data_3QLU
#
_model_server_result.job_id            '_t_YdhO_dEfTn8td0UuKeQ' 
_model_server_result.datetime_utc      '2024-11-04 22:51:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qlu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":398}' 
#
_entry.id    3QLU 
#
_exptl.entry_id    3QLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QLU 
_cell.length_a            65.626 
_cell.length_b            139.548 
_cell.length_c            195.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,Q,R,S,T,X,Y 1 1 
B,D,J,K,L,M,N,O,P,U,V,W,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 64 A CYS 64 1_555 A SG CYS 315 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 146 A CYS 146 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 B SG CYS 17 B CYS 17 1_555 B SG CYS 273 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 64 B CYS 64 1_555 B SG CYS 315 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 146 B CYS 146 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf7 C SG CYS 65 C CYS 65 1_555 C SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 65 D CYS 65 1_555 D SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 200 A ASN 200 1_555 E C1 NAG . A NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 252 A ASN 252 1_555 F C1 NAG . A NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 266 A ASN 266 1_555 G C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 A ND2 ASN 303 A ASN 303 1_555 H C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 353 A ASN 353 1_555 I C1 NAG . A NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 B ND2 ASN 200 B ASN 200 1_555 J C1 NAG . B NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale7 B ND2 ASN 252 B ASN 252 1_555 K C1 NAG . B NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale8 B ND2 ASN 266 B ASN 266 1_555 L C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 B ND2 ASN 353 B ASN 353 1_555 M C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale10 B ND2 ASN 375 B ASN 375 1_555 N C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale11 C ND2 ASN 36 C ASN 36 1_555 Q C1 NAG . C NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale12 C ND2 ASN 347 C ASN 347 1_555 R C1 NAG . C NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale13 C ND2 ASN 381 C ASN 381 1_555 S C1 NAG . C NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale14 D ND2 ASN 36 D ASN 36 1_555 U C1 NAG . D NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale15 D ND2 ASN 213 D ASN 213 1_555 V C1 NAG . D NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale16 D ND2 ASN 347 D ASN 347 1_555 W C1 NAG . D NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3QLU 
_atom_sites.fract_transf_matrix[1][1]    0.015238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 394 1 NAG NAG . 
F 3 NAG A 1 395 2 NAG NAG . 
G 3 NAG A 1 396 3 NAG NAG . 
H 3 NAG A 1 397 4 NAG NAG . 
I 3 NAG A 1 398 5 NAG NAG . 
J 3 NAG B 1 394 1 NAG NAG . 
K 3 NAG B 1 395 2 NAG NAG . 
L 3 NAG B 1 396 3 NAG NAG . 
M 3 NAG B 1 397 5 NAG NAG . 
N 3 NAG B 1 398 6 NAG NAG . 
O 4 CL B 1 399 1 CL CL . 
P 5 GOL B 1 400 1 GOL GOL . 
Q 3 NAG C 1 396 1 NAG NAG . 
R 3 NAG C 1 397 3 NAG NAG . 
S 3 NAG C 1 398 4 NAG NAG . 
T 4 CL C 1 399 2 CL CL . 
U 3 NAG D 1 396 1 NAG NAG . 
V 3 NAG D 1 397 2 NAG NAG . 
W 3 NAG D 1 398 3 NAG NAG . 
X 6 HOH A 1 399 1 HOH HOH . 
Y 6 HOH C 1 400 3 HOH HOH . 
Y 6 HOH C 2 401 4 HOH HOH . 
Z 6 HOH D 1 399 2 HOH HOH . 
Z 6 HOH D 2 400 5 HOH HOH . 
Z 6 HOH D 3 401 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . S 3 -15.414 0.952 -30.144 1 48.76 ? C1 NAG 398 C 1 
HETATM 2 C C2 NAG . . . S 3 -14.234 -0.026 -30.162 1 63.29 ? C2 NAG 398 C 1 
HETATM 3 C C3 NAG . . . S 3 -14.536 -1.353 -30.831 1 88.63 ? C3 NAG 398 C 1 
HETATM 4 C C4 NAG . . . S 3 -15.805 -1.909 -30.233 1 97.32 ? C4 NAG 398 C 1 
HETATM 5 C C5 NAG . . . S 3 -16.96 -0.92 -30.394 1 87.89 ? C5 NAG 398 C 1 
HETATM 6 C C6 NAG . . . S 3 -18.191 -1.449 -29.667 1 100.1 ? C6 NAG 398 C 1 
HETATM 7 C C7 NAG . . . S 3 -11.89 0.201 -30.397 1 102.46 ? C7 NAG 398 C 1 
HETATM 8 C C8 NAG . . . S 3 -10.828 -0.05 -31.418 1 110.79 ? C8 NAG 398 C 1 
HETATM 9 N N2 NAG . . . S 3 -13.089 0.528 -30.854 1 69.59 ? N2 NAG 398 C 1 
HETATM 10 O O3 NAG . . . S 3 -13.48 -2.277 -30.645 1 87.13 ? O3 NAG 398 C 1 
HETATM 11 O O4 NAG . . . S 3 -16.123 -3.097 -30.922 1 102.74 ? O4 NAG 398 C 1 
HETATM 12 O O5 NAG . . . S 3 -16.687 0.377 -29.892 1 55.97 ? O5 NAG 398 C 1 
HETATM 13 O O6 NAG . . . S 3 -17.903 -1.664 -28.305 1 107.39 ? O6 NAG 398 C 1 
HETATM 14 O O7 NAG . . . S 3 -11.648 0.066 -29.199 1 117.06 ? O7 NAG 398 C 1 
HETATM 15 H H2 NAG . . . S 3 -13.948 -0.237 -29.132 1 75.84 ? H2 NAG 398 C 1 
HETATM 16 H H3 NAG . . . S 3 -14.679 -1.175 -31.897 1 106.26 ? H3 NAG 398 C 1 
HETATM 17 H H4 NAG . . . S 3 -15.618 -2.136 -29.183 1 116.68 ? H4 NAG 398 C 1 
HETATM 18 H H5 NAG . . . S 3 -17.196 -0.839 -31.455 1 105.37 ? H5 NAG 398 C 1 
HETATM 19 H H61 NAG . . . S 3 -18.515 -2.379 -30.133 1 120.02 ? H61 NAG 398 C 1 
HETATM 20 H H62 NAG . . . S 3 -19.003 -0.728 -29.758 1 120.02 ? H62 NAG 398 C 1 
HETATM 21 H H81 NAG . . . S 3 -10.458 -1.07 -31.315 1 132.85 ? H81 NAG 398 C 1 
HETATM 22 H H82 NAG . . . S 3 -10.007 0.651 -31.268 1 132.85 ? H82 NAG 398 C 1 
HETATM 23 H H83 NAG . . . S 3 -11.244 0.087 -32.417 1 132.85 ? H83 NAG 398 C 1 
HETATM 24 H HN2 NAG . . . S 3 -13.202 0.82 -31.814 1 83.4 ? HN2 NAG 398 C 1 
HETATM 25 H HO3 NAG . . . S 3 -12.769 -1.858 -30.117 1 104.46 ? HO3 NAG 398 C 1 
HETATM 26 H HO4 NAG . . . S 3 -15.447 -3.265 -31.612 1 123.19 ? HO4 NAG 398 C 1 
HETATM 27 H HO6 NAG . . . S 3 -16.97 -1.425 -28.126 1 128.77 ? HO6 NAG 398 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#