data_3QLU
#
_model_server_result.job_id            ajiQyut8MJoqNsbwjh7VCA 
_model_server_result.datetime_utc      '2024-11-04 22:50:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qlu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":400}' 
#
_entry.id    3QLU 
#
_exptl.entry_id    3QLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QLU 
_cell.length_a            65.626 
_cell.length_b            139.548 
_cell.length_c            195.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,Q,R,S,T,X,Y 1 1 
B,D,J,K,L,M,N,O,P,U,V,W,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 64 A CYS 64 1_555 A SG CYS 315 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 146 A CYS 146 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 B SG CYS 17 B CYS 17 1_555 B SG CYS 273 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 64 B CYS 64 1_555 B SG CYS 315 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 146 B CYS 146 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf7 C SG CYS 65 C CYS 65 1_555 C SG CYS 316 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 65 D CYS 65 1_555 D SG CYS 316 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 200 A ASN 200 1_555 E C1 NAG . A NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 252 A ASN 252 1_555 F C1 NAG . A NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 266 A ASN 266 1_555 G C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 A ND2 ASN 303 A ASN 303 1_555 H C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 353 A ASN 353 1_555 I C1 NAG . A NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 B ND2 ASN 200 B ASN 200 1_555 J C1 NAG . B NAG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale7 B ND2 ASN 252 B ASN 252 1_555 K C1 NAG . B NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale8 B ND2 ASN 266 B ASN 266 1_555 L C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 B ND2 ASN 353 B ASN 353 1_555 M C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale10 B ND2 ASN 375 B ASN 375 1_555 N C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale11 C ND2 ASN 36 C ASN 36 1_555 Q C1 NAG . C NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale12 C ND2 ASN 347 C ASN 347 1_555 R C1 NAG . C NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale13 C ND2 ASN 381 C ASN 381 1_555 S C1 NAG . C NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale14 D ND2 ASN 36 D ASN 36 1_555 U C1 NAG . D NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale15 D ND2 ASN 213 D ASN 213 1_555 V C1 NAG . D NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale16 D ND2 ASN 347 D ASN 347 1_555 W C1 NAG . D NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3QLU 
_atom_sites.fract_transf_matrix[1][1]    0.015238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 394 1 NAG NAG . 
F 3 NAG A 1 395 2 NAG NAG . 
G 3 NAG A 1 396 3 NAG NAG . 
H 3 NAG A 1 397 4 NAG NAG . 
I 3 NAG A 1 398 5 NAG NAG . 
J 3 NAG B 1 394 1 NAG NAG . 
K 3 NAG B 1 395 2 NAG NAG . 
L 3 NAG B 1 396 3 NAG NAG . 
M 3 NAG B 1 397 5 NAG NAG . 
N 3 NAG B 1 398 6 NAG NAG . 
O 4 CL B 1 399 1 CL CL . 
P 5 GOL B 1 400 1 GOL GOL . 
Q 3 NAG C 1 396 1 NAG NAG . 
R 3 NAG C 1 397 3 NAG NAG . 
S 3 NAG C 1 398 4 NAG NAG . 
T 4 CL C 1 399 2 CL CL . 
U 3 NAG D 1 396 1 NAG NAG . 
V 3 NAG D 1 397 2 NAG NAG . 
W 3 NAG D 1 398 3 NAG NAG . 
X 6 HOH A 1 399 1 HOH HOH . 
Y 6 HOH C 1 400 3 HOH HOH . 
Y 6 HOH C 2 401 4 HOH HOH . 
Z 6 HOH D 1 399 2 HOH HOH . 
Z 6 HOH D 2 400 5 HOH HOH . 
Z 6 HOH D 3 401 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 5 23.827 -7.622 34.392 1 25.33 ? C1 GOL 400 B 1 
HETATM 2 O O1 GOL . . . P 5 24.843 -8.357 35.021 1 33.35 ? O1 GOL 400 B 1 
HETATM 3 C C2 GOL . . . P 5 23.015 -7.049 35.53 1 51.05 ? C2 GOL 400 B 1 
HETATM 4 O O2 GOL . . . P 5 22.693 -8.146 36.349 1 68.59 ? O2 GOL 400 B 1 
HETATM 5 C C3 GOL . . . P 5 21.755 -6.348 35.034 1 55.72 ? C3 GOL 400 B 1 
HETATM 6 O O3 GOL . . . P 5 21.296 -5.437 36.009 1 41.49 ? O3 GOL 400 B 1 
HETATM 7 H H11 GOL . . . P 5 24.249 -6.825 33.78 1 30.29 ? H11 GOL 400 B 1 
HETATM 8 H H12 GOL . . . P 5 23.213 -8.269 33.767 1 30.29 ? H12 GOL 400 B 1 
HETATM 9 H HO1 GOL . . . P 5 25.38 -8.818 34.342 1 39.92 ? HO1 GOL 400 B 1 
HETATM 10 H H2 GOL . . . P 5 23.627 -6.335 36.081 1 61.16 ? H2 GOL 400 B 1 
HETATM 11 H HO2 GOL . . . P 5 22.171 -7.838 37.119 1 82.21 ? HO2 GOL 400 B 1 
HETATM 12 H H31 GOL . . . P 5 21.971 -5.816 34.107 1 66.76 ? H31 GOL 400 B 1 
HETATM 13 H H32 GOL . . . P 5 20.98 -7.086 34.828 1 66.76 ? H32 GOL 400 B 1 
HETATM 14 H HO3 GOL . . . P 5 21.377 -5.842 36.898 1 49.69 ? HO3 GOL 400 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#