data_3QLX # _model_server_result.job_id lDrHcxxBcTSx1WAVp0tceQ _model_server_result.datetime_utc '2024-11-07 12:38:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":229}' # _entry.id 3QLX # _exptl.entry_id 3QLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLX _cell.length_a 42.757 _cell.length_b 42.757 _cell.length_c 232.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H24 N4 O3' _chem_comp.formula_weight 356.419 _chem_comp.id QLR _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 QLR doub 359 n y N1 C6 QLR sing 360 n y NAF C2 QLR sing 361 n n C2 N3 QLR sing 362 n y N3 C4 QLR doub 363 n y C4 NAG QLR sing 364 n n C4 C5 QLR sing 365 n y C6 C5 QLR doub 366 n y C5 CAH QLR sing 367 n n C6 CAE QLR sing 368 n n CAL CAA QLR sing 369 n n CAA HAA QLR sing 370 n n CAA HAAA QLR sing 371 n n CAA HAAB QLR sing 372 n n OAO CAB QLR sing 373 n n CAB HAB QLR sing 374 n n CAB HABA QLR sing 375 n n CAB HABB QLR sing 376 n n OAP CAC QLR sing 377 n n CAC HAC QLR sing 378 n n CAC HACA QLR sing 379 n n CAC HACB QLR sing 380 n n CAD OAQ QLR sing 381 n n CAD HAD QLR sing 382 n n CAD HADA QLR sing 383 n n CAD HADB QLR sing 384 n n CAE HAE QLR sing 385 n n CAE HAEA QLR sing 386 n n CAE HAEB QLR sing 387 n n NAF HNAF QLR sing 388 n n NAF HNAA QLR sing 389 n n NAG HNAG QLR sing 390 n n NAG HNAB QLR sing 391 n n CAH CAI QLR trip 392 n n CAI CAZ QLR sing 393 n n CAU CAJ QLR doub 394 n y CAJ CAW QLR sing 395 n y CAJ HAJ QLR sing 396 n n CAU CAK QLR sing 397 n y CAK CAX QLR doub 398 n y CAK HAK QLR sing 399 n n CAZ CAL QLR sing 400 n n CAL HAL QLR sing 401 n n CAL HALA QLR sing 402 n n CAW OAO QLR sing 403 n n CAX OAP QLR sing 404 n n CAY OAQ QLR sing 405 n n CAZ CAU QLR sing 406 n n CAW CAY QLR doub 407 n y CAX CAY QLR sing 408 n y CAZ HAZ QLR sing 409 n n # _atom_sites.entry_id 3QLX _atom_sites.fract_transf_matrix[1][1] 0.023388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 207 NDP NDP . D 3 QLR A 1 229 1 QLR QLR . E 2 NDP B 1 228 207 NDP NDP . F 3 QLR B 1 229 1 QLR QLR . G 4 HOH A 1 230 1 HOH HOH . G 4 HOH A 2 231 3 HOH HOH . G 4 HOH A 3 232 4 HOH HOH . G 4 HOH A 4 233 8 HOH HOH . G 4 HOH A 5 234 12 HOH HOH . G 4 HOH A 6 235 13 HOH HOH . G 4 HOH A 7 236 14 HOH HOH . G 4 HOH A 8 237 15 HOH HOH . G 4 HOH A 9 238 16 HOH HOH . G 4 HOH A 10 239 18 HOH HOH . G 4 HOH A 11 240 19 HOH HOH . G 4 HOH A 12 241 20 HOH HOH . G 4 HOH A 13 242 21 HOH HOH . G 4 HOH A 14 243 23 HOH HOH . G 4 HOH A 15 244 25 HOH HOH . G 4 HOH A 16 245 29 HOH HOH . G 4 HOH A 17 246 33 HOH HOH . G 4 HOH A 18 247 35 HOH HOH . G 4 HOH A 19 248 37 HOH HOH . G 4 HOH A 20 249 45 HOH HOH . G 4 HOH A 21 250 48 HOH HOH . G 4 HOH A 22 251 55 HOH HOH . G 4 HOH A 23 252 60 HOH HOH . G 4 HOH A 24 253 64 HOH HOH . G 4 HOH A 25 254 67 HOH HOH . G 4 HOH A 26 255 73 HOH HOH . G 4 HOH A 27 256 74 HOH HOH . G 4 HOH A 28 257 79 HOH HOH . G 4 HOH A 29 258 80 HOH HOH . G 4 HOH A 30 259 85 HOH HOH . G 4 HOH A 31 260 86 HOH HOH . G 4 HOH A 32 261 87 HOH HOH . G 4 HOH A 33 262 89 HOH HOH . G 4 HOH A 34 263 107 HOH HOH . G 4 HOH A 35 264 112 HOH HOH . G 4 HOH A 36 265 119 HOH HOH . G 4 HOH A 37 266 123 HOH HOH . G 4 HOH A 38 