data_3QNV # _model_server_result.job_id bD00PTPLZEou1yHb9yZPzA _model_server_result.datetime_utc '2024-12-02 12:15:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":328}' # _entry.id 3QNV # _exptl.entry_id 3QNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QNV _cell.length_a 158.002 _cell.length_b 158.002 _cell.length_c 103.913 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 155 A CYS 155 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 314 A CYS 314 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A OE1 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc3 A OE2 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc4 A ND1 HIS 204 A HIS 204 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 K O HOH . A HOH 339 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3QNV _atom_sites.fract_transf_matrix[1][1] 0.006329 _atom_sites.fract_transf_matrix[1][2] 0.003654 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 400 400 ZN ZN . C 3 SO4 A 1 405 405 SO4 SO4 . D 3 SO4 A 1 324 1 SO4 SO4 . E 3 SO4 A 1 325 1 SO4 SO4 . F 3 SO4 A 1 326 2 SO4 SO4 . G 4 GOL A 1 327 1 GOL GOL . H 4 GOL A 1 328 1 GOL GOL . I 4 GOL A 1 329 1 GOL GOL . J 4 GOL A 1 330 1 GOL GOL . K 5 HOH A 1 331 1 HOH HOH . K 5 HOH A 2 332 2 HOH HOH . K 5 HOH A 3 333 4 HOH HOH . K 5 HOH A 4 334 5 HOH HOH . K 5 HOH A 5 335 6 HOH HOH . K 5 HOH A 6 336 7 HOH HOH . K 5 HOH A 7 337 8 HOH HOH . K 5 HOH A 8 338 9 HOH HOH . K 5 HOH A 9 339 10 HOH HOH . K 5 HOH A 10 340 11 HOH HOH . K 5 HOH A 11 341 12 HOH HOH . K 5 HOH A 12 342 13 HOH HOH . K 5 HOH A 13 343 14 HOH HOH . K 5 HOH A 14 344 15 HOH HOH . K 5 HOH A 15 345 17 HOH HOH . K 5 HOH A 16 346 18 HOH HOH . K 5 HOH A 17 347 19 HOH HOH . K 5 HOH A 18 348 20 HOH HOH . K 5 HOH A 19 349 21 HOH HOH . K 5 HOH A 20 350 22 HOH HOH . K 5 HOH A 21 351 23 HOH HOH . K 5 HOH A 22 352 24 HOH HOH . K 5 HOH A 23 353 25 HOH HOH . K 5 HOH A 24 354 26 HOH HOH . K 5 HOH A 25 355 27 HOH HOH . K 5 HOH A 26 356 28 HOH HOH . K 5 HOH A 27 357 29 HOH HOH . K 5 HOH A 28 358 30 HOH HOH . K 5 HOH A 29 359 31 HOH HOH . K 5 HOH A 30 360 32 HOH HOH . K 5 HOH A 31 361 33 HOH HOH . K 5 HOH A 32 362 34 HOH HOH . K 5 HOH A 33 363 35 HOH HOH . K 5 HOH A 34 364 36 HOH HOH . K 5 HOH A 35 365 37 HOH HOH . K 5 HOH A 36 366 38 HOH HOH . K 5 HOH A 37 367 39 HOH HOH . K 5 HOH A 38 368 40 HOH HOH . K 5 HOH A 39 369 41 HOH HOH . K 5 HOH A 40 370 42 HOH HOH . K 5 HOH A 41 371 43 HOH HOH . K 5 HOH A 42 372 44 HOH HOH . K 5 HOH A 43 373 45 HOH HOH . K 5 HOH A 44 374 46 HOH HOH . K 5 HOH A 45 375 47 HOH HOH . K 5 HOH A 46 376 48 HOH HOH . K 5 HOH A 47 377 49 HOH HOH . K 5 HOH A 48 378 50 HOH HOH . K 5 HOH A 49 379 51 HOH HOH . K 5 HOH A 50 380 52 HOH HOH . K 5 HOH A 51 381 53 HOH HOH . K 5 HOH A 52 382 54 HOH HOH . K 5 HOH A 53 383 55 HOH HOH . K 5 HOH A 54 384 56 HOH HOH . K 5 HOH A 55 385 57 HOH HOH . K 5 HOH A 56 386 58 HOH HOH . K 5 HOH A 57 387 59 HOH HOH . K 5 HOH A 58 388 60 HOH HOH . K 5 HOH A 59 389 61 HOH HOH . K 5 HOH A 60 390 62 HOH HOH . K 5 HOH A 61 391 63 HOH HOH . K 5 HOH A 62 392 64 HOH HOH . K 5 HOH A 63 393 65 HOH HOH . K 5 HOH A 64 394 66 HOH HOH . K 5 HOH A 65 395 67 HOH HOH . K 5 HOH A 66 396 68 HOH HOH . K 5 HOH A 67 397 69 HOH HOH . K 5 HOH A 68 398 70 HOH HOH . K 5 HOH A 69 399 71 HOH HOH . K 5 HOH A 70 401 72 HOH HOH . K 5 HOH A 71 402 73 HOH HOH . K 5 HOH A 72 403 75 HOH HOH . K 5 HOH A 73 404 76 HOH HOH . K 5 HOH A 74 406 77 HOH HOH . K 5 HOH A 75 407 78 HOH HOH . K 5 HOH A 76 408 79 HOH HOH . K 5 HOH A 77 409 80 HOH HOH . K 5 HOH A 78 410 81 HOH HOH . K 5 HOH A 79 411 82 HOH HOH . K 5 HOH A 80 412 83 HOH HOH . K 5 HOH A 81 413 84 HOH HOH . K 5 HOH A 82 414 85 HOH HOH . K 5 HOH A 83 415 86 HOH HOH . K 5 HOH A 84 416 89 HOH HOH . K 5 HOH A 85 417 90 HOH HOH . K 5 HOH A 86 418 91 HOH HOH . K 5 HOH A 87 419 92 HOH HOH . K 5 HOH A 88 420 93 HOH HOH . K 5 HOH A 89 421 94 HOH HOH . K 5 HOH A 90 422 95 HOH HOH . K 5 HOH A 91 423 96 HOH HOH . K 5 HOH A 92 424 97 HOH HOH . K 5 HOH A 93 425 98 HOH HOH . K 5 HOH A 94 426 99 HOH HOH . K 5 HOH A 95 427 100 HOH HOH . K 5 HOH A 96 428 101 HOH HOH . K 5 HOH A 97 429 102 HOH HOH . K 5 HOH A 98 430 104 HOH HOH . K 5 HOH A 99 431 105 HOH HOH . K 5 HOH A 100 432 106 HOH HOH . K 5 HOH A 101 433 107 HOH HOH . K 5 HOH A 102 434 108 HOH HOH . K 5 HOH A 103 435 109 HOH HOH . K 5 HOH A 104 436 110 HOH HOH . K 5 HOH A 105 437 111 HOH HOH . K 5 HOH A 106 438 112 HOH HOH . K 5 HOH A 107 439 113 HOH HOH . K 5 HOH A 108 440 114 HOH HOH . K 5 HOH A 109 441 115 HOH HOH . K 5 HOH A 110 442 116 HOH HOH . K 5 HOH A 111 443 117 HOH HOH . K 5 HOH A 112 444 118 HOH HOH . K 5 HOH A 113 445 119 HOH HOH . K 5 HOH A 114 446 120 HOH HOH . K 5 HOH A 115 447 121 HOH HOH . K 5 HOH A 116 448 122 HOH HOH . K 5 HOH A 117 449 123 HOH HOH . K 5 HOH A 118 450 124 HOH HOH . K 5 HOH A 119 451 125 HOH HOH . K 5 HOH A 120 452 126 HOH HOH . K 5 HOH A 121 453 127 HOH HOH . K 5 HOH A 122 454 128 HOH HOH . K 5 HOH A 123 455 129 HOH HOH . K 5 HOH A 124 456 130 HOH HOH . K 5 HOH A 125 457 131 HOH HOH . K 5 HOH A 126 458 132 HOH HOH . K 5 HOH A 127 459 133 HOH HOH . K 5 HOH A 128 460 134 HOH HOH . K 5 HOH A 129 461 135 HOH HOH . K 5 HOH A 130 462 136 HOH HOH . K 5 HOH A 131 463 137 HOH HOH . K 5 HOH A 132 464 138 HOH HOH . K 5 HOH A 133 465 139 HOH HOH . K 5 HOH A 134 466 140 HOH HOH . K 5 HOH A 135 467 141 HOH HOH . K 5 HOH A 136 468 142 HOH HOH . K 5 HOH A 137 469 143 HOH HOH . K 5 HOH A 138 470 144 HOH HOH . K 5 HOH A 139 471 145 HOH HOH . K 5 HOH A 140 472 146 HOH HOH . K 5 HOH A 141 473 147 HOH HOH . K 5 HOH A 142 474 148 HOH HOH . K 5 HOH A 143 475 149 HOH HOH . K 5 HOH A 144 476 150 HOH HOH . K 5 HOH A 145 477 151 HOH HOH . K 5 HOH A 146 478 152 HOH HOH . K 5 HOH A 147 479 153 HOH HOH . K 5 HOH A 148 480 154 HOH HOH . K 5 HOH A 149 481 155 HOH HOH . K 5 HOH A 150 482 156 HOH HOH . K 5 HOH A 151 483 157 HOH HOH . K 5 HOH A 152 484 158 HOH HOH . K 5 HOH A 153 485 159 HOH HOH . K 5 HOH A 154 486 160 HOH HOH . K 5 HOH A 155 487 161 HOH HOH . K 5 HOH A 156 488 162 HOH HOH . K 5 HOH A 157 489 163 HOH HOH . K 5 HOH A 158 490 164 HOH HOH . K 5 HOH A 159 491 165 HOH HOH . K 5 HOH A 160 492 166 HOH HOH . K 5 HOH A 161 493 167 HOH HOH . K 5 HOH A 162 494 168 HOH HOH . K 5 HOH A 163 495 169 HOH HOH . K 5 HOH A 164 496 170 HOH HOH . K 5 HOH A 165 497 171 HOH HOH . K 5 HOH A 166 498 172 HOH HOH . K 5 HOH A 167 499 173 HOH HOH . K 5 HOH A 168 500 174 HOH HOH . K 5 HOH A 169 501 175 HOH HOH . K 5 HOH A 170 502 176 HOH HOH . K 5 HOH A 171 503 177 HOH HOH . K 5 HOH A 172 504 178 HOH HOH . K 5 HOH A 173 505 179 HOH HOH . K 5 HOH A 174 506 180 HOH HOH . K 5 HOH A 175 507 181 HOH HOH . K 5 HOH A 176 508 182 HOH HOH . K 5 HOH A 177 509 183 HOH HOH . K 5 HOH A 178 510 184 HOH HOH . K 5 HOH A 179 511 185 HOH HOH . K 5 HOH A 180 512 186 HOH HOH . K 5 HOH A 181 513 187 HOH HOH . K 5 HOH A 182 514 188 HOH HOH . K 5 HOH A 183 515 190 HOH HOH . K 5 HOH A 184 516 191 HOH HOH . K 5 HOH A 185 517 192 HOH HOH . K 5 HOH A 186 518 194 HOH HOH . K 5 HOH A 187 519 195 HOH HOH . K 5 HOH A 188 520 196 HOH HOH . K 5 HOH A 189 521 197 HOH HOH . K 5 HOH A 190 522 198 HOH HOH . K 5 HOH A 191 523 199 HOH HOH . K 5 HOH A 192 524 200 HOH HOH . K 5 HOH A 193 525 201 HOH HOH . K 5 HOH A 194 526 202 HOH HOH . K 5 HOH A 195 527 203 HOH HOH . K 5 HOH A 196 528 204 HOH HOH . K 5 HOH A 197 529 205 HOH HOH . K 5 HOH A 198 530 206 HOH HOH . K 5 HOH A 199 531 207 HOH HOH . K 5 HOH A 200 532 208 HOH HOH . K 5 HOH A 201 533 209 HOH HOH . K 5 HOH A 202 534 210 HOH HOH . K 5 HOH A 203 535 211 HOH HOH . K 5 HOH A 204 536 212 HOH HOH . K 5 HOH A 205 537 213 HOH HOH . K 5 HOH A 206 538 214 HOH HOH . K 5 HOH A 207 539 215 HOH HOH . K 5 HOH A 208 540 216 HOH HOH . K 5 HOH A 209 541 217 HOH HOH . K 5 HOH A 210 542 218 HOH HOH . K 5 HOH A 211 543 220 HOH HOH . K 5 HOH A 212 544 221 HOH HOH . K 5 HOH A 213 545 222 HOH HOH . K 5 HOH A 214 546 223 HOH HOH . K 5 HOH A 215 547 224 HOH HOH . K 5 HOH A 216 548 227 HOH HOH . K 5 HOH A 217 549 228 HOH HOH . K 5 HOH A 218 550 229 HOH HOH . K 5 HOH A 219 551 230 HOH HOH . K 5 HOH A 220 552 232 HOH HOH . K 5 HOH A 221 553 233 HOH HOH . K 5 HOH A 222 554 234 HOH HOH . K 5 HOH A 223 555 236 HOH HOH . K 5 HOH A 224 556 237 HOH HOH . K 5 HOH A 225 557 238 HOH HOH . K 5 HOH A 226 558 1 HOH HOH . K 5 HOH A 227 559 2 HOH HOH . K 5 HOH A 228 560 3 HOH HOH . K 5 HOH A 229 561 4 HOH HOH . K 5 HOH A 230 562 5 HOH HOH . K 5 HOH A 231 563 6 HOH HOH . K 5 HOH A 232 564 7 HOH HOH . K 5 HOH A 233 565 8 HOH HOH . K 5 HOH A 234 566 9 HOH HOH . K 5 HOH A 235 567 10 HOH HOH . K 5 HOH A 236 568 13 HOH HOH . K 5 HOH A 237 569 15 HOH HOH . K 5 HOH A 238 570 1 HOH HOH . K 5 HOH A 239 571 2 HOH HOH . K 5 HOH A 240 572 3 HOH HOH . K 5 HOH A 241 573 4 HOH HOH . K 5 HOH A 242 574 5 HOH HOH . K 5 HOH A 243 575 6 HOH HOH . K 5 HOH A 244 576 7 HOH HOH . K 5 HOH A 245 577 8 HOH HOH . K 5 HOH A 246 578 9 HOH HOH . K 5 HOH A 247 579 10 HOH HOH . K 5 HOH A 248 580 11 HOH HOH . K 5 HOH A 249 581 12 HOH HOH . K 5 HOH A 250 582 13 HOH HOH . K 5 HOH A 251 583 14 HOH HOH . K 5 HOH A 252 584 1 HOH HOH . K 5 HOH A 253 585 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -71.23 32.632 9.68 0.7 37.42 ? C1 GOL 328 A 1 HETATM 2 O O1 GOL . . . H 4 -72.446 32.224 10.265 0.7 37.29 ? O1 GOL 328 A 1 HETATM 3 C C2 GOL . . . H 4 -71.33 32.509 8.164 0.7 37.39 ? C2 GOL 328 A 1 HETATM 4 O O2 GOL . . . H 4 -71.663 31.185 7.806 0.7 37.41 ? O2 GOL 328 A 1 HETATM 5 C C3 GOL . . . H 4 -70.014 32.916 7.507 0.7 37.16 ? C3 GOL 328 A 1 HETATM 6 O O3 GOL . . . H 4 -69.048 31.901 7.676 0.7 36.95 ? O3 GOL 328 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #