data_3QNA # _model_server_result.job_id DSFpYS55tpCuNahjVKYpMw _model_server_result.datetime_utc '2024-11-09 02:03:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":121}' # _entry.id 3QNA # _exptl.entry_id 3QNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOPTERIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QNA _cell.length_a 112.714 _cell.length_b 115.882 _cell.length_c 155.185 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 36 A HIS 15 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A NE2 HIS 51 A HIS 30 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 A NE2 HIS 53 A HIS 32 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 G O9 BIO . A BIO 121 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 B NE2 HIS 36 B HIS 15 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 B NE2 HIS 51 B HIS 30 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 B NE2 HIS 53 B HIS 32 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc8 I O9 BIO . B BIO 121 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc9 C NE2 HIS 36 C HIS 15 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc10 C NE2 HIS 51 C HIS 30 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc11 C NE2 HIS 53 C HIS 32 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc12 K O9 BIO . C BIO 121 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc13 D NE2 HIS 36 D HIS 15 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 D NE2 HIS 51 D HIS 30 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc15 D NE2 HIS 53 D HIS 32 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc16 M O9 BIO . D BIO 121 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc17 E NE2 HIS 36 E HIS 15 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc18 E NE2 HIS 51 E HIS 30 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc19 E NE2 HIS 53 E HIS 32 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc20 O O9 BIO . E BIO 121 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc21 F NE2 HIS 36 F HIS 15 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc22 F NE2 HIS 51 F HIS 30 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc23 F NE2 HIS 53 F HIS 32 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc24 Q O9 BIO . F BIO 121 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C9 H11 N5 O3' _chem_comp.formula_weight 237.215 _chem_comp.id BIO _chem_comp.mon_nstd_flag . _chem_comp.name BIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BIO doub 70 n y N1 C8A BIO sing 71 n y N2 C2 BIO sing 72 n n N2 HN21 BIO sing 73 n n N2 HN22 BIO sing 74 n n C2 N3 BIO sing 75 n y N3 C4 BIO sing 76 n y N3 H3 BIO sing 77 n n C4 O4 BIO doub 78 n n C4 C4A BIO sing 79 n y C4A C8A BIO sing 80 n y C4A N5 BIO doub 81 n y C8A N8 BIO doub 82 n y N8 C7 BIO sing 83 n y C7 C6 BIO doub 84 n y C7 H7 BIO sing 85 n n C6 N5 BIO sing 86 n y C6 C9 BIO sing 87 n n C9 O9 BIO sing 88 n n C9 C10 BIO sing 89 n n C9 H9 BIO sing 90 n n O9 HO9 BIO sing 91 n n C10 O10 BIO sing 92 n n C10 C11 BIO sing 93 n n C10 H10 BIO sing 94 n n O10 HO1 BIO sing 95 n n C11 H111 BIO sing 96 n n C11 H112 BIO sing 97 n n C11 H113 BIO sing 98 n n # _atom_sites.entry_id 3QNA _atom_sites.fract_transf_matrix[1][1] 0.008872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 BIO A 1 121 1 BIO BIO . H 3 ZN A 1 122 1 ZN ZN . I 2 BIO B 1 121 2 BIO BIO . J 3 ZN B 1 122 2 ZN ZN . K 2 BIO C 1 121 3 BIO BIO . L 3 ZN C 1 122 3 ZN ZN . M 2 BIO D 1 121 4 BIO BIO . N 3 ZN D 1 122 4 ZN ZN . O 2 BIO E 1 121 5 BIO BIO . P 3 ZN E 1 122 5 ZN ZN . Q 2 BIO F 1 121 6 BIO BIO . R 3 ZN F 1 122 6 ZN ZN . S 4 HOH A 1 123 1 HOH HOH . S 4 HOH A 2 124 3 HOH HOH . S 4 HOH A 3 125 5 HOH HOH . S 4 HOH A 4 126 8 HOH HOH . S 4 HOH A 5 127 13 HOH HOH . S 4 HOH A 6 128 17 HOH HOH . S 4 HOH A 7 129 24 HOH HOH . S 4 HOH A 8 130 130 HOH HOH . S 4 HOH A 9 131 26 HOH HOH . S 4 HOH A 10 132 34 HOH HOH . S 4 HOH A 11 133 36 HOH HOH . S 4 HOH A 12 134 94 HOH HOH . T 4 HOH B 1 123 2 HOH HOH . T 4 HOH B 2 124 9 HOH HOH . T 4 HOH B 3 125 11 HOH HOH . T 4 HOH B 4 126 12 HOH HOH . T 4 HOH B 5 127 15 HOH HOH . T 4 HOH B 6 128 16 HOH HOH . T 4 HOH B 7 129 27 HOH HOH . T 4 HOH B 8 130 30 HOH HOH . T 4 HOH B 9 131 32 HOH HOH . T 4 HOH B 10 132 43 HOH HOH . T 4 HOH B 11 133 48 HOH HOH . T 4 HOH B 12 134 52 HOH HOH . T 4 HOH B 13 135 53 HOH HOH . T 4 HOH B 14 136 71 HOH HOH . T 4 HOH B 15 137 97 HOH HOH . T 4 HOH B 16 138 102 HOH HOH . T 4 HOH B 17 139 104 HOH HOH . T 4 HOH B 18 140 105 HOH HOH . T 4 HOH B 19 141 113 HOH HOH . T 4 HOH B 20 142 119 HOH HOH . U 4 HOH C 1 123 4 HOH HOH . U 4 HOH C 2 124 7 HOH HOH . U 4 HOH C 3 125 14 HOH HOH . U 4 HOH C 4 126 20 HOH HOH . U 4 HOH C 5 127 23 HOH HOH . U 4 HOH C 6 128 33 HOH HOH . U 4 HOH C 7 129 49 HOH HOH . U 4 HOH C 8 130 56 HOH HOH . U 4 HOH C 9 131 57 HOH HOH . U 4 HOH C 10 132 72 HOH HOH . U 4 HOH C 11 133 77 HOH HOH . U 4 HOH C 12 134 80 HOH HOH . U 4 HOH C 13 135 93 HOH HOH . V 4 HOH D 1 123 21 HOH HOH . V 4 HOH D 2 124 124 HOH HOH . V 4 HOH D 3 125 28 HOH HOH . V 4 HOH D 4 126 55 HOH HOH . V 4 HOH D 5 127 62 HOH HOH . V 4 HOH D 6 128 74 HOH HOH . V 4 HOH D 7 129 78 HOH HOH . V 4 HOH D 8 130 81 HOH HOH . V 4 HOH D 9 131 92 HOH HOH . V 4 HOH D 10 132 98 HOH HOH . V 4 HOH D 11 133 111 HOH HOH . W 4 HOH E 1 123 18 HOH HOH . W 4 HOH E 2 124 37 HOH HOH . W 4 HOH E 3 125 51 HOH HOH . W 4 HOH E 4 126 54 HOH HOH . W 4 HOH E 5 127 76 HOH HOH . W 4 HOH E 6 128 108 HOH HOH . W 4 HOH E 7 129 109 HOH HOH . X 4 HOH F 1 123 10 HOH HOH . X 4 HOH F 2 124 19 HOH HOH . X 4 HOH F 3 125 31 HOH HOH . X 4 HOH F 4 126 41 HOH HOH . X 4 HOH F 5 127 44 HOH HOH . X 4 HOH F 6 128 128 HOH HOH . X 4 HOH F 7 129 50 HOH HOH . X 4 HOH F 8 130 65 HOH HOH . X 4 HOH F 9 131 67 HOH HOH . X 4 HOH F 10 132 70 HOH HOH . X 4 HOH F 11 133 91 HOH HOH . X 4 HOH F 12 134 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BIO . . . I 2 29.431 57.362 17.73 1 19.9 ? N1 BIO 121 B 1 HETATM 2 N N2 BIO . . . I 2 28.868 58.548 19.692 1 21.59 ? N2 BIO 121 B 1 HETATM 3 C C2 BIO . . . I 2 28.496 57.897 18.575 1 21.75 ? C2 BIO 121 B 1 HETATM 4 N N3 BIO . . . I 2 27.163 57.815 18.345 1 21.66 ? N3 BIO 121 B 1 HETATM 5 C C4 BIO . . . I 2 26.704 57.175 17.253 1 20.62 ? C4 BIO 121 B 1 HETATM 6 O O4 BIO . . . I 2 25.472 57.044 17.019 1 21.19 ? O4 BIO 121 B 1 HETATM 7 C C4A BIO . . . I 2 27.617 56.624 16.382 1 20.51 ? C4A BIO 121 B 1 HETATM 8 C C8A BIO . . . I 2 28.99 56.709 16.626 1 19.79 ? C8A BIO 121 B 1 HETATM 9 N N8 BIO . . . I 2 29.849 56.153 15.723 1 19.91 ? N8 BIO 121 B 1 HETATM 10 C C7 BIO . . . I 2 29.391 55.512 14.609 1 20.45 ? C7 BIO 121 B 1 HETATM 11 C C6 BIO . . . I 2 28.005 55.403 14.405 1 25.58 ? C6 BIO 121 B 1 HETATM 12 N N5 BIO . . . I 2 27.142 55.979 15.287 1 23.93 ? N5 BIO 121 B 1 HETATM 13 C C9 BIO . . . I 2 27.447 54.718 13.206 1 31.68 ? C9 BIO 121 B 1 HETATM 14 O O9 BIO . . . I 2 26.019 54.746 13.075 1 31.31 ? O9 BIO 121 B 1 HETATM 15 C C10 BIO . . . I 2 27.874 53.299 13.266 1 37.36 ? C10 BIO 121 B 1 HETATM 16 O O10 BIO . . . I 2 28.999 53.251 12.404 1 42.26 ? O10 BIO 121 B 1 HETATM 17 C C11 BIO . . . I 2 26.812 52.412 12.687 1 37.68 ? C11 BIO 121 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 17 #