data_3QMO
#
_model_server_result.job_id            PGKTZjlsqmayf9Ssekv0gw 
_model_server_result.datetime_utc      '2024-12-26 15:48:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qmo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":704}' 
#
_entry.id    3QMO 
#
_exptl.entry_id    3QMO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QMO 
_cell.length_a            120.428 
_cell.length_b            131.213 
_cell.length_c            179.568 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG E 661 NAG 
2 n C NDG 2 C 2 NDG E 662 NDG 
3 n D NAG 1 D 1 NAG E 671 NAG 
3 n D NAG 2 D 2 NAG E 672 NAG 
2 n E NAG 1 E 1 NAG F 661 NAG 
2 n E NDG 2 E 2 NDG F 662 NDG 
4 n F NAG 1 F 1 NAG F 671 NAG 
4 n F NAG 2 F 2 NAG F 672 NAG 
4 n F BMA 3 F 3 BMA F 673 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 36 1_555 A SG CYS 38 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 28 A CYS 37 1_555 A SG CYS 151 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 A SG CYS 32 A CYS 41 1_555 A SG CYS 48 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 A SG CYS 50 A CYS 59 1_555 A SG CYS 60 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf5 A SG CYS 561 A CYS 569 1_555 A SG CYS 567 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf6 B SG CYS 27 B CYS 36 1_555 B SG CYS 38 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf7 B SG CYS 28 B CYS 37 1_555 B SG CYS 151 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 B SG CYS 32 B CYS 41 1_555 B SG CYS 48 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 B SG CYS 50 B CYS 59 1_555 B SG CYS 60 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf10 B SG CYS 561 B CYS 569 1_555 B SG CYS 567 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
covale ? covale1 A ND2 ASN 59 A ASN 68 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 136 A ASN 144 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale3 A ND2 ASN 402 A ASN 410 1_555 L C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? 
covale ? covale4 B ND2 ASN 59 B ASN 68 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale5 B ND2 ASN 136 B ASN 144 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? 
covale ? covale6 B ND2 ASN 402 B ASN 410 1_555 T C1 NAG . B NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NDG . E NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
metalc ? metalc1 A NE2 HIS 380 A HIS 388 1_555 K FE HEM . A HEM 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc2 B NE2 HIS 380 B HIS 388 1_555 S FE HEM . B HEM 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 201 n n 
C1 C2 GOL sing 202 n n 
C1 H11 GOL sing 203 n n 
C1 H12 GOL sing 204 n n 
O1 HO1 GOL sing 205 n n 
C2 O2 GOL sing 206 n n 
C2 C3 GOL sing 207 n n 
C2 H2 GOL sing 208 n n 
O2 HO2 GOL sing 209 n n 
C3 O3 GOL sing 210 n n 
C3 H31 GOL sing 211 n n 
C3 H32 GOL sing 212 n n 
O3 HO3 GOL sing 213 n n 
#
_atom_sites.entry_id                     3QMO 
_atom_sites.fract_transf_matrix[1][1]    0.008304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GOL A 1 701 1 GOL GOL . 
H 5 GOL A 1 702 6 GOL GOL . 
I 5 GOL A 1 703 7 GOL GOL . 
J 6 NS4 A 1 704 1 NS4 NS4 . 
K 7 HEM A 1 705 601 HEM HEM . 
L 8 NAG A 1 706 681 NAG NAG . 
M 9 BOG A 1 707 703 BOG BOG . 
N 10 MAN B 1 701 673 MAN MAN . 
O 5 GOL B 1 702 2 GOL GOL . 
P 5 GOL B 1 703 3 GOL GOL . 
Q 5 GOL B 1 704 4 GOL GOL . 
R 6 NS4 B 1 705 1 NS4 NS4 . 
S 7 HEM B 1 706 601 HEM HEM . 
T 8 NAG B 1 707 681 NAG NAG . 
U 11 HOH A 1 801 268 HOH HOH . 
U 11 HOH A 2 802 330 HOH HOH . 
U 11 HOH A 3 803 280 HOH HOH . 
U 11 HOH A 4 804 328 HOH HOH . 
U 11 HOH A 5 805 189 HOH HOH . 
U 11 HOH A 6 806 314 HOH HOH . 
U 11 HOH A 7 807 247 HOH HOH . 
U 11 HOH A 8 808 75 HOH HOH . 
U 11 HOH A 9 809 40 HOH HOH . 
U 11 HOH A 10 810 33 HOH HOH . 
U 11 HOH A 11 811 256 HOH HOH . 
U 11 HOH A 12 812 38 HOH HOH . 
U 11 HOH A 13 813 284 HOH HOH . 
U 11 HOH A 14 814 245 HOH HOH . 
U 11 HOH A 15 815 69 HOH HOH . 
U 11 HOH A 16 816 17 HOH HOH . 
U 11 HOH A 17 817 91 HOH HOH . 
U 11 HOH A 18 818 59 HOH HOH . 
U 11 HOH A 19 819 28 HOH HOH . 
U 11 HOH A 20 820 243 HOH HOH . 
U 11 HOH A 21 821 220 HOH HOH . 
U 11 HOH A 22 822 315 HOH HOH . 
U 11 HOH A 23 823 258 HOH HOH . 
U 11 HOH A 24 824 333 HOH HOH . 
U 11 HOH A 25 825 13 HOH HOH . 
U 11 HOH A 26 826 322 HOH HOH . 
U 11 HOH A 27 827 309 HOH HOH . 
U 11 HOH A 28 828 222 HOH HOH . 
U 11 HOH A 29 829 48 HOH HOH . 
U 11 HOH A 30 830 252 HOH HOH . 
U 11 HOH A 31 831 229 HOH HOH . 
U 11 HOH A 32 832 5 HOH HOH . 
U 11 HOH A 33 833 215 HOH HOH . 
U 11 HOH A 34 834 240 HOH HOH . 
U 11 HOH A 35 835 279 HOH HOH . 
U 11 HOH A 36 836 42 HOH HOH . 
U 11 HOH A 37 837 334 HOH HOH . 
U 11 HOH A 38 838 112 HOH HOH . 
U 11 HOH A 39 839 249 HOH HOH . 
U 11 HOH A 40 840 250 HOH HOH . 
U 11 HOH A 41 841 274 HOH HOH . 
U 11 HOH A 42 842 88 HOH HOH . 
U 11 HOH A 43 843 8 HOH HOH . 
U 11 HOH A 44 844 10 HOH HOH . 
U 11 HOH A 45 845 319 HOH HOH . 
U 11 HOH A 46 846 221 HOH HOH . 
U 11 HOH A 47 847 269 HOH HOH . 
U 11 HOH A 48 848 327 HOH HOH . 
U 11 HOH A 49 849 291 HOH HOH . 
U 11 HOH A 50 850 337 HOH HOH . 
U 11 HOH A 51 851 304 HOH HOH . 
U 11 HOH A 52 852 95 HOH HOH . 
U 11 HOH A 53 853 336 HOH HOH . 
U 11 HOH A 54 854 98 HOH HOH . 
U 11 HOH A 55 855 36 HOH HOH . 
U 11 HOH A 56 856 331 HOH HOH . 
U 11 HOH A 57 857 183 HOH HOH . 
U 11 HOH A 58 858 338 HOH HOH . 
U 11 HOH A 59 859 266 HOH HOH . 
V 11 HOH B 1 801 289 HOH HOH . 
V 11 HOH B 2 802 18 HOH HOH . 
V 11 HOH B 3 803 303 HOH HOH . 
V 11 HOH B 4 804 321 HOH HOH . 
V 11 HOH B 5 805 51 HOH HOH . 
V 11 HOH B 6 806 239 HOH HOH . 
V 11 HOH B 7 807 126 HOH HOH . 
V 11 HOH B 8 808 210 HOH HOH . 
V 11 HOH B 9 809 313 HOH HOH . 
V 11 HOH B 10 810 244 HOH HOH . 
V 11 HOH B 11 811 237 HOH HOH . 
V 11 HOH B 12 812 329 HOH HOH . 
V 11 HOH B 13 813 37 HOH HOH . 
V 11 HOH B 14 814 248 HOH HOH . 
V 11 HOH B 15 815 246 HOH HOH . 
V 11 HOH B 16 816 29 HOH HOH . 
V 11 HOH B 17 817 302 HOH HOH . 
V 11 HOH B 18 818 206 HOH HOH . 
V 11 HOH B 19 819 238 HOH HOH . 
V 11 HOH B 20 820 131 HOH HOH . 
V 11 HOH B 21 821 260 HOH HOH . 
V 11 HOH B 22 822 234 HOH HOH . 
V 11 HOH B 23 823 236 HOH HOH . 
V 11 HOH B 24 824 265 HOH HOH . 
V 11 HOH B 25 825 70 HOH HOH . 
V 11 HOH B 26 826 202 HOH HOH . 
V 11 HOH B 27 827 270 HOH HOH . 
V 11 HOH B 28 828 227 HOH HOH . 
V 11 HOH B 29 829 165 HOH HOH . 
V 11 HOH B 30 830 251 HOH HOH . 
V 11 HOH B 31 831 267 HOH HOH . 
V 11 HOH B 32 832 52 HOH HOH . 
V 11 HOH B 33 833 25 HOH HOH . 
V 11 HOH B 34 834 27 HOH HOH . 
V 11 HOH B 35 835 233 HOH HOH . 
V 11 HOH B 36 836 273 HOH HOH . 
V 11 HOH B 37 837 3 HOH HOH . 
V 11 HOH B 38 838 298 HOH HOH . 
V 11 HOH B 39 839 231 HOH HOH . 
V 11 HOH B 40 840 158 HOH HOH . 
V 11 HOH B 41 841 163 HOH HOH . 
V 11 HOH B 42 842 332 HOH HOH . 
V 11 HOH B 43 843 35 HOH HOH . 
V 11 HOH B 44 844 56 HOH HOH . 
V 11 HOH B 45 845 141 HOH HOH . 
V 11 HOH B 46 846 209 HOH HOH . 
V 11 HOH B 47 847 2 HOH HOH . 
V 11 HOH B 48 848 232 HOH HOH . 
V 11 HOH B 49 849 235 HOH HOH . 
V 11 HOH B 50 850 301 HOH HOH . 
V 11 HOH B 51 851 308 HOH HOH . 
V 11 HOH B 52 852 259 HOH HOH . 
V 11 HOH B 53 853 271 HOH HOH . 
V 11 HOH B 54 854 94 HOH HOH . 
V 11 HOH B 55 855 263 HOH HOH . 
V 11 HOH B 56 856 1 HOH HOH . 
V 11 HOH B 57 857 110 HOH HOH . 
V 11 HOH B 58 858 241 HOH HOH . 
V 11 HOH B 59 859 335 HOH HOH . 
V 11 HOH B 60 860 339 HOH HOH . 
V 11 HOH B 61 861 310 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . Q 5 30.762 24.751 23.161 1 59.1 ? C1 GOL 704 B 1 
HETATM 2 O O1 GOL . . . Q 5 29.988 23.974 22.223 1 57.54 ? O1 GOL 704 B 1 
HETATM 3 C C2 GOL . . . Q 5 29.892 25.781 23.92 1 59.27 ? C2 GOL 704 B 1 
HETATM 4 O O2 GOL . . . Q 5 29.429 25.228 25.159 1 59.69 ? O2 GOL 704 B 1 
HETATM 5 C C3 GOL . . . Q 5 30.697 27.053 24.23 1 58.96 ? C3 GOL 704 B 1 
HETATM 6 O O3 GOL . . . Q 5 30.198 27.645 25.441 1 58.1 ? O3 GOL 704 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#