267 124 HOH HOH . H 4 HOH B 1 230 2 HOH HOH . H 4 HOH B 2 231 5 HOH HOH . H 4 HOH B 3 232 6 HOH HOH . H 4 HOH B 4 233 7 HOH HOH . H 4 HOH B 5 234 9 HOH HOH . H 4 HOH B 6 235 10 HOH HOH . H 4 HOH B 7 236 17 HOH HOH . H 4 HOH B 8 237 22 HOH HOH . H 4 HOH B 9 238 24 HOH HOH . H 4 HOH B 10 239 27 HOH HOH . H 4 HOH B 11 240 28 HOH HOH . H 4 HOH B 12 241 32 HOH HOH . H 4 HOH B 13 242 34 HOH HOH . H 4 HOH B 14 243 38 HOH HOH . H 4 HOH B 15 244 39 HOH HOH . H 4 HOH B 16 245 41 HOH HOH . H 4 HOH B 17 246 43 HOH HOH . H 4 HOH B 18 247 44 HOH HOH . H 4 HOH B 19 248 52 HOH HOH . H 4 HOH B 20 249 56 HOH HOH . H 4 HOH B 21 250 62 HOH HOH . H 4 HOH B 22 251 63 HOH HOH . H 4 HOH B 23 252 69 HOH HOH . H 4 HOH B 24 253 71 HOH HOH . H 4 HOH B 25 254 75 HOH HOH . H 4 HOH B 26 255 77 HOH HOH . H 4 HOH B 27 256 81 HOH HOH . H 4 HOH B 28 257 82 HOH HOH . H 4 HOH B 29 258 93 HOH HOH . H 4 HOH B 30 259 94 HOH HOH . H 4 HOH B 31 260 96 HOH HOH . H 4 HOH B 32 261 100 HOH HOH . H 4 HOH B 33 262 101 HOH HOH . H 4 HOH B 34 263 110 HOH HOH . H 4 HOH B 35 264 111 HOH HOH . H 4 HOH B 36 265 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QLR . . . D 3 10.912 -5.277 3.927 1 27.43 ? N1 QLR 229 A 1 HETATM 2 C C2 QLR . . . D 3 10.466 -4.734 2.788 1 27.89 ? C2 QLR 229 A 1 HETATM 3 N N3 QLR . . . D 3 11.174 -4.854 1.636 1 25.72 ? N3 QLR 229 A 1 HETATM 4 C C4 QLR . . . D 3 12.321 -5.567 1.59 1 26.74 ? C4 QLR 229 A 1 HETATM 5 C C5 QLR . . . D 3 12.821 -6.108 2.792 1 29.54 ? C5 QLR 229 A 1 HETATM 6 C C6 QLR . . . D 3 12.081 -5.954 3.963 1 28.55 ? C6 QLR 229 A 1 HETATM 7 C CAA QLR . . . D 3 16.419 -9.728 1.096 1 35.31 ? CAA QLR 229 A 1 HETATM 8 C CAB QLR . . . D 3 18.605 -9.721 7.798 1 46.55 ? CAB QLR 229 A 1 HETATM 9 C CAC QLR . . . D 3 13.102 -11.986 5.115 1 45.79 ? CAC QLR 229 A 1 HETATM 10 C CAD QLR . . . D 3 15.844 -12.495 7.946 1 52.21 ? CAD QLR 229 A 1 HETATM 11 C CAE QLR . . . D 3 12.578 -6.586 5.29 1 27.9 ? CAE QLR 229 A 1 HETATM 12 N NAF QLR . . . D 3 9.3 -4.078 2.804 1 28.58 ? NAF QLR 229 A 1 HETATM 13 N NAG QLR . . . D 3 12.999 -5.683 0.434 1 24.9 ? NAG QLR 229 A 1 HETATM 14 C CAH QLR . . . D 3 14.032 -6.864 2.856 1 27.35 ? CAH QLR 229 A 1 HETATM 15 C CAI QLR . . . D 3 15.071 -7.499 2.981 1 29.77 ? CAI QLR 229 A 1 HETATM 16 C CAJ QLR . . . D 3 17.421 -9.529 5.032 1 45.78 ? CAJ QLR 229 A 1 HETATM 17 C CAK QLR . . . D 3 15.366 -10.376 4.088 1 44.74 ? CAK QLR 229 A 1 HETATM 18 C CAL QLR . . . D 3 17.006 -8.514 1.808 1 37.9 ? CAL QLR 229 A 1 HETATM 19 O OAO QLR . . . D 3 18.55 -10.747 6.79 1 46.7 ? OAO QLR 229 A 1 HETATM 20 O OAP QLR . . . D 3 14.455 -12.46 4.909 1 46.15 ? OAP QLR 229 A 1 HETATM 21 O OAQ QLR . . . D 3 16.54 -12.697 6.681 1 47.18 ? OAQ QLR 229 A 1 HETATM 22 C CAU QLR . . . D 3 16.355 -9.4 4.136 1 41.83 ? CAU QLR 229 A 1 HETATM 23 C CAW QLR . . . D 3 17.485 -10.618 5.915 1 46.25 ? CAW QLR 229 A 1 HETATM 24 C CAX QLR . . . D 3 15.415 -11.466 4.966 1 48.25 ? CAX QLR 229 A 1 HETATM 25 C CAY QLR . . . D 3 16.485 -11.596 5.865 1 45.55 ? CAY QLR 229 A 1 HETATM 26 C CAZ QLR . . . D 3 16.356 -8.201 3.166 1 34.42 ? CAZ QLR 229 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #