data_3QLY # _model_server_result.job_id BX-wqOaArDaZvqKDquWtBQ _model_server_result.datetime_utc '2024-11-24 14:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":228}' # _entry.id 3QLY # _exptl.entry_id 3QLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLY _cell.length_a 42.731 _cell.length_b 42.731 _cell.length_c 230.839 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 288 n n PA O2A NDP sing 289 n n PA O5B NDP sing 290 n n PA O3 NDP sing 291 n n O2A HOA2 NDP sing 292 n n O5B C5B NDP sing 293 n n C5B C4B NDP sing 294 n n C5B H51A NDP sing 295 n n C5B H52A NDP sing 296 n n C4B O4B NDP sing 297 n n C4B C3B NDP sing 298 n n C4B H4B NDP sing 299 n n O4B C1B NDP sing 300 n n C3B O3B NDP sing 301 n n C3B C2B NDP sing 302 n n C3B H3B NDP sing 303 n n O3B HO3A NDP sing 304 n n C2B O2B NDP sing 305 n n C2B C1B NDP sing 306 n n C2B H2B NDP sing 307 n n O2B P2B NDP sing 308 n n C1B N9A NDP sing 309 n n C1B H1B NDP sing 310 n n N9A C8A NDP sing 311 n y N9A C4A NDP sing 312 n y C8A N7A NDP doub 313 n y C8A H8A NDP sing 314 n n N7A C5A NDP sing 315 n y C5A C6A NDP sing 316 n y C5A C4A NDP doub 317 n y C6A N6A NDP sing 318 n n C6A N1A NDP doub 319 n y N6A H61A NDP sing 320 n n N6A H62A NDP sing 321 n n N1A C2A NDP sing 322 n y C2A N3A NDP doub 323 n y C2A H2A NDP sing 324 n n N3A C4A NDP sing 325 n y O3 PN NDP sing 326 n n PN O1N NDP doub 327 n n PN O2N NDP sing 328 n n PN O5D NDP sing 329 n n O2N H21N NDP sing 330 n n O5D C5D NDP sing 331 n n C5D C4D NDP sing 332 n n C5D H51N NDP sing 333 n n C5D H52N NDP sing 334 n n C4D O4D NDP sing 335 n n C4D C3D NDP sing 336 n n C4D H4D NDP sing 337 n n O4D C1D NDP sing 338 n n C3D O3D NDP sing 339 n n C3D C2D NDP sing 340 n n C3D H3D NDP sing 341 n n O3D HO3N NDP sing 342 n n C2D O2D NDP sing 343 n n C2D C1D NDP sing 344 n n C2D H2D NDP sing 345 n n O2D HO2N NDP sing 346 n n C1D N1N NDP sing 347 n n C1D H1D NDP sing 348 n n N1N C2N NDP sing 349 n n N1N C6N NDP sing 350 n n C2N C3N NDP doub 351 n n C2N H2N NDP sing 352 n n C3N C7N NDP sing 353 n n C3N C4N NDP sing 354 n n C7N O7N NDP doub 355 n n C7N N7N NDP sing 356 n n N7N H71N NDP sing 357 n n N7N H72N NDP sing 358 n n C4N C5N NDP sing 359 n n C4N H41N NDP sing 360 n n C4N H42N NDP sing 361 n n C5N C6N NDP doub 362 n n C5N H5N NDP sing 363 n n C6N H6N NDP sing 364 n n P2B O1X NDP doub 365 n n P2B O2X NDP sing 366 n n P2B O3X NDP sing 367 n n O2X HOP2 NDP sing 368 n n O3X HOP3 NDP sing 369 n n # _atom_sites.entry_id 3QLY _atom_sites.fract_transf_matrix[1][1] 0.023402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 207 NDP NDP . D 3 55V A 1 229 1 55V 55V . E 2 NDP B 1 228 207 NDP NDP . F 3 55V B 1 229 1 55V 55V . G 4 HOH A 1 230 16 HOH HOH . G 4 HOH A 2 231 25 HOH HOH . G 4 HOH A 3 232 31 HOH HOH . G 4 HOH A 4 233 35 HOH HOH . G 4 HOH A 5 234 39 HOH HOH . G 4 HOH A 6 235 41 HOH HOH . G 4 HOH A 7 236 46 HOH HOH . G 4 HOH A 8 237 50 HOH HOH . G 4 HOH A 9 238 53 HOH HOH . G 4 HOH A 10 239 57 HOH HOH . G 4 HOH A 11 240 1 HOH HOH . G 4 HOH A 12 241 2 HOH HOH . G 4 HOH A 13 242 3 HOH HOH . G 4 HOH A 14 243 1 HOH HOH . G 4 HOH A 15 244 4 HOH HOH . G 4 HOH A 16 245 6 HOH HOH . G 4 HOH A 17 246 3 HOH HOH . G 4 HOH A 18 247 4 HOH HOH . H 4 HOH B 1 230 2 HOH HOH . H 4 HOH B 2 231 3 HOH HOH . H 4 HOH B 3 232 4 HOH HOH . H 4 HOH B 4 233 6 HOH HOH . H 4 HOH B 5 234 13 HOH HOH . H 4 HOH B 6 235 23 HOH HOH . H 4 HOH B 7 236 26 HOH HOH . H 4 HOH B 8 237 27 HOH HOH . H 4 HOH B 9 238 29 HOH HOH . H 4 HOH B 10 239 34 HOH HOH . H 4 HOH B 11 240 37 HOH HOH . H 4 HOH B 12 241 38 HOH HOH . H 4 HOH B 13 242 44 HOH HOH . H 4 HOH B 14 243 47 HOH HOH . H 4 HOH B 15 244 52 HOH HOH . H 4 HOH B 16 245 58 HOH HOH . H 4 HOH B 17 246 59 HOH HOH . H 4 HOH B 18 247 1 HOH HOH . H 4 HOH B 19 248 2 HOH HOH . H 4 HOH B 20 249 3 HOH HOH . H 4 HOH B 21 250 5 HOH HOH . H 4 HOH B 22 251 2 HOH HOH . H 4 HOH B 23 252 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -1.899 25.545 -3.542 1 24.05 ? PA NDP 228 A 1 HETATM 2 O O1A NDP . . . C 2 -1.071 24.596 -4.312 1 23.85 ? O1A NDP 228 A 1 HETATM 3 O O2A NDP . . . C 2 -1.068 26.532 -2.815 1 23.15 ? O2A NDP 228 A 1 HETATM 4 O O5B NDP . . . C 2 -2.924 26.285 -4.523 1 25.2 ? O5B NDP 228 A 1 HETATM 5 C C5B NDP . . . C 2 -3.875 25.565 -5.273 1 24.28 ? C5B NDP 228 A 1 HETATM 6 C C4B NDP . . . C 2 -4.602 26.597 -6.115 1 25.22 ? C4B NDP 228 A 1 HETATM 7 O O4B NDP . . . C 2 -3.698 27.195 -7.029 1 24.98 ? O4B NDP 228 A 1 HETATM 8 C C3B NDP . . . C 2 -5.741 26.045 -6.952 1 25.81 ? C3B NDP 228 A 1 HETATM 9 O O3B NDP . . . C 2 -6.947 26.053 -6.219 1 27.57 ? O3B NDP 228 A 1 HETATM 10 C C2B NDP . . . C 2 -5.797 27.053 -8.077 1 24.63 ? C2B NDP 228 A 1 HETATM 11 O O2B NDP . . . C 2 -6.412 28.213 -7.567 1 24.93 ? O2B NDP 228 A 1 HETATM 12 C C1B NDP . . . C 2 -4.341 27.441 -8.27 1 24.7 ? C1B NDP 228 A 1 HETATM 13 N N9A NDP . . . C 2 -3.713 26.612 -9.311 1 24.71 ? N9A NDP 228 A 1 HETATM 14 C C8A NDP . . . C 2 -3.342 25.297 -9.187 1 24.85 ? C8A NDP 228 A 1 HETATM 15 N N7A NDP . . . C 2 -2.776 24.9 -10.347 1 24.17 ? N7A NDP 228 A 1 HETATM 16 C C5A NDP . . . C 2 -2.758 25.949 -11.2 1 23.93 ? C5A NDP 228 A 1 HETATM 17 C C6A NDP . . . C 2 -2.285 26.09 -12.499 1 23.77 ? C6A NDP 228 A 1 HETATM 18 N N6A NDP . . . C 2 -1.728 25.058 -13.128 1 24.12 ? N6A NDP 228 A 1 HETATM 19 N N1A NDP . . . C 2 -2.401 27.306 -13.135 1 24.65 ? N1A NDP 228 A 1 HETATM 20 C C2A NDP . . . C 2 -2.988 28.372 -12.484 1 25.11 ? C2A NDP 228 A 1 HETATM 21 N N3A NDP . . . C 2 -3.449 28.224 -11.191 1 26.19 ? N3A NDP 228 A 1 HETATM 22 C C4A NDP . . . C 2 -3.338 27.031 -10.559 1 24.19 ? C4A NDP 228 A 1 HETATM 23 O O3 NDP . . . C 2 -2.873 24.74 -2.547 1 25.18 ? O3 NDP 228 A 1 HETATM 24 P PN NDP . . . C 2 -2.636 23.412 -1.674 1 24.7 ? PN NDP 228 A 1 HETATM 25 O O1N NDP . . . C 2 -3.773 23.277 -0.737 1 25.64 ? O1N NDP 228 A 1 HETATM 26 O O2N NDP . . . C 2 -2.293 22.296 -2.586 1 24.76 ? O2N NDP 228 A 1 HETATM 27 O O5D NDP . . . C 2 -1.329 23.799 -0.822 1 24.49 ? O5D NDP 228 A 1 HETATM 28 C C5D NDP . . . C 2 -1.449 24.61 0.326 1 23.97 ? C5D NDP 228 A 1 HETATM 29 C C4D NDP . . . C 2 -0.822 23.898 1.518 1 21.74 ? C4D NDP 228 A 1 HETATM 30 O O4D NDP . . . C 2 0.561 23.69 1.27 1 21.36 ? O4D NDP 228 A 1 HETATM 31 C C3D NDP . . . C 2 -0.931 24.738 2.78 1 20.97 ? C3D NDP 228 A 1 HETATM 32 O O3D NDP . . . C 2 -1.307 23.886 3.839 1 21.74 ? O3D NDP 228 A 1 HETATM 33 C C2D NDP . . . C 2 0.479 25.231 3.03 1 21.84 ? C2D NDP 228 A 1 HETATM 34 O O2D NDP . . . C 2 0.758 25.284 4.412 1 21.56 ? O2D NDP 228 A 1 HETATM 35 C C1D NDP . . . C 2 1.328 24.171 2.355 1 20.63 ? C1D NDP 228 A 1 HETATM 36 N N1N NDP . . . C 2 2.629 24.704 1.915 1 19.66 ? N1N NDP 228 A 1 HETATM 37 C C2N NDP . . . C 2 3.763 24.18 2.461 1 19.61 ? C2N NDP 228 A 1 HETATM 38 C C3N NDP . . . C 2 5.01 24.646 2.08 1 20.87 ? C3N NDP 228 A 1 HETATM 39 C C7N NDP . . . C 2 6.241 24.026 2.671 1 21.47 ? C7N NDP 228 A 1 HETATM 40 O O7N NDP . . . C 2 7.503 24.364 2.156 1 22.01 ? O7N NDP 228 A 1 HETATM 41 N N7N NDP . . . C 2 6.108 23.182 3.691 1 23.12 ? N7N NDP 228 A 1 HETATM 42 C C4N NDP . . . C 2 5.106 25.662 1.134 1 21.19 ? C4N NDP 228 A 1 HETATM 43 C C5N NDP . . . C 2 3.944 26.178 0.566 1 19.84 ? C5N NDP 228 A 1 HETATM 44 C C6N NDP . . . C 2 2.704 25.685 0.962 1 20.07 ? C6N NDP 228 A 1 HETATM 45 P P2B NDP . . . C 2 -7.932 28.612 -7.894 1 25.36 ? P2B NDP 228 A 1 HETATM 46 O O1X NDP . . . C 2 -8.834 27.746 -7.041 1 24.02 ? O1X NDP 228 A 1 HETATM 47 O O2X NDP . . . C 2 -8.141 30.069 -7.55 1 23.62 ? O2X NDP 228 A 1 HETATM 48 O O3X NDP . . . C 2 -8.214 28.394 -9.359 1 22.5 ? O3X NDP 228 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #