data_3QLU # _model_server_result.job_id UlJbaocy4Q8VMl9Y2-G2IA _model_server_result.datetime_utc '2024-11-04 22:49:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":398}' # _entry.id 3QLU # _exptl.entry_id 3QLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLU _cell.length_a 65.626 _cell.length_b 139.548 _cell.length_c 195.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,Q,R,S,T,X,Y 1 1 B,D,J,K,L,M,N,O,P,U,V,W,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 64 A CYS 64 1_555 A SG CYS 315 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 146 A CYS 146 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 17 B CYS 17 1_555 B SG CYS 273 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 64 B CYS 64 1_555 B SG CYS 315 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 146 B CYS 146 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 C SG CYS 65 C CYS 65 1_555 C SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 D SG CYS 65 D CYS 65 1_555 D SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 200 A ASN 200 1_555 E C1 NAG . A NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 252 A ASN 252 1_555 F C1 NAG . A NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 266 A ASN 266 1_555 G C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 303 A ASN 303 1_555 H C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 353 A ASN 353 1_555 I C1 NAG . A NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B ND2 ASN 200 B ASN 200 1_555 J C1 NAG . B NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale7 B ND2 ASN 252 B ASN 252 1_555 K C1 NAG . B NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 B ND2 ASN 266 B ASN 266 1_555 L C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 B ND2 ASN 353 B ASN 353 1_555 M C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 B ND2 ASN 375 B ASN 375 1_555 N C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 C ND2 ASN 36 C ASN 36 1_555 Q C1 NAG . C NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 C ND2 ASN 347 C ASN 347 1_555 R C1 NAG . C NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale13 C ND2 ASN 381 C ASN 381 1_555 S C1 NAG . C NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 D ND2 ASN 36 D ASN 36 1_555 U C1 NAG . D NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 D ND2 ASN 213 D ASN 213 1_555 V C1 NAG . D NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 D ND2 ASN 347 D ASN 347 1_555 W C1 NAG . D NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3QLU _atom_sites.fract_transf_matrix[1][1] 0.015238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 394 1 NAG NAG . F 3 NAG A 1 395 2 NAG NAG . G 3 NAG A 1 396 3 NAG NAG . H 3 NAG A 1 397 4 NAG NAG . I 3 NAG A 1 398 5 NAG NAG . J 3 NAG B 1 394 1 NAG NAG . K 3 NAG B 1 395 2 NAG NAG . L 3 NAG B 1 396 3 NAG NAG . M 3 NAG B 1 397 5 NAG NAG . N 3 NAG B 1 398 6 NAG NAG . O 4 CL B 1 399 1 CL CL . P 5 GOL B 1 400 1 GOL GOL . Q 3 NAG C 1 396 1 NAG NAG . R 3 NAG C 1 397 3 NAG NAG . S 3 NAG C 1 398 4 NAG NAG . T 4 CL C 1 399 2 CL CL . U 3 NAG D 1 396 1 NAG NAG . V 3 NAG D 1 397 2 NAG NAG . W 3 NAG D 1 398 3 NAG NAG . X 6 HOH A 1 399 1 HOH HOH . Y 6 HOH C 1 400 3 HOH HOH . Y 6 HOH C 2 401 4 HOH HOH . Z 6 HOH D 1 399 2 HOH HOH . Z 6 HOH D 2 400 5 HOH HOH . Z 6 HOH D 3 401 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 3 -2.169 29.486 25.635 1 88.62 ? C1 NAG 398 A 1 HETATM 2 C C2 NAG . . . I 3 -3.003 29.782 26.883 1 87.87 ? C2 NAG 398 A 1 HETATM 3 C C3 NAG . . . I 3 -2.524 31.042 27.584 1 87.71 ? C3 NAG 398 A 1 HETATM 4 C C4 NAG . . . I 3 -1.038 30.896 27.866 1 88.35 ? C4 NAG 398 A 1 HETATM 5 C C5 NAG . . . I 3 -0.298 30.724 26.551 1 84.64 ? C5 NAG 398 A 1 HETATM 6 C C6 NAG . . . I 3 1.201 30.571 26.791 1 76.56 ? C6 NAG 398 A 1 HETATM 7 C C7 NAG . . . I 3 -5.293 29.026 27.182 1 85.13 ? C7 NAG 398 A 1 HETATM 8 C C8 NAG . . . I 3 -6.719 29.483 27.262 1 76.51 ? C8 NAG 398 A 1 HETATM 9 N N2 NAG . . . I 3 -4.428 29.855 26.59 1 81.27 ? N2 NAG 398 A 1 HETATM 10 O O3 NAG . . . I 3 -3.23 31.221 28.791 1 86.16 ? O3 NAG 398 A 1 HETATM 11 O O4 NAG . . . I 3 -0.552 32.042 28.525 1 91 ? O4 NAG 398 A 1 HETATM 12 O O5 NAG . . . I 3 -0.772 29.585 25.861 1 86.45 ? O5 NAG 398 A 1 HETATM 13 O O6 NAG . . . I 3 1.881 30.675 25.559 1 64.74 ? O6 NAG 398 A 1 HETATM 14 O O7 NAG . . . I 3 -4.975 27.932 27.655 1 92.17 ? O7 NAG 398 A 1 HETATM 15 H H2 NAG . . . I 3 -2.837 28.981 27.604 1 105.35 ? H2 NAG 398 A 1 HETATM 16 H H3 NAG . . . I 3 -2.707 31.891 26.926 1 105.15 ? H3 NAG 398 A 1 HETATM 17 H H4 NAG . . . I 3 -0.894 30.023 28.502 1 105.92 ? H4 NAG 398 A 1 HETATM 18 H H5 NAG . . . I 3 -0.459 31.617 25.947 1 101.47 ? H5 NAG 398 A 1 HETATM 19 H H61 NAG . . . I 3 1.395 29.612 27.272 1 91.77 ? H61 NAG 398 A 1 HETATM 20 H H62 NAG . . . I 3 1.543 31.358 27.463 1 91.77 ? H62 NAG 398 A 1 HETATM 21 H H81 NAG . . . I 3 -7.024 29.543 28.307 1 91.72 ? H81 NAG 398 A 1 HETATM 22 H H82 NAG . . . I 3 -7.358 28.773 26.737 1 91.72 ? H82 NAG 398 A 1 HETATM 23 H H83 NAG . . . I 3 -6.812 30.466 26.8 1 91.72 ? H83 NAG 398 A 1 HETATM 24 H HN2 NAG . . . I 3 -4.767 30.629 26.037 1 97.43 ? HN2 NAG 398 A 1 HETATM 25 H HO3 NAG . . . I 3 -3.872 30.49 28.905 1 103.29 ? HO3 NAG 398 A 1 HETATM 26 H HO4 NAG . . . I 3 -1.285 32.68 28.654 1 109.11 ? HO4 NAG 398 A 1 HETATM 27 H HO6 NAG . . . I 3 1.232 30.821 24.839 1 77.58 ? HO6 NAG 398 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #