl.entry_id 3QLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLT _cell.length_a 191.805 _cell.length_b 191.805 _cell.length_c 47.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 316 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 65 B CYS 65 1_555 B SG CYS 316 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 213 A ASN 213 1_555 C C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 347 A ASN 347 1_555 D C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 213 B ASN 213 1_555 E C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 244 B ASN 244 1_555 F C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 347 B ASN 347 1_555 G C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 B ND2 ASN 381 B ASN 381 1_555 H C1 NAG . B NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3QLT _atom_sites.fract_transf_matrix[1][1] 0.005214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 396 1 NAG NAG . D 2 NAG A 1 397 2 NAG NAG . E 2 NAG B 1 396 3 NAG NAG . F 2 NAG B 1 397 4 NAG NAG . G 2 NAG B 1 398 5 NAG NAG . H 2 NAG B 1 399 6 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 -7.21 -17.908 6.409 1 149.77 ? C1 NAG 396 B 1 HETATM 2 C C2 NAG . . . E 2 -7.978 -16.706 6.962 1 170.01 ? C2 NAG 396 B 1 HETATM 3 C C3 NAG . . . E 2 -7.586 -16.351 8.392 1 185.34 ? C3 NAG 396 B 1 HETATM 4 C C4 NAG . . . E 2 -7.555 -17.597 9.259 1 182.93 ? C4 NAG 396 B 1 HETATM 5 C C5 NAG . . . E 2 -6.675 -18.645 8.597 1 168.83 ? C5 NAG 396 B 1 HETATM 6 C C6 NAG . . . E 2 -6.541 -19.889 9.471 1 166.94 ? C6 NAG 396 B 1 HETATM 7 C C7 NAG . . . E 2 -8.752 -14.669 5.916 1 186.5 ? C7 NAG 396 B 1 HETATM 8 C C8 NAG . . . E 2 -8.359 -13.228 5.812 1 173.94 ? C8 NAG 396 B 1 HETATM 9 N N2 NAG . . . E 2 -7.774 -15.546 6.12 1 173.43 ? N2 NAG 396 B 1 HETATM 10 O O3 NAG . . . E 2 -8.509 -15.428 8.926 1 198.92 ? O3 NAG 396 B 1 HETATM 11 O O4 NAG . . . E 2 -7.042 -17.276 10.533 1 188.88 ? O4 NAG 396 B 1 HETATM 12 O O5 NAG . . . E 2 -7.208 -18.982 7.332 1 156.74 ? O5 NAG 396 B 1 HETATM 13 O O6 NAG . . . E 2 -7.794 -20.509 9.652 1 162.46 ? O6 NAG 396 B 1 HETATM 14 O O7 NAG . . . E 2 -9.933 -14.999 5.821 1 206.04 ? O7 NAG 396 B 1 HETATM 15 H H2 NAG . . . E 2 -9.041 -16.95 6.965 1 204.01 ? H2 NAG 396 B 1 HETATM 16 H H3 NAG . . . E 2 -6.593 -15.903 8.374 1 222.41 ? H3 NAG 396 B 1 HETATM 17 H H4 NAG . . . E 2 -8.574 -17.97 9.362 1 219.52 ? H4 NAG 396 B 1 HETATM 18 H H5 NAG . . . E 2 -5.683 -18.218 8.453 1 202.6 ? H5 NAG 396 B 1 HETATM 19 H H61 NAG . . . E 2 -6.124 -19.609 10.439 1 200.33 ? H61 NAG 396 B 1 HETATM 20 H H62 NAG . . . E 2 -5.852 -20.591 9 1 200.33 ? H62 NAG 396 B 1 HETATM 21 H H81 NAG . . . E 2 -8.857 -12.657 6.596 1 208.73 ? H81 NAG 396 B 1 HETATM 22 H H82 NAG . . . E 2 -8.654 -12.84 4.837 1 208.73 ? H82 NAG 396 B 1 HETATM 23 H H83 NAG . . . E 2 -7.278 -13.137 5.926 1 208.73 ? H83 NAG 396 B 1 HETATM 24 H HN2 NAG . . . E 2 -6.838 -15.341 5.799 1 208.11 ? HN2 NAG 396 B 1 HETATM 25 H HO3 NAG . . . E 2 -9.194 -15.225 8.255 1 238.7 ? HO3 NAG 396 B 1 HETATM 26 H HO4 NAG . . . E 2 -6.823 -16.321 10.565 1 226.65 ? HO4 NAG 396 B 1 HETATM 27 H HO6 NAG . . . E 2 -8.483 -20.002 9.174 1 194.95 ? HO6 NAG 396 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #