data_3QLX # _model_server_result.job_id 8_MnpsE4pkrIdcyaNsWROA _model_server_result.datetime_utc '2024-11-07 12:39:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":228}' # _entry.id 3QLX # _exptl.entry_id 3QLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLX _cell.length_a 42.757 _cell.length_b 42.757 _cell.length_c 232.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 3QLX _atom_sites.fract_transf_matrix[1][1] 0.023388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 207 NDP NDP . D 3 QLR A 1 229 1 QLR QLR . E 2 NDP B 1 228 207 NDP NDP . F 3 QLR B 1 229 1 QLR QLR . G 4 HOH A 1 230 1 HOH HOH . G 4 HOH A 2 231 3 HOH HOH . G 4 HOH A 3 232 4 HOH HOH . G 4 HOH A 4 233 8 HOH HOH . G 4 HOH A 5 234 12 HOH HOH . G 4 HOH A 6 235 13 HOH HOH . G 4 HOH A 7 236 14 HOH HOH . G 4 HOH A 8 237 15 HOH HOH . G 4 HOH A 9 238 16 HOH HOH . G 4 HOH A 10 239 18 HOH HOH . G 4 HOH A 11 240 19 HOH HOH . G 4 HOH A 12 241 20 HOH HOH . G 4 HOH A 13 242 21 HOH HOH . G 4 HOH A 14 243 23 HOH HOH . G 4 HOH A 15 244 25 HOH HOH . G 4 HOH A 16 245 29 HOH HOH . G 4 HOH A 17 246 33 HOH HOH . G 4 HOH A 18 247 35 HOH HOH . G 4 HOH A 19 248 37 HOH HOH . G 4 HOH A 20 249 45 HOH HOH . G 4 HOH A 21 250 48 HOH HOH . G 4 HOH A 22 251 55 HOH HOH . G 4 HOH A 23 252 60 HOH HOH . G 4 HOH A 24 253 64 HOH HOH . G 4 HOH A 25 254 67 HOH HOH . G 4 HOH A 26 255 73 HOH HOH . G 4 HOH A 27 256 74 HOH HOH . G 4 HOH A 28 257 79 HOH HOH . G 4 HOH A 29 258 80 HOH HOH . G 4 HOH A 30 259 85 HOH HOH . G 4 HOH A 31 260 86 HOH HOH . G 4 HOH A 32 261 87 HOH HOH . G 4 HOH A 33 262 89 HOH HOH . G 4 HOH A 34 263 107 HOH HOH . G 4 HOH A 35 264 112 HOH HOH . G 4 HOH A 36 265 119 HOH HOH . G 4 HOH A 37 266 123 HOH HOH . G 4 HOH A 38 267 124 HOH HOH . H 4 HOH B 1 230 2 HOH HOH . H 4 HOH B 2 231 5 HOH HOH . H 4 HOH B 3 232 6 HOH HOH . H 4 HOH B 4 233 7 HOH HOH . H 4 HOH B 5 234 9 HOH HOH . H 4 HOH B 6 235 10 HOH HOH . H 4 HOH B 7 236 17 HOH HOH . H 4 HOH B 8 237 22 HOH HOH . H 4 HOH B 9 238 24 HOH HOH . H 4 HOH B 10 239 27 HOH HOH . H 4 HOH B 11 240 28 HOH HOH . H 4 HOH B 12 241 32 HOH HOH . H 4 HOH B 13 242 34 HOH HOH . H 4 HOH B 14 243 38 HOH HOH . H 4 HOH B 15 244 39 HOH HOH . H 4 HOH B 16 245 41 HOH HOH . H 4 HOH B 17 246 43 HOH HOH . H 4 HOH B 18 247 44 HOH HOH . H 4 HOH B 19 248 52 HOH HOH . H 4 HOH B 20 249 56 HOH HOH . H 4 HOH B 21 250 62 HOH HOH . H 4 HOH B 22 251 63 HOH HOH . H 4 HOH B 23 252 69 HOH HOH . H 4 HOH B 24 253 71 HOH HOH . H 4 HOH B 25 254 75 HOH HOH . H 4 HOH B 26 255 77 HOH HOH . H 4 HOH B 27 256 81 HOH HOH . H 4 HOH B 28 257 82 HOH HOH . H 4 HOH B 29 258 93 HOH HOH . H 4 HOH B 30 259 94 HOH HOH . H 4 HOH B 31 260 96 HOH HOH . H 4 HOH B 32 261 100 HOH HOH . H 4 HOH B 33 262 101 HOH HOH . H 4 HOH B 34 263 110 HOH HOH . H 4 HOH B 35 264 111 HOH HOH . H 4 HOH B 36 265 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 25.476 -1.746 -28.822 1 28.55 ? PA NDP 228 B 1 HETATM 2 O O1A NDP . . . E 2 24.555 -0.888 -28.045 1 24.03 ? O1A NDP 228 B 1 HETATM 3 O O2A NDP . . . E 2 26.501 -1.006 -29.557 1 29.61 ? O2A NDP 228 B 1 HETATM 4 O O5B NDP . . . E 2 26.204 -2.755 -27.827 1 26.89 ? O5B NDP 228 B 1 HETATM 5 C C5B NDP . . . E 2 25.471 -3.795 -27.224 1 23.71 ? C5B NDP 228 B 1 HETATM 6 C C4B NDP . . . E 2 26.471 -4.506 -26.311 1 23.26 ? C4B NDP 228 B 1 HETATM 7 O O4B NDP . . . E 2 27.062 -3.597 -25.394 1 22.56 ? O4B NDP 228 B 1 HETATM 8 C C3B NDP . . . E 2 25.882 -5.612 -25.466 1 22.14 ? C3B NDP 228 B 1 HETATM 9 O O3B NDP . . . E 2 25.85 -6.818 -26.215 1 23.55 ? O3B NDP 228 B 1 HETATM 10 C C2B NDP . . . E 2 26.866 -5.658 -24.311 1 23.55 ? C2B NDP 228 B 1 HETATM 11 O O2B NDP . . . E 2 28.082 -6.201 -24.749 1 26.84 ? O2B NDP 228 B 1 HETATM 12 C C1B NDP . . . E 2 27.251 -4.208 -24.126 1 24.73 ? C1B NDP 228 B 1 HETATM 13 N N9A NDP . . . E 2 26.439 -3.564 -23.084 1 21.27 ? N9A NDP 228 B 1 HETATM 14 C C8A NDP . . . E 2 25.139 -3.161 -23.185 1 24.13 ? C8A NDP 228 B 1 HETATM 15 N N7A NDP . . . E 2 24.759 -2.616 -22.003 1 23.04 ? N7A NDP 228 B 1 HETATM 16 C C5A NDP . . . E 2 25.829 -2.648 -21.159 1 24.77 ? C5A NDP 228 B 1 HETATM 17 C C6A NDP . . . E 2 26.015 -2.245 -19.832 1 23.51 ? C6A NDP 228 B 1 HETATM 18 N N6A NDP . . . E 2 25.043 -1.646 -19.135 1 22.3 ? N6A NDP 228 B 1 HETATM 19 N N1A NDP . . . E 2 27.23 -2.451 -19.231 1 27 ? N1A NDP 228 B 1 HETATM 20 C C2A NDP . . . E 2 28.246 -3.07 -19.926 1 27.36 ? C2A NDP 228 B 1 HETATM 21 N N3A NDP . . . E 2 28.039 -3.493 -21.224 1 25.28 ? N3A NDP 228 B 1 HETATM 22 C C4A NDP . . . E 2 26.86 -3.294 -21.826 1 21.63 ? C4A NDP 228 B 1 HETATM 23 O O3 NDP . . . E 2 24.646 -2.775 -29.76 1 27.5 ? O3 NDP 228 B 1 HETATM 24 P PN NDP . . . E 2 23.284 -2.649 -30.587 1 25.65 ? PN NDP 228 B 1 HETATM 25 O O1N NDP . . . E 2 23.218 -3.819 -31.488 1 31.02 ? O1N NDP 228 B 1 HETATM 26 O O2N NDP . . . E 2 22.172 -2.32 -29.669 1 27.38 ? O2N NDP 228 B 1 HETATM 27 O O5D NDP . . . E 2 23.526 -1.378 -31.535 1 26.24 ? O5D NDP 228 B 1 HETATM 28 C C5D NDP . . . E 2 24.378 -1.495 -32.653 1 23.95 ? C5D NDP 228 B 1 HETATM 29 C C4D NDP . . . E 2 23.722 -0.768 -33.811 1 24.52 ? C4D NDP 228 B 1 HETATM 30 O O4D NDP . . . E 2 23.644 0.619 -33.521 1 25.67 ? O4D NDP 228 B 1 HETATM 31 C C3D NDP . . . E 2 24.524 -0.903 -35.08 1 26.25 ? C3D NDP 228 B 1 HETATM 32 O O3D NDP . . . E 2 23.615 -1.122 -36.151 1 28.36 ? O3D NDP 228 B 1 HETATM 33 C C2D NDP . . . E 2 25.129 0.472 -35.267 1 27.11 ? C2D NDP 228 B 1 HETATM 34 O O2D NDP . . . E 2 25.316 0.788 -36.639 1 27.96 ? O2D NDP 228 B 1 HETATM 35 C C1D NDP . . . E 2 24.092 1.357 -34.632 1 22.27 ? C1D NDP 228 B 1 HETATM 36 N N1N NDP . . . E 2 24.633 2.675 -34.259 1 23.65 ? N1N NDP 228 B 1 HETATM 37 C C2N NDP . . . E 2 24.079 3.791 -34.81 1 20.8 ? C2N NDP 228 B 1 HETATM 38 C C3N NDP . . . E 2 24.56 5.048 -34.488 1 25.2 ? C3N NDP 228 B 1 HETATM 39 C C7N NDP . . . E 2 23.979 6.248 -35.149 1 23.72 ? C7N NDP 228 B 1 HETATM 40 O O7N NDP . . . E 2 24.341 7.521 -34.685 1 25.95 ? O7N NDP 228 B 1 HETATM 41 N N7N NDP . . . E 2 23.122 6.096 -36.156 1 26.15 ? N7N NDP 228 B 1 HETATM 42 C C4N NDP . . . E 2 25.645 5.184 -33.607 1 24.5 ? C4N NDP 228 B 1 HETATM 43 C C5N NDP . . . E 2 26.207 4.035 -33.054 1 25.09 ? C5N NDP 228 B 1 HETATM 44 C C6N NDP . . . E 2 25.708 2.778 -33.397 1 24.78 ? C6N NDP 228 B 1 HETATM 45 P P2B NDP . . . E 2 28.463 -7.739 -24.539 1 28.8 ? P2B NDP 228 B 1 HETATM 46 O O1X NDP . . . E 2 27.507 -8.517 -25.427 1 24.35 ? O1X NDP 228 B 1 HETATM 47 O O2X NDP . . . E 2 29.9 -7.958 -24.963 1 33.42 ? O2X NDP 228 B 1 HETATM 48 O O3X NDP . . . E 2 28.362 -8.058 -23.087 1 23.14 ? O3X NDP 228 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #