data_3QLY
#
_model_server_result.job_id            7kllZ5Pwhs-V53GpLyFo7Q 
_model_server_result.datetime_utc      '2024-11-05 12:42:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qly 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":228}' 
#
_entry.id    3QLY 
#
_exptl.entry_id    3QLY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QLY 
_cell.length_a            42.731 
_cell.length_b            42.731 
_cell.length_c            230.839 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QLY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 288 n n 
PA O2A NDP sing 289 n n 
PA O5B NDP sing 290 n n 
PA O3 NDP sing 291 n n 
O2A HOA2 NDP sing 292 n n 
O5B C5B NDP sing 293 n n 
C5B C4B NDP sing 294 n n 
C5B H51A NDP sing 295 n n 
C5B H52A NDP sing 296 n n 
C4B O4B NDP sing 297 n n 
C4B C3B NDP sing 298 n n 
C4B H4B NDP sing 299 n n 
O4B C1B NDP sing 300 n n 
C3B O3B NDP sing 301 n n 
C3B C2B NDP sing 302 n n 
C3B H3B NDP sing 303 n n 
O3B HO3A NDP sing 304 n n 
C2B O2B NDP sing 305 n n 
C2B C1B NDP sing 306 n n 
C2B H2B NDP sing 307 n n 
O2B P2B NDP sing 308 n n 
C1B N9A NDP sing 309 n n 
C1B H1B NDP sing 310 n n 
N9A C8A NDP sing 311 n y 
N9A C4A NDP sing 312 n y 
C8A N7A NDP doub 313 n y 
C8A H8A NDP sing 314 n n 
N7A C5A NDP sing 315 n y 
C5A C6A NDP sing 316 n y 
C5A C4A NDP doub 317 n y 
C6A N6A NDP sing 318 n n 
C6A N1A NDP doub 319 n y 
N6A H61A NDP sing 320 n n 
N6A H62A NDP sing 321 n n 
N1A C2A NDP sing 322 n y 
C2A N3A NDP doub 323 n y 
C2A H2A NDP sing 324 n n 
N3A C4A NDP sing 325 n y 
O3 PN NDP sing 326 n n 
PN O1N NDP doub 327 n n 
PN O2N NDP sing 328 n n 
PN O5D NDP sing 329 n n 
O2N H21N NDP sing 330 n n 
O5D C5D NDP sing 331 n n 
C5D C4D NDP sing 332 n n 
C5D H51N NDP sing 333 n n 
C5D H52N NDP sing 334 n n 
C4D O4D NDP sing 335 n n 
C4D C3D NDP sing 336 n n 
C4D H4D NDP sing 337 n n 
O4D C1D NDP sing 338 n n 
C3D O3D NDP sing 339 n n 
C3D C2D NDP sing 340 n n 
C3D H3D NDP sing 341 n n 
O3D HO3N NDP sing 342 n n 
C2D O2D NDP sing 343 n n 
C2D C1D NDP sing 344 n n 
C2D H2D NDP sing 345 n n 
O2D HO2N NDP sing 346 n n 
C1D N1N NDP sing 347 n n 
C1D H1D NDP sing 348 n n 
N1N C2N NDP sing 349 n n 
N1N C6N NDP sing 350 n n 
C2N C3N NDP doub 351 n n 
C2N H2N NDP sing 352 n n 
C3N C7N NDP sing 353 n n 
C3N C4N NDP sing 354 n n 
C7N O7N NDP doub 355 n n 
C7N N7N NDP sing 356 n n 
N7N H71N NDP sing 357 n n 
N7N H72N NDP sing 358 n n 
C4N C5N NDP sing 359 n n 
C4N H41N NDP sing 360 n n 
C4N H42N NDP sing 361 n n 
C5N C6N NDP doub 362 n n 
C5N H5N NDP sing 363 n n 
C6N H6N NDP sing 364 n n 
P2B O1X NDP doub 365 n n 
P2B O2X NDP sing 366 n n 
P2B O3X NDP sing 367 n n 
O2X HOP2 NDP sing 368 n n 
O3X HOP3 NDP sing 369 n n 
#
_atom_sites.entry_id                     3QLY 
_atom_sites.fract_transf_matrix[1][1]    0.023402 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 228 207 NDP NDP . 
D 3 55V A 1 229 1 55V 55V . 
E 2 NDP B 1 228 207 NDP NDP . 
F 3 55V B 1 229 1 55V 55V . 
G 4 HOH A 1 230 16 HOH HOH . 
G 4 HOH A 2 231 25 HOH HOH . 
G 4 HOH A 3 232 31 HOH HOH . 
G 4 HOH A 4 233 35 HOH HOH . 
G 4 HOH A 5 234 39 HOH HOH . 
G 4 HOH A 6 235 41 HOH HOH . 
G 4 HOH A 7 236 46 HOH HOH . 
G 4 HOH A 8 237 50 HOH HOH . 
G 4 HOH A 9 238 53 HOH HOH . 
G 4 HOH A 10 239 57 HOH HOH . 
G 4 HOH A 11 240 1 HOH HOH . 
G 4 HOH A 12 241 2 HOH HOH . 
G 4 HOH A 13 242 3 HOH HOH . 
G 4 HOH A 14 243 1 HOH HOH . 
G 4 HOH A 15 244 4 HOH HOH . 
G 4 HOH A 16 245 6 HOH HOH . 
G 4 HOH A 17 246 3 HOH HOH . 
G 4 HOH A 18 247 4 HOH HOH . 
H 4 HOH B 1 230 2 HOH HOH . 
H 4 HOH B 2 231 3 HOH HOH . 
H 4 HOH B 3 232 4 HOH HOH . 
H 4 HOH B 4 233 6 HOH HOH . 
H 4 HOH B 5 234 13 HOH HOH . 
H 4 HOH B 6 235 23 HOH HOH . 
H 4 HOH B 7 236 26 HOH HOH . 
H 4 HOH B 8 237 27 HOH HOH . 
H 4 HOH B 9 238 29 HOH HOH . 
H 4 HOH B 10 239 34 HOH HOH . 
H 4 HOH B 11 240 37 HOH HOH . 
H 4 HOH B 12 241 38 HOH HOH . 
H 4 HOH B 13 242 44 HOH HOH . 
H 4 HOH B 14 243 47 HOH HOH . 
H 4 HOH B 15 244 52 HOH HOH . 
H 4 HOH B 16 245 58 HOH HOH . 
H 4 HOH B 17 246 59 HOH HOH . 
H 4 HOH B 18 247 1 HOH HOH . 
H 4 HOH B 19 248 2 HOH HOH . 
H 4 HOH B 20 249 3 HOH HOH . 
H 4 HOH B 21 250 5 HOH HOH . 
H 4 HOH B 22 251 2 HOH HOH . 
H 4 HOH B 23 252 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 -1.899 25.545 -3.542 1 24.05 ? PA NDP 228 A 1 
HETATM 2 O O1A NDP . . . C 2 -1.071 24.596 -4.312 1 23.85 ? O1A NDP 228 A 1 
HETATM 3 O O2A NDP . . . C 2 -1.068 26.532 -2.815 1 23.15 ? O2A NDP 228 A 1 
HETATM 4 O O5B NDP . . . C 2 -2.924 26.285 -4.523 1 25.2 ? O5B NDP 228 A 1 
HETATM 5 C C5B NDP . . . C 2 -3.875 25.565 -5.273 1 24.28 ? C5B NDP 228 A 1 
HETATM 6 C C4B NDP . . . C 2 -4.602 26.597 -6.115 1 25.22 ? C4B NDP 228 A 1 
HETATM 7 O O4B NDP . . . C 2 -3.698 27.195 -7.029 1 24.98 ? O4B NDP 228 A 1 
HETATM 8 C C3B NDP . . . C 2 -5.741 26.045 -6.952 1 25.81 ? C3B NDP 228 A 1 
HETATM 9 O O3B NDP . . . C 2 -6.947 26.053 -6.219 1 27.57 ? O3B NDP 228 A 1 
HETATM 10 C C2B NDP . . . C 2 -5.797 27.053 -8.077 1 24.63 ? C2B NDP 228 A 1 
HETATM 11 O O2B NDP . . . C 2 -6.412 28.213 -7.567 1 24.93 ? O2B NDP 228 A 1 
HETATM 12 C C1B NDP . . . C 2 -4.341 27.441 -8.27 1 24.7 ? C1B NDP 228 A 1 
HETATM 13 N N9A NDP . . . C 2 -3.713 26.612 -9.311 1 24.71 ? N9A NDP 228 A 1 
HETATM 14 C C8A NDP . . . C 2 -3.342 25.297 -9.187 1 24.85 ? C8A NDP 228 A 1 
HETATM 15 N N7A NDP . . . C 2 -2.776 24.9 -10.347 1 24.17 ? N7A NDP 228 A 1 
HETATM 16 C C5A NDP . . . C 2 -2.758 25.949 -11.2 1 23.93 ? C5A NDP 228 A 1 
HETATM 17 C C6A NDP . . . C 2 -2.285 26.09 -12.499 1 23.77 ? C6A NDP 228 A 1 
HETATM 18 N N6A NDP . . . C 2 -1.728 25.058 -13.128 1 24.12 ? N6A NDP 228 A 1 
HETATM 19 N N1A NDP . . . C 2 -2.401 27.306 -13.135 1 24.65 ? N1A NDP 228 A 1 
HETATM 20 C C2A NDP . . . C 2 -2.988 28.372 -12.484 1 25.11 ? C2A NDP 228 A 1 
HETATM 21 N N3A NDP . . . C 2 -3.449 28.224 -11.191 1 26.19 ? N3A NDP 228 A 1 
HETATM 22 C C4A NDP . . . C 2 -3.338 27.031 -10.559 1 24.19 ? C4A NDP 228 A 1 
HETATM 23 O O3 NDP . . . C 2 -2.873 24.74 -2.547 1 25.18 ? O3 NDP 228 A 1 
HETATM 24 P PN NDP . . . C 2 -2.636 23.412 -1.674 1 24.7 ? PN NDP 228 A 1 
HETATM 25 O O1N NDP . . . C 2 -3.773 23.277 -0.737 1 25.64 ? O1N NDP 228 A 1 
HETATM 26 O O2N NDP . . . C 2 -2.293 22.296 -2.586 1 24.76 ? O2N NDP 228 A 1 
HETATM 27 O O5D NDP . . . C 2 -1.329 23.799 -0.822 1 24.49 ? O5D NDP 228 A 1 
HETATM 28 C C5D NDP . . . C 2 -1.449 24.61 0.326 1 23.97 ? C5D NDP 228 A 1 
HETATM 29 C C4D NDP . . . C 2 -0.822 23.898 1.518 1 21.74 ? C4D NDP 228 A 1 
HETATM 30 O O4D NDP . . . C 2 0.561 23.69 1.27 1 21.36 ? O4D NDP 228 A 1 
HETATM 31 C C3D NDP . . . C 2 -0.931 24.738 2.78 1 20.97 ? C3D NDP 228 A 1 
HETATM 32 O O3D NDP . . . C 2 -1.307 23.886 3.839 1 21.74 ? O3D NDP 228 A 1 
HETATM 33 C C2D NDP . . . C 2 0.479 25.231 3.03 1 21.84 ? C2D NDP 228 A 1 
HETATM 34 O O2D NDP . . . C 2 0.758 25.284 4.412 1 21.56 ? O2D NDP 228 A 1 
HETATM 35 C C1D NDP . . . C 2 1.328 24.171 2.355 1 20.63 ? C1D NDP 228 A 1 
HETATM 36 N N1N NDP . . . C 2 2.629 24.704 1.915 1 19.66 ? N1N NDP 228 A 1 
HETATM 37 C C2N NDP . . . C 2 3.763 24.18 2.461 1 19.61 ? C2N NDP 228 A 1 
HETATM 38 C C3N NDP . . . C 2 5.01 24.646 2.08 1 20.87 ? C3N NDP 228 A 1 
HETATM 39 C C7N NDP . . . C 2 6.241 24.026 2.671 1 21.47 ? C7N NDP 228 A 1 
HETATM 40 O O7N NDP . . . C 2 7.503 24.364 2.156 1 22.01 ? O7N NDP 228 A 1 
HETATM 41 N N7N NDP . . . C 2 6.108 23.182 3.691 1 23.12 ? N7N NDP 228 A 1 
HETATM 42 C C4N NDP . . . C 2 5.106 25.662 1.134 1 21.19 ? C4N NDP 228 A 1 
HETATM 43 C C5N NDP . . . C 2 3.944 26.178 0.566 1 19.84 ? C5N NDP 228 A 1 
HETATM 44 C C6N NDP . . . C 2 2.704 25.685 0.962 1 20.07 ? C6N NDP 228 A 1 
HETATM 45 P P2B NDP . . . C 2 -7.932 28.612 -7.894 1 25.36 ? P2B NDP 228 A 1 
HETATM 46 O O1X NDP . . . C 2 -8.834 27.746 -7.041 1 24.02 ? O1X NDP 228 A 1 
HETATM 47 O O2X NDP . . . C 2 -8.141 30.069 -7.55 1 23.62 ? O2X NDP 228 A 1 
HETATM 48 O O3X NDP . . . C 2 -8.214 28.394 -9.359 1 22.5 ? O3X NDP 228 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#