data_3QLY # _model_server_result.job_id s3XRYqjO1KDD8mjD90FQrQ _model_server_result.datetime_utc '2024-11-05 12:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":229}' # _entry.id 3QLY # _exptl.entry_id 3QLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QLY _cell.length_a 42.731 _cell.length_b 42.731 _cell.length_c 230.839 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H24 N4 O3' _chem_comp.formula_weight 356.419 _chem_comp.id 55V _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1P O1O 55V sing 1 n n C1P H1P 55V sing 2 n n C1P H1PA 55V sing 3 n n C1P H1PB 55V sing 4 n n O1O C1N 55V sing 5 n n C1M C1N 55V doub 6 n y C1N C1Q 55V sing 7 n y C1M C1L 55V sing 8 n y C1M H1M 55V sing 9 n n C1Q O1V 55V sing 10 n n C1Q C1R 55V doub 11 n y O1V C1W 55V sing 12 n n C1W H1W 55V sing 13 n n C1W H1WA 55V sing 14 n n C1W H1WB 55V sing 15 n n C1S C1R 55V sing 16 n y C1R O1T 55V sing 17 n n O1T C1U 55V sing 18 n n C1U H1U 55V sing 19 n n C1U H1UA 55V sing 20 n n C1U H1UB 55V sing 21 n n C1L C1S 55V doub 22 n y C1S H1S 55V sing 23 n n C1J C1L 55V sing 24 n n C1K C1J 55V sing 25 n n C1J C1I 55V sing 26 n n C1J C1X 55V sing 27 n n C1K H1K 55V sing 28 n n C1K H1KA 55V sing 29 n n C1K H1KB 55V sing 30 n n C1X H1X 55V sing 31 n n C1X H1XA 55V sing 32 n n C1X H1XB 55V sing 33 n n C1I C1H 55V trip 34 n n C1H C5 55V sing 35 n n C4 C5 55V doub 36 n y C5 C6 55V sing 37 n y C1Y C4 55V sing 38 n n C4 N3 55V sing 39 n y C1Y H1Y 55V sing 40 n n C1Y H1YA 55V sing 41 n n C1Y H1YB 55V sing 42 n n N3 C2 55V doub 43 n y C2 N1Z 55V sing 44 n n C2 N1 55V sing 45 n y N1Z HN1Z 55V sing 46 n n N1Z HN1A 55V sing 47 n n C6 N1 55V doub 48 n y C6 N1G 55V sing 49 n n N1G HN1G 55V sing 50 n n N1G HN1B 55V sing 51 n n # _atom_sites.entry_id 3QLY _atom_sites.fract_transf_matrix[1][1] 0.023402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 207 NDP NDP . D 3 55V A 1 229 1 55V 55V . E 2 NDP B 1 228 207 NDP NDP . F 3 55V B 1 229 1 55V 55V . G 4 HOH A 1 230 16 HOH HOH . G 4 HOH A 2 231 25 HOH HOH . G 4 HOH A 3 232 31 HOH HOH . G 4 HOH A 4 233 35 HOH HOH . G 4 HOH A 5 234 39 HOH HOH . G 4 HOH A 6 235 41 HOH HOH . G 4 HOH A 7 236 46 HOH HOH . G 4 HOH A 8 237 50 HOH HOH . G 4 HOH A 9 238 53 HOH HOH . G 4 HOH A 10 239 57 HOH HOH . G 4 HOH A 11 240 1 HOH HOH . G 4 HOH A 12 241 2 HOH HOH . G 4 HOH A 13 242 3 HOH HOH . G 4 HOH A 14 243 1 HOH HOH . G 4 HOH A 15 244 4 HOH HOH . G 4 HOH A 16 245 6 HOH HOH . G 4 HOH A 17 246 3 HOH HOH . G 4 HOH A 18 247 4 HOH HOH . H 4 HOH B 1 230 2 HOH HOH . H 4 HOH B 2 231 3 HOH HOH . H 4 HOH B 3 232 4 HOH HOH . H 4 HOH B 4 233 6 HOH HOH . H 4 HOH B 5 234 13 HOH HOH . H 4 HOH B 6 235 23 HOH HOH . H 4 HOH B 7 236 26 HOH HOH . H 4 HOH B 8 237 27 HOH HOH . H 4 HOH B 9 238 29 HOH HOH . H 4 HOH B 10 239 34 HOH HOH . H 4 HOH B 11 240 37 HOH HOH . H 4 HOH B 12 241 38 HOH HOH . H 4 HOH B 13 242 44 HOH HOH . H 4 HOH B 14 243 47 HOH HOH . H 4 HOH B 15 244 52 HOH HOH . H 4 HOH B 16 245 58 HOH HOH . H 4 HOH B 17 246 59 HOH HOH . H 4 HOH B 18 247 1 HOH HOH . H 4 HOH B 19 248 2 HOH HOH . H 4 HOH B 20 249 3 HOH HOH . H 4 HOH B 21 250 5 HOH HOH . H 4 HOH B 22 251 2 HOH HOH . H 4 HOH B 23 252 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1P 55V . . . D 3 8.239 33.554 4.747 1 32.11 ? C1P 55V 229 A 1 HETATM 2 O O1O 55V . . . D 3 6.916 34.107 4.798 1 30.26 ? O1O 55V 229 A 1 HETATM 3 C C1N 55V . . . D 3 5.988 33.111 4.892 1 30.35 ? C1N 55V 229 A 1 HETATM 4 C C1M 55V . . . D 3 5.96 32.1 3.934 1 29.84 ? C1M 55V 229 A 1 HETATM 5 C C1Q 55V . . . D 3 5.063 33.107 5.938 1 30.27 ? C1Q 55V 229 A 1 HETATM 6 O O1V 55V . . . D 3 5.061 34.107 6.875 1 30.06 ? O1V 55V 229 A 1 HETATM 7 C C1W 55V . . . D 3 6.294 34.149 7.607 1 29.32 ? C1W 55V 229 A 1 HETATM 8 C C1R 55V . . . D 3 4.104 32.099 6.01 1 30.1 ? C1R 55V 229 A 1 HETATM 9 O O1T 55V . . . D 3 3.193 32.112 7.032 1 29.02 ? O1T 55V 229 A 1 HETATM 10 C C1U 55V . . . D 3 2.443 30.898 7.086 1 27.88 ? C1U 55V 229 A 1 HETATM 11 C C1S 55V . . . D 3 4.071 31.096 5.036 1 30.12 ? C1S 55V 229 A 1 HETATM 12 C C1L 55V . . . D 3 5.012 31.082 4.006 1 29.45 ? C1L 55V 229 A 1 HETATM 13 C C1J 55V . . . D 3 4.975 29.993 2.911 1 28.24 ? C1J 55V 229 A 1 HETATM 14 C C1K 55V . . . D 3 4.87 30.673 1.543 1 27.73 ? C1K 55V 229 A 1 HETATM 15 C C1X 55V . . . D 3 3.786 29.056 3.124 1 27.27 ? C1X 55V 229 A 1 HETATM 16 C C1I 55V . . . D 3 6.214 29.209 2.939 1 27.9 ? C1I 55V 229 A 1 HETATM 17 C C1H 55V . . . D 3 7.228 28.524 2.917 1 28.24 ? C1H 55V 229 A 1 HETATM 18 C C5 55V . . . D 3 8.425 27.738 2.86 1 28.58 ? C5 55V 229 A 1 HETATM 19 C C4 55V . . . D 3 9.169 27.518 4.01 1 28.63 ? C4 55V 229 A 1 HETATM 20 C C1Y 55V . . . D 3 8.727 28.122 5.343 1 27.63 ? C1Y 55V 229 A 1 HETATM 21 N N3 55V . . . D 3 10.284 26.778 3.941 1 28.35 ? N3 55V 229 A 1 HETATM 22 C C2 55V . . . D 3 10.687 26.248 2.775 1 27.81 ? C2 55V 229 A 1 HETATM 23 N N1Z 55V . . . D 3 11.801 25.523 2.74 1 27.96 ? N1Z 55V 229 A 1 HETATM 24 N N1 55V . . . D 3 9.982 26.446 1.647 1 27.26 ? N1 55V 229 A 1 HETATM 25 C C6 55V . . . D 3 8.857 27.175 1.663 1 27.74 ? C6 55V 229 A 1 HETATM 26 N N1G 55V . . . D 3 8.166 27.355 0.539 1 27.95 ? N1G 55V 229 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #