data_3QM4 # _model_server_result.job_id B_62j6P8p8NIyZWgFKbCFw _model_server_result.datetime_utc '2024-11-24 19:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 3QM4 # _exptl.entry_id 3QM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.506 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Prinomastat _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 134.97 _cell.angle_gamma 90 _cell.entry_id 3QM4 _cell.length_a 194.54 _cell.length_b 55.07 _cell.length_c 145.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 421 A CYS 443 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 C FE HEM . A HEM 502 1_555 D N2 PN0 . A PN0 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 B NE2 HIS 236 B HIS 258 1_555 G NI NI . B NI 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 B OD1 ASP 248 B ASP 270 1_555 G NI NI . B NI 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 B OE1 GLU 251 B GLU 273 1_555 G NI NI . B NI 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc6 B SG CYS 421 B CYS 443 1_555 E FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 E FE HEM . B HEM 502 1_555 F N2 PN0 . B PN0 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'C18 H21 N3 O5 S2' _chem_comp.formula_weight 423.506 _chem_comp.id PN0 _chem_comp.mon_nstd_flag . _chem_comp.name Prinomastat _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S)-N-hydroxy-2,2-dimethyl-4-{[4-(pyridin-4-yloxy)phenyl]sulfonyl}thiomorpholine-3-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PN0 sing 342 n n N1 C3 PN0 sing 343 n n N1 S2 PN0 sing 344 n n N3 C16 PN0 sing 345 n n N3 O4 PN0 sing 346 n n C4 C3 PN0 sing 347 n n C4 S1 PN0 sing 348 n n C5 C6 PN0 doub 349 n y C5 C10 PN0 sing 350 n y C5 S2 PN0 sing 351 n n C6 C7 PN0 sing 352 n y C7 C8 PN0 doub 353 n y C8 C9 PN0 sing 354 n y C8 O1 PN0 sing 355 n n C10 C9 PN0 doub 356 n y C13 C12 PN0 doub 357 n y C13 N2 PN0 sing 358 n y C15 C11 PN0 doub 359 n y C15 C14 PN0 sing 360 n y C17 C1 PN0 sing 361 n n C1 C2 PN0 sing 362 n n C1 S1 PN0 sing 363 n n C1 C18 PN0 sing 364 n n C2 C16 PN0 sing 365 n n S2 O2 PN0 doub 366 n n S2 O3 PN0 doub 367 n n O1 C11 PN0 sing 368 n n C11 C12 PN0 sing 369 n y N2 C14 PN0 doub 370 n y C16 O5 PN0 doub 371 n n N3 HN3 PN0 sing 372 n n C4 H4 PN0 sing 373 n n C4 H4A PN0 sing 374 n n C6 H6 PN0 sing 375 n n C7 H7 PN0 sing 376 n n C10 H10 PN0 sing 377 n n C13 H13 PN0 sing 378 n n C15 H15 PN0 sing 379 n n C17 H17 PN0 sing 380 n n C17 H17A PN0 sing 381 n n C17 H17B PN0 sing 382 n n C2 H2 PN0 sing 383 n n C3 H3 PN0 sing 384 n n C3 H3A PN0 sing 385 n n C9 H9 PN0 sing 386 n n C12 H12 PN0 sing 387 n n C14 H14 PN0 sing 388 n n O4 HO4 PN0 sing 389 n n C18 H18 PN0 sing 390 n n C18 H18A PN0 sing 391 n n C18 H18B PN0 sing 392 n n # _atom_sites.entry_id 3QM4 _atom_sites.fract_transf_matrix[1][1] 0.00514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 502 500 HEM HEM . D 3 PN0 A 1 503 501 PN0 PN0 . E 2 HEM B 1 502 500 HEM HEM . F 3 PN0 B 1 503 501 PN0 PN0 . G 4 NI B 1 600 600 NI NI . H 5 HOH A 1 701 701 HOH HOH . H 5 HOH A 2 702 702 HOH HOH . H 5 HOH A 3 703 703 HOH HOH . I 5 HOH B 1 704 704 HOH HOH . I 5 HOH B 2 705 705 HOH HOH . I 5 HOH B 3 706 706 HOH HOH . I 5 HOH B 4 707 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PN0 . . . F 3 29.207 -7.177 7.479 1 75.8 ? N1 PN0 503 B 1 HETATM 2 N N3 PN0 . . . F 3 31.697 -9.096 8.934 1 82.82 ? N3 PN0 503 B 1 HETATM 3 C C4 PN0 . . . F 3 28.434 -7.69 5.116 1 78.78 ? C4 PN0 503 B 1 HETATM 4 C C5 PN0 . . . F 3 29.008 -7.323 10.195 1 68.01 ? C5 PN0 503 B 1 HETATM 5 C C6 PN0 . . . F 3 28.19 -8.488 10.215 1 66.8 ? C6 PN0 503 B 1 HETATM 6 C C7 PN0 . . . F 3 28.259 -9.377 11.294 1 63.07 ? C7 PN0 503 B 1 HETATM 7 C C8 PN0 . . . F 3 29.139 -9.116 12.367 1 59.72 ? C8 PN0 503 B 1 HETATM 8 C C10 PN0 . . . F 3 29.902 -7.042 11.263 1 64.34 ? C10 PN0 503 B 1 HETATM 9 C C13 PN0 . . . F 3 30.995 -11.067 16.31 1 46.78 ? C13 PN0 503 B 1 HETATM 10 C C15 PN0 . . . F 3 31.683 -10.49 13.67 1 48.71 ? C15 PN0 503 B 1 HETATM 11 C C17 PN0 . . . F 3 32.522 -8.049 5.664 1 81.27 ? C17 PN0 503 B 1 HETATM 12 C C1 PN0 . . . F 3 31.058 -7.55 5.794 1 80.47 ? C1 PN0 503 B 1 HETATM 13 C C2 PN0 . . . F 3 30.617 -7.615 7.287 1 79.63 ? C2 PN0 503 B 1 HETATM 14 C C3 PN0 . . . F 3 28.091 -7.623 6.593 1 77.68 ? C3 PN0 503 B 1 HETATM 15 S S1 PN0 . . . F 3 29.978 -8.533 4.745 1 83.12 ? S1 PN0 503 B 1 HETATM 16 S S2 PN0 . . . F 3 28.865 -6.296 8.82 1 72.36 ? S2 PN0 503 B 1 HETATM 17 C C9 PN0 . . . F 3 29.961 -7.937 12.347 1 60.73 ? C9 PN0 503 B 1 HETATM 18 O O1 PN0 . . . F 3 29.205 -9.969 13.427 1 55.23 ? O1 PN0 503 B 1 HETATM 19 C C11 PN0 . . . F 3 30.309 -10.357 14.132 1 49.6 ? C11 PN0 503 B 1 HETATM 20 C C12 PN0 . . . F 3 29.978 -10.65 15.462 1 46.25 ? C12 PN0 503 B 1 HETATM 21 N N2 PN0 . . . F 3 32.291 -11.198 15.885 1 46.55 ? N2 PN0 503 B 1 HETATM 22 C C14 PN0 . . . F 3 32.642 -10.92 14.609 1 46.08 ? C14 PN0 503 B 1 HETATM 23 O O2 PN0 . . . F 3 27.46 -5.939 8.771 1 72.05 ? O2 PN0 503 B 1 HETATM 24 O O3 PN0 . . . F 3 29.78 -5.176 8.927 1 72.92 ? O3 PN0 503 B 1 HETATM 25 C C16 PN0 . . . F 3 30.8 -9.022 7.93 1 81.42 ? C16 PN0 503 B 1 HETATM 26 O O4 PN0 . . . F 3 31.978 -10.293 9.635 1 83.3 ? O4 PN0 503 B 1 HETATM 27 O O5 PN0 . . . F 3 30.142 -10.004 7.543 1 83.19 ? O5 PN0 503 B 1 HETATM 28 C C18 PN0 . . . F 3 31.095 -6.066 5.361 1 81.01 ? C18 PN0 503 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 28 #