data_3QNA
#
_model_server_result.job_id            pli9Sgem1H4yiYsMqjcl9A 
_model_server_result.datetime_utc      '2024-11-26 18:32:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qna 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":121}' 
#
_entry.id    3QNA 
#
_exptl.entry_id    3QNA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              237.215 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BIOPTERIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QNA 
_cell.length_a            112.714 
_cell.length_b            115.882 
_cell.length_c            155.185 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QNA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 36 A HIS 15 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc2 A NE2 HIS 51 A HIS 30 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc3 A NE2 HIS 53 A HIS 32 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc4 G O9 BIO . A BIO 121 1_555 H ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc5 B NE2 HIS 36 B HIS 15 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 B NE2 HIS 51 B HIS 30 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc7 B NE2 HIS 53 B HIS 32 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc8 I O9 BIO . B BIO 121 1_555 J ZN ZN . B ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc9 C NE2 HIS 36 C HIS 15 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc10 C NE2 HIS 51 C HIS 30 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc11 C NE2 HIS 53 C HIS 32 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc12 K O9 BIO . C BIO 121 1_555 L ZN ZN . C ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc13 D NE2 HIS 36 D HIS 15 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc14 D NE2 HIS 51 D HIS 30 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc15 D NE2 HIS 53 D HIS 32 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc16 M O9 BIO . D BIO 121 1_555 N ZN ZN . D ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc17 E NE2 HIS 36 E HIS 15 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc18 E NE2 HIS 51 E HIS 30 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc19 E NE2 HIS 53 E HIS 32 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc20 O O9 BIO . E BIO 121 1_555 P ZN ZN . E ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc21 F NE2 HIS 36 F HIS 15 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc22 F NE2 HIS 51 F HIS 30 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc23 F NE2 HIS 53 F HIS 32 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc24 Q O9 BIO . F BIO 121 1_555 R ZN ZN . F ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C9 H11 N5 O3' 
_chem_comp.formula_weight    237.215 
_chem_comp.id                BIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 BIO doub 70 n y 
N1 C8A BIO sing 71 n y 
N2 C2 BIO sing 72 n n 
N2 HN21 BIO sing 73 n n 
N2 HN22 BIO sing 74 n n 
C2 N3 BIO sing 75 n y 
N3 C4 BIO sing 76 n y 
N3 H3 BIO sing 77 n n 
C4 O4 BIO doub 78 n n 
C4 C4A BIO sing 79 n y 
C4A C8A BIO sing 80 n y 
C4A N5 BIO doub 81 n y 
C8A N8 BIO doub 82 n y 
N8 C7 BIO sing 83 n y 
C7 C6 BIO doub 84 n y 
C7 H7 BIO sing 85 n n 
C6 N5 BIO sing 86 n y 
C6 C9 BIO sing 87 n n 
C9 O9 BIO sing 88 n n 
C9 C10 BIO sing 89 n n 
C9 H9 BIO sing 90 n n 
O9 HO9 BIO sing 91 n n 
C10 O10 BIO sing 92 n n 
C10 C11 BIO sing 93 n n 
C10 H10 BIO sing 94 n n 
O10 HO1 BIO sing 95 n n 
C11 H111 BIO sing 96 n n 
C11 H112 BIO sing 97 n n 
C11 H113 BIO sing 98 n n 
#
_atom_sites.entry_id                     3QNA 
_atom_sites.fract_transf_matrix[1][1]    0.008872 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 BIO A 1 121 1 BIO BIO . 
H 3 ZN A 1 122 1 ZN ZN . 
I 2 BIO B 1 121 2 BIO BIO . 
J 3 ZN B 1 122 2 ZN ZN . 
K 2 BIO C 1 121 3 BIO BIO . 
L 3 ZN C 1 122 3 ZN ZN . 
M 2 BIO D 1 121 4 BIO BIO . 
N 3 ZN D 1 122 4 ZN ZN . 
O 2 BIO E 1 121 5 BIO BIO . 
P 3 ZN E 1 122 5 ZN ZN . 
Q 2 BIO F 1 121 6 BIO BIO . 
R 3 ZN F 1 122 6 ZN ZN . 
S 4 HOH A 1 123 1 HOH HOH . 
S 4 HOH A 2 124 3 HOH HOH . 
S 4 HOH A 3 125 5 HOH HOH . 
S 4 HOH A 4 126 8 HOH HOH . 
S 4 HOH A 5 127 13 HOH HOH . 
S 4 HOH A 6 128 17 HOH HOH . 
S 4 HOH A 7 129 24 HOH HOH . 
S 4 HOH A 8 130 130 HOH HOH . 
S 4 HOH A 9 131 26 HOH HOH . 
S 4 HOH A 10 132 34 HOH HOH . 
S 4 HOH A 11 133 36 HOH HOH . 
S 4 HOH A 12 134 94 HOH HOH . 
T 4 HOH B 1 123 2 HOH HOH . 
T 4 HOH B 2 124 9 HOH HOH . 
T 4 HOH B 3 125 11 HOH HOH . 
T 4 HOH B 4 126 12 HOH HOH . 
T 4 HOH B 5 127 15 HOH HOH . 
T 4 HOH B 6 128 16 HOH HOH . 
T 4 HOH B 7 129 27 HOH HOH . 
T 4 HOH B 8 130 30 HOH HOH . 
T 4 HOH B 9 131 32 HOH HOH . 
T 4 HOH B 10 132 43 HOH HOH . 
T 4 HOH B 11 133 48 HOH HOH . 
T 4 HOH B 12 134 52 HOH HOH . 
T 4 HOH B 13 135 53 HOH HOH . 
T 4 HOH B 14 136 71 HOH HOH . 
T 4 HOH B 15 137 97 HOH HOH . 
T 4 HOH B 16 138 102 HOH HOH . 
T 4 HOH B 17 139 104 HOH HOH . 
T 4 HOH B 18 140 105 HOH HOH . 
T 4 HOH B 19 141 113 HOH HOH . 
T 4 HOH B 20 142 119 HOH HOH . 
U 4 HOH C 1 123 4 HOH HOH . 
U 4 HOH C 2 124 7 HOH HOH . 
U 4 HOH C 3 125 14 HOH HOH . 
U 4 HOH C 4 126 20 HOH HOH . 
U 4 HOH C 5 127 23 HOH HOH . 
U 4 HOH C 6 128 33 HOH HOH . 
U 4 HOH C 7 129 49 HOH HOH . 
U 4 HOH C 8 130 56 HOH HOH . 
U 4 HOH C 9 131 57 HOH HOH . 
U 4 HOH C 10 132 72 HOH HOH . 
U 4 HOH C 11 133 77 HOH HOH . 
U 4 HOH C 12 134 80 HOH HOH . 
U 4 HOH C 13 135 93 HOH HOH . 
V 4 HOH D 1 123 21 HOH HOH . 
V 4 HOH D 2 124 124 HOH HOH . 
V 4 HOH D 3 125 28 HOH HOH . 
V 4 HOH D 4 126 55 HOH HOH . 
V 4 HOH D 5 127 62 HOH HOH . 
V 4 HOH D 6 128 74 HOH HOH . 
V 4 HOH D 7 129 78 HOH HOH . 
V 4 HOH D 8 130 81 HOH HOH . 
V 4 HOH D 9 131 92 HOH HOH . 
V 4 HOH D 10 132 98 HOH HOH . 
V 4 HOH D 11 133 111 HOH HOH . 
W 4 HOH E 1 123 18 HOH HOH . 
W 4 HOH E 2 124 37 HOH HOH . 
W 4 HOH E 3 125 51 HOH HOH . 
W 4 HOH E 4 126 54 HOH HOH . 
W 4 HOH E 5 127 76 HOH HOH . 
W 4 HOH E 6 128 108 HOH HOH . 
W 4 HOH E 7 129 109 HOH HOH . 
X 4 HOH F 1 123 10 HOH HOH . 
X 4 HOH F 2 124 19 HOH HOH . 
X 4 HOH F 3 125 31 HOH HOH . 
X 4 HOH F 4 126 41 HOH HOH . 
X 4 HOH F 5 127 44 HOH HOH . 
X 4 HOH F 6 128 128 HOH HOH . 
X 4 HOH F 7 129 50 HOH HOH . 
X 4 HOH F 8 130 65 HOH HOH . 
X 4 HOH F 9 131 67 HOH HOH . 
X 4 HOH F 10 132 70 HOH HOH . 
X 4 HOH F 11 133 91 HOH HOH . 
X 4 HOH F 12 134 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BIO . . . M 2 13.905 16.407 31.165 1 26.37 ? N1 BIO 121 D 1 
HETATM 2 N N2 BIO . . . M 2 14.224 15.23 29.205 1 26.03 ? N2 BIO 121 D 1 
HETATM 3 C C2 BIO . . . M 2 13.557 16.168 29.892 1 26.81 ? C2 BIO 121 D 1 
HETATM 4 N N3 BIO . . . M 2 12.579 16.855 29.293 1 27.63 ? N3 BIO 121 D 1 
HETATM 5 C C4 BIO . . . M 2 11.932 17.797 29.971 1 27.15 ? C4 BIO 121 D 1 
HETATM 6 O O4 BIO . . . M 2 11.032 18.49 29.472 1 24.92 ? O4 BIO 121 D 1 
HETATM 7 C C4A BIO . . . M 2 12.264 18.049 31.281 1 29.16 ? C4A BIO 121 D 1 
HETATM 8 C C8A BIO . . . M 2 13.257 17.333 31.913 1 27.05 ? C8A BIO 121 D 1 
HETATM 9 N N8 BIO . . . M 2 13.528 17.568 33.23 1 26.38 ? N8 BIO 121 D 1 
HETATM 10 C C7 BIO . . . M 2 12.9 18.522 33.904 1 28.83 ? C7 BIO 121 D 1 
HETATM 11 C C6 BIO . . . M 2 11.893 19.266 33.237 1 34.38 ? C6 BIO 121 D 1 
HETATM 12 N N5 BIO . . . M 2 11.594 18.998 31.943 1 31.81 ? N5 BIO 121 D 1 
HETATM 13 C C9 BIO . . . M 2 11.101 20.357 33.892 1 35.58 ? C9 BIO 121 D 1 
HETATM 14 O O9 BIO . . . M 2 10.37 21.18 32.958 1 38.31 ? O9 BIO 121 D 1 
HETATM 15 C C10 BIO . . . M 2 12.105 21.299 34.481 1 36.88 ? C10 BIO 121 D 1 
HETATM 16 O O10 BIO . . . M 2 12.419 20.745 35.741 1 41.71 ? O10 BIO 121 D 1 
HETATM 17 C C11 BIO . . . M 2 11.547 22.686 34.71 1 37.24 ? C11 BIO 121 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#