data_3QLT # _model_server_result.job_id jWNhPsTOTx4y6xZ2KJYi9Q _model_server_result.datetime_utc '2024-12-27 00:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":397}' # _entry.id 3QLT # _exptl.entry_id 3QLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLT _cell.length_a 191.805 _cell.length_b 191.805 _cell.length_c 47.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 316 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 65 B CYS 65 1_555 B SG CYS 316 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 213 A ASN 213 1_555 C C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 347 A ASN 347 1_555 D C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 213 B ASN 213 1_555 E C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 244 B ASN 244 1_555 F C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 347 B ASN 347 1_555 G C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 B ND2 ASN 381 B ASN 381 1_555 H C1 NAG . B NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3QLT _atom_sites.fract_transf_matrix[1][1] 0.005214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 396 1 NAG NAG . D 2 NAG A 1 397 2 NAG NAG . E 2 NAG B 1 396 3 NAG NAG . F 2 NAG B 1 397 4 NAG NAG . G 2 NAG B 1 398 5 NAG NAG . H 2 NAG B 1 399 6 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 2 -4.121 -13.494 -17.313 1 134.28 ? C1 NAG 397 B 1 HETATM 2 C C2 NAG . . . F 2 -2.642 -13.518 -17.694 1 151.39 ? C2 NAG 397 B 1 HETATM 3 C C3 NAG . . . F 2 -2.098 -12.142 -18.052 1 174.46 ? C3 NAG 397 B 1 HETATM 4 C C4 NAG . . . F 2 -3.062 -11.371 -18.94 1 183.37 ? C4 NAG 397 B 1 HETATM 5 C C5 NAG . . . F 2 -4.456 -11.344 -18.324 1 165.97 ? C5 NAG 397 B 1 HETATM 6 C C6 NAG . . . F 2 -5.459 -10.623 -19.222 1 156.31 ? C6 NAG 397 B 1 HETATM 7 C C7 NAG . . . F 2 -0.741 -14.724 -16.774 1 154.19 ? C7 NAG 397 B 1 HETATM 8 C C8 NAG . . . F 2 -0.755 -16.184 -16.437 1 139.48 ? C8 NAG 397 B 1 HETATM 9 N N2 NAG . . . F 2 -1.874 -14.055 -16.587 1 146.55 ? N2 NAG 397 B 1 HETATM 10 O O3 NAG . . . F 2 -0.869 -12.282 -18.73 1 179.68 ? O3 NAG 397 B 1 HETATM 11 O O4 NAG . . . F 2 -2.58 -10.057 -19.106 1 194.89 ? O4 NAG 397 B 1 HETATM 12 O O5 NAG . . . F 2 -4.916 -12.665 -18.139 1 155.02 ? O5 NAG 397 B 1 HETATM 13 O O6 NAG . . . F 2 -5.179 -9.244 -19.306 1 149.94 ? O6 NAG 397 B 1 HETATM 14 O O7 NAG . . . F 2 0.283 -14.193 -17.193 1 174.61 ? O7 NAG 397 B 1 HETATM 15 H H2 NAG . . . F 2 -2.52 -14.177 -18.554 1 181.67 ? H2 NAG 397 B 1 HETATM 16 H H3 NAG . . . F 2 -1.942 -11.584 -17.129 1 209.35 ? H3 NAG 397 B 1 HETATM 17 H H4 NAG . . . F 2 -3.107 -11.867 -19.909 1 220.04 ? H4 NAG 397 B 1 HETATM 18 H H5 NAG . . . F 2 -4.401 -10.812 -17.375 1 199.16 ? H5 NAG 397 B 1 HETATM 19 H H61 NAG . . . F 2 -6.465 -10.756 -18.823 1 187.57 ? H61 NAG 397 B 1 HETATM 20 H H62 NAG . . . F 2 -5.433 -11.061 -20.22 1 187.57 ? H62 NAG 397 B 1 HETATM 21 H H81 NAG . . . F 2 -0.016 -16.385 -15.662 1 167.37 ? H81 NAG 397 B 1 HETATM 22 H H82 NAG . . . F 2 -0.515 -16.765 -17.327 1 167.37 ? H82 NAG 397 B 1 HETATM 23 H H83 NAG . . . F 2 -1.745 -16.465 -16.077 1 167.37 ? H83 NAG 397 B 1 HETATM 24 H HN2 NAG . . . F 2 -2.221 -13.91 -15.65 1 175.86 ? HN2 NAG 397 B 1 HETATM 25 H HO3 NAG . . . F 2 -0.649 -13.233 -18.814 1 215.62 ? HO3 NAG 397 B 1 HETATM 26 H HO4 NAG . . . F 2 -1.74 -9.952 -18.612 1 233.87 ? HO4 NAG 397 B 1 HETATM 27 H HO6 NAG . . . F 2 -4.39 -9.037 -18.764 1 179.93 ? HO6 NAG 397 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #