data_3QNF # _model_server_result.job_id O_7ndlI7MNix7IFKXWVVbA _model_server_result.datetime_utc '2024-12-23 18:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5000}' # _entry.id 3QNF # _exptl.entry_id 3QNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QNF _cell.length_a 97.246 _cell.length_b 132.816 _cell.length_c 233.687 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,L 1 1 B,F,G,H,M 2 1 C,I,J,K,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG D 1001 NAG 2 n D NAG 2 D 2 NAG D 1002 NAG 2 n D MAN 3 D 3 MAN D 1004 MAN 2 n D MAN 4 D 4 MAN D 1005 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 410 A CYS 404 1_555 A SG CYS 449 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 742 A CYS 736 1_555 A SG CYS 749 A CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 410 B CYS 404 1_555 B SG CYS 449 B CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 C SG CYS 410 C CYS 404 1_555 C SG CYS 449 C CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 76 A ASN 70 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 76 B ASN 70 1_555 H C1 NAG . B NAG 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B ND2 ASN 160 B ASN 154 1_555 G C1 NAG . B NAG 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 C ND2 ASN 76 C ASN 70 1_555 J C1 NAG . C NAG 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 C ND2 ASN 160 C ASN 154 1_555 K C1 NAG . C NAG 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 D O6 MAN . D MAN 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A NE2 HIS 359 A HIS 353 1_555 E ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A NE2 HIS 363 A HIS 357 1_555 E ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OE2 GLU 382 A GLU 376 1_555 E ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 A OE1 GLU 382 A GLU 376 1_555 E ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 B NE2 HIS 359 B HIS 353 1_555 F ZN ZN . B ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 B NE2 HIS 363 B HIS 357 1_555 F ZN ZN . B ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 B OE2 GLU 382 B GLU 376 1_555 F ZN ZN . B ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc8 B OE1 GLU 382 B GLU 376 1_555 F ZN ZN . B ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc9 C NE2 HIS 359 C HIS 353 1_555 I ZN ZN . C ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 C NE2 HIS 363 C HIS 357 1_555 I ZN ZN . C ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 C OE2 GLU 382 C GLU 376 1_555 I ZN ZN . C ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc12 C OE1 GLU 382 C GLU 376 1_555 I ZN ZN . C ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QNF _atom_sites.fract_transf_matrix[1][1] 0.010283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 5000 5000 ZN ZN . F 3 ZN B 1 5000 5000 ZN ZN . G 4 NAG B 1 1154 1154 NAG NAG . H 4 NAG B 1 1070 1070 NAG NAG . I 3 ZN C 1 5000 5000 ZN ZN . J 4 NAG C 1 1070 1070 NAG NAG . K 4 NAG C 1 1154 1154 NAG NAG . L 5 HOH A 1 949 2 HOH HOH . L 5 HOH A 2 950 14 HOH HOH . L 5 HOH A 3 951 26 HOH HOH . L 5 HOH A 4 952 27 HOH HOH . L 5 HOH A 5 953 28 HOH HOH . L 5 HOH A 6 954 29 HOH HOH . L 5 HOH A 7 955 30 HOH HOH . L 5 HOH A 8 956 31 HOH HOH . M 5 HOH B 1 949 1 HOH HOH . M 5 HOH B 2 950 3 HOH HOH . M 5 HOH B 3 951 4 HOH HOH . M 5 HOH B 4 952 5 HOH HOH . M 5 HOH B 5 953 6 HOH HOH . M 5 HOH B 6 954 7 HOH HOH . M 5 HOH B 7 955 8 HOH HOH . M 5 HOH B 8 956 9 HOH HOH . M 5 HOH B 9 957 10 HOH HOH . M 5 HOH B 10 958 13 HOH HOH . M 5 HOH B 11 959 20 HOH HOH . M 5 HOH B 12 960 32 HOH HOH . M 5 HOH B 13 961 33 HOH HOH . M 5 HOH B 14 962 34 HOH HOH . M 5 HOH B 15 963 35 HOH HOH . M 5 HOH B 16 964 36 HOH HOH . M 5 HOH B 17 965 37 HOH HOH . M 5 HOH B 18 966 38 HOH HOH . M 5 HOH B 19 967 39 HOH HOH . N 5 HOH C 1 949 11 HOH HOH . N 5 HOH C 2 950 12 HOH HOH . N 5 HOH C 3 951 15 HOH HOH . N 5 HOH C 4 952 16 HOH HOH . N 5 HOH C 5 953 17 HOH HOH . N 5 HOH C 6 954 18 HOH HOH . N 5 HOH C 7 955 19 HOH HOH . N 5 HOH C 8 956 21 HOH HOH . N 5 HOH C 9 957 22 HOH HOH . N 5 HOH C 10 958 23 HOH HOH . N 5 HOH C 11 959 24 HOH HOH . N 5 HOH C 12 960 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 71.338 _atom_site.Cartn_y 22.732 _atom_site.Cartn_z 45.81 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.28 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 5000 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #