data_3QMO # _model_server_result.job_id LDkKKCtW8WVTbno0rH6sQg _model_server_result.datetime_utc '2024-12-26 15:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":701}' # _entry.id 3QMO # _exptl.entry_id 3QMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QMO _cell.length_a 120.428 _cell.length_b 131.213 _cell.length_c 179.568 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG E 661 NAG 2 n C NDG 2 C 2 NDG E 662 NDG 3 n D NAG 1 D 1 NAG E 671 NAG 3 n D NAG 2 D 2 NAG E 672 NAG 2 n E NAG 1 E 1 NAG F 661 NAG 2 n E NDG 2 E 2 NDG F 662 NDG 4 n F NAG 1 F 1 NAG F 671 NAG 4 n F NAG 2 F 2 NAG F 672 NAG 4 n F BMA 3 F 3 BMA F 673 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 36 1_555 A SG CYS 38 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 28 A CYS 37 1_555 A SG CYS 151 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 32 A CYS 41 1_555 A SG CYS 48 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 50 A CYS 59 1_555 A SG CYS 60 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 561 A CYS 569 1_555 A SG CYS 567 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 B SG CYS 27 B CYS 36 1_555 B SG CYS 38 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf7 B SG CYS 28 B CYS 37 1_555 B SG CYS 151 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 32 B CYS 41 1_555 B SG CYS 48 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf9 B SG CYS 50 B CYS 59 1_555 B SG CYS 60 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 B SG CYS 561 B CYS 569 1_555 B SG CYS 567 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A ND2 ASN 59 A ASN 68 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 136 A ASN 144 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale3 A ND2 ASN 402 A ASN 410 1_555 L C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale4 B ND2 ASN 59 B ASN 68 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B ND2 ASN 136 B ASN 144 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale6 B ND2 ASN 402 B ASN 410 1_555 T C1 NAG . B NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NDG . E NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A NE2 HIS 380 A HIS 388 1_555 K FE HEM . A HEM 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 B NE2 HIS 380 B HIS 388 1_555 S FE HEM . B HEM 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 385 n n C1 O1 MAN sing 386 n n C1 O5 MAN sing 387 n n C1 H1 MAN sing 388 n n C2 C3 MAN sing 389 n n C2 O2 MAN sing 390 n n C2 H2 MAN sing 391 n n C3 C4 MAN sing 392 n n C3 O3 MAN sing 393 n n C3 H3 MAN sing 394 n n C4 C5 MAN sing 395 n n C4 O4 MAN sing 396 n n C4 H4 MAN sing 397 n n C5 C6 MAN sing 398 n n C5 O5 MAN sing 399 n n C5 H5 MAN sing 400 n n C6 O6 MAN sing 401 n n C6 H61 MAN sing 402 n n C6 H62 MAN sing 403 n n O1 HO1 MAN sing 404 n n O2 HO2 MAN sing 405 n n O3 HO3 MAN sing 406 n n O4 HO4 MAN sing 407 n n O6 HO6 MAN sing 408 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3QMO _atom_sites.fract_transf_matrix[1][1] 0.008304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GOL A 1 701 1 GOL GOL . H 5 GOL A 1 702 6 GOL GOL . I 5 GOL A 1 703 7 GOL GOL . J 6 NS4 A 1 704 1 NS4 NS4 . K 7 HEM A 1 705 601 HEM HEM . L 8 NAG A 1 706 681 NAG NAG . M 9 BOG A 1 707 703 BOG BOG . N 10 MAN B 1 701 673 MAN MAN . O 5 GOL B 1 702 2 GOL GOL . P 5 GOL B 1 703 3 GOL GOL . Q 5 GOL B 1 704 4 GOL GOL . R 6 NS4 B 1 705 1 NS4 NS4 . S 7 HEM B 1 706 601 HEM HEM . T 8 NAG B 1 707 681 NAG NAG . U 11 HOH A 1 801 268 HOH HOH . U 11 HOH A 2 802 330 HOH HOH . U 11 HOH A 3 803 280 HOH HOH . U 11 HOH A 4 804 328 HOH HOH . U 11 HOH A 5 805 189 HOH HOH . U 11 HOH A 6 806 314 HOH HOH . U 11 HOH A 7 807 247 HOH HOH . U 11 HOH A 8 808 75 HOH HOH . U 11 HOH A 9 809 40 HOH HOH . U 11 HOH A 10 810 33 HOH HOH . U 11 HOH A 11 811 256 HOH HOH . U 11 HOH A 12 812 38 HOH HOH . U 11 HOH A 13 813 284 HOH HOH . U 11 HOH A 14 814 245 HOH HOH . U 11 HOH A 15 815 69 HOH HOH . U 11 HOH A 16 816 17 HOH HOH . U 11 HOH A 17 817 91 HOH HOH . U 11 HOH A 18 818 59 HOH HOH . U 11 HOH A 19 819 28 HOH HOH . U 11 HOH A 20 820 243 HOH HOH . U 11 HOH A 21 821 220 HOH HOH . U 11 HOH A 22 822 315 HOH HOH . U 11 HOH A 23 823 258 HOH HOH . U 11 HOH A 24 824 333 HOH HOH . U 11 HOH A 25 825 13 HOH HOH . U 11 HOH A 26 826 322 HOH HOH . U 11 HOH A 27 827 309 HOH HOH . U 11 HOH A 28 828 222 HOH HOH . U 11 HOH A 29 829 48 HOH HOH . U 11 HOH A 30 830 252 HOH HOH . U 11 HOH A 31 831 229 HOH HOH . U 11 HOH A 32 832 5 HOH HOH . U 11 HOH A 33 833 215 HOH HOH . U 11 HOH A 34 834 240 HOH HOH . U 11 HOH A 35 835 279 HOH HOH . U 11 HOH A 36 836 42 HOH HOH . U 11 HOH A 37 837 334 HOH HOH . U 11 HOH A 38 838 112 HOH HOH . U 11 HOH A 39 839 249 HOH HOH . U 11 HOH A 40 840 250 HOH HOH . U 11 HOH A 41 841 274 HOH HOH . U 11 HOH A 42 842 88 HOH HOH . U 11 HOH A 43 843 8 HOH HOH . U 11 HOH A 44 844 10 HOH HOH . U 11 HOH A 45 845 319 HOH HOH . U 11 HOH A 46 846 221 HOH HOH . U 11 HOH A 47 847 269 HOH HOH . U 11 HOH A 48 848 327 HOH HOH . U 11 HOH A 49 849 291 HOH HOH . U 11 HOH A 50 850 337 HOH HOH . U 11 HOH A 51 851 304 HOH HOH . U 11 HOH A 52 852 95 HOH HOH . U 11 HOH A 53 853 336 HOH HOH . U 11 HOH A 54 854 98 HOH HOH . U 11 HOH A 55 855 36 HOH HOH . U 11 HOH A 56 856 331 HOH HOH . U 11 HOH A 57 857 183 HOH HOH . U 11 HOH A 58 858 338 HOH HOH . U 11 HOH A 59 859 266 HOH HOH . V 11 HOH B 1 801 289 HOH HOH . V 11 HOH B 2 802 18 HOH HOH . V 11 HOH B 3 803 303 HOH HOH . V 11 HOH B 4 804 321 HOH HOH . V 11 HOH B 5 805 51 HOH HOH . V 11 HOH B 6 806 239 HOH HOH . V 11 HOH B 7 807 126 HOH HOH . V 11 HOH B 8 808 210 HOH HOH . V 11 HOH B 9 809 313 HOH HOH . V 11 HOH B 10 810 244 HOH HOH . V 11 HOH B 11 811 237 HOH HOH . V 11 HOH B 12 812 329 HOH HOH . V 11 HOH B 13 813 37 HOH HOH . V 11 HOH B 14 814 248 HOH HOH . V 11 HOH B 15 815 246 HOH HOH . V 11 HOH B 16 816 29 HOH HOH . V 11 HOH B 17 817 302 HOH HOH . V 11 HOH B 18 818 206 HOH HOH . V 11 HOH B 19 819 238 HOH HOH . V 11 HOH B 20 820 131 HOH HOH . V 11 HOH B 21 821 260 HOH HOH . V 11 HOH B 22 822 234 HOH HOH . V 11 HOH B 23 823 236 HOH HOH . V 11 HOH B 24 824 265 HOH HOH . V 11 HOH B 25 825 70 HOH HOH . V 11 HOH B 26 826 202 HOH HOH . V 11 HOH B 27 827 270 HOH HOH . V 11 HOH B 28 828 227 HOH HOH . V 11 HOH B 29 829 165 HOH HOH . V 11 HOH B 30 830 251 HOH HOH . V 11 HOH B 31 831 267 HOH HOH . V 11 HOH B 32 832 52 HOH HOH . V 11 HOH B 33 833 25 HOH HOH . V 11 HOH B 34 834 27 HOH HOH . V 11 HOH B 35 835 233 HOH HOH . V 11 HOH B 36 836 273 HOH HOH . V 11 HOH B 37 837 3 HOH HOH . V 11 HOH B 38 838 298 HOH HOH . V 11 HOH B 39 839 231 HOH HOH . V 11 HOH B 40 840 158 HOH HOH . V 11 HOH B 41 841 163 HOH HOH . V 11 HOH B 42 842 332 HOH HOH . V 11 HOH B 43 843 35 HOH HOH . V 11 HOH B 44 844 56 HOH HOH . V 11 HOH B 45 845 141 HOH HOH . V 11 HOH B 46 846 209 HOH HOH . V 11 HOH B 47 847 2 HOH HOH . V 11 HOH B 48 848 232 HOH HOH . V 11 HOH B 49 849 235 HOH HOH . V 11 HOH B 50 850 301 HOH HOH . V 11 HOH B 51 851 308 HOH HOH . V 11 HOH B 52 852 259 HOH HOH . V 11 HOH B 53 853 271 HOH HOH . V 11 HOH B 54 854 94 HOH HOH . V 11 HOH B 55 855 263 HOH HOH . V 11 HOH B 56 856 1 HOH HOH . V 11 HOH B 57 857 110 HOH HOH . V 11 HOH B 58 858 241 HOH HOH . V 11 HOH B 59 859 335 HOH HOH . V 11 HOH B 60 860 339 HOH HOH . V 11 HOH B 61 861 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . N 10 29.303 15.282 53.4 1 63.85 ? C1 MAN 701 B 1 HETATM 2 C C2 MAN . . . N 10 28.02 14.442 53.23 1 63.29 ? C2 MAN 701 B 1 HETATM 3 C C3 MAN . . . N 10 27.346 14.444 51.834 1 63.45 ? C3 MAN 701 B 1 HETATM 4 C C4 MAN . . . N 10 28.165 15.02 50.679 1 63.82 ? C4 MAN 701 B 1 HETATM 5 C C5 MAN . . . N 10 29.634 15.175 51.086 1 64.59 ? C5 MAN 701 B 1 HETATM 6 C C6 MAN . . . N 10 30.519 15.72 49.957 1 65.05 ? C6 MAN 701 B 1 HETATM 7 O O2 MAN . . . N 10 27.102 14.829 54.23 1 61.66 ? O2 MAN 701 B 1 HETATM 8 O O3 MAN . . . N 10 26.135 15.155 51.857 1 63.33 ? O3 MAN 701 B 1 HETATM 9 O O4 MAN . . . N 10 27.991 14.208 49.541 1 63.13 ? O4 MAN 701 B 1 HETATM 10 O O5 MAN . . . N 10 29.658 16.022 52.237 1 63.82 ? O5 MAN 701 B 1 HETATM 11 O O6 MAN . . . N 10 31.502 14.777 49.593 1 65.24 ? O6 MAN 701 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #