data_3QO7 # _model_server_result.job_id WozV6t0flFwim4rWT0XyPg _model_server_result.datetime_utc '2024-11-05 00:27:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qo7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":486}' # _entry.id 3QO7 # _exptl.entry_id 3QO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QO7 _cell.length_a 91.152 _cell.length_b 91.152 _cell.length_c 275.839 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 45.973167 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3QO7 _atom_sites.fract_transf_matrix[1][1] 0.010971 _atom_sites.fract_transf_matrix[1][2] 0.006334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 486 1 ATP ATP . C 3 HOH A 1 487 1 HOH HOH . C 3 HOH A 2 488 2 HOH HOH . C 3 HOH A 3 489 3 HOH HOH . C 3 HOH A 4 490 4 HOH HOH . C 3 HOH A 5 491 5 HOH HOH . C 3 HOH A 6 492 6 HOH HOH . C 3 HOH A 7 493 7 HOH HOH . C 3 HOH A 8 494 8 HOH HOH . C 3 HOH A 9 495 9 HOH HOH . C 3 HOH A 10 496 10 HOH HOH . C 3 HOH A 11 497 11 HOH HOH . C 3 HOH A 12 498 12 HOH HOH . C 3 HOH A 13 499 13 HOH HOH . C 3 HOH A 14 500 14 HOH HOH . C 3 HOH A 15 501 15 HOH HOH . C 3 HOH A 16 502 16 HOH HOH . C 3 HOH A 17 503 17 HOH HOH . C 3 HOH A 18 504 18 HOH HOH . C 3 HOH A 19 505 19 HOH HOH . C 3 HOH A 20 506 20 HOH HOH . C 3 HOH A 21 507 21 HOH HOH . C 3 HOH A 22 508 22 HOH HOH . C 3 HOH A 23 509 23 HOH HOH . C 3 HOH A 24 510 25 HOH HOH . C 3 HOH A 25 511 26 HOH HOH . C 3 HOH A 26 512 27 HOH HOH . C 3 HOH A 27 513 28 HOH HOH . C 3 HOH A 28 514 29 HOH HOH . C 3 HOH A 29 515 30 HOH HOH . C 3 HOH A 30 516 32 HOH HOH . C 3 HOH A 31 517 33 HOH HOH . C 3 HOH A 32 518 34 HOH HOH . C 3 HOH A 33 519 35 HOH HOH . C 3 HOH A 34 520 36 HOH HOH . C 3 HOH A 35 521 37 HOH HOH . C 3 HOH A 36 522 38 HOH HOH . C 3 HOH A 37 523 39 HOH HOH . C 3 HOH A 38 524 40 HOH HOH . C 3 HOH A 39 525 41 HOH HOH . C 3 HOH A 40 526 43 HOH HOH . C 3 HOH A 41 527 44 HOH HOH . C 3 HOH A 42 528 45 HOH HOH . C 3 HOH A 43 529 46 HOH HOH . C 3 HOH A 44 530 47 HOH HOH . C 3 HOH A 45 531 48 HOH HOH . C 3 HOH A 46 532 49 HOH HOH . C 3 HOH A 47 533 50 HOH HOH . C 3 HOH A 48 534 52 HOH HOH . C 3 HOH A 49 535 53 HOH HOH . C 3 HOH A 50 536 54 HOH HOH . C 3 HOH A 51 537 55 HOH HOH . C 3 HOH A 52 538 56 HOH HOH . C 3 HOH A 53 539 58 HOH HOH . C 3 HOH A 54 540 59 HOH HOH . C 3 HOH A 55 541 61 HOH HOH . C 3 HOH A 56 542 63 HOH HOH . C 3 HOH A 57 543 65 HOH HOH . C 3 HOH A 58 544 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -13.281 -23.06 6.196 0.5 108.21 ? PG ATP 486 A 1 HETATM 2 O O1G ATP . . . B 2 -11.771 -23.015 6.251 0.5 107.27 ? O1G ATP 486 A 1 HETATM 3 O O2G ATP . . . B 2 -13.952 -21.751 6.558 0.5 108.51 ? O2G ATP 486 A 1 HETATM 4 O O3G ATP . . . B 2 -13.814 -23.71 4.941 0.5 106.21 ? O3G ATP 486 A 1 HETATM 5 P PB ATP . . . B 2 -13.137 -23.93 8.859 0.5 65.03 ? PB ATP 486 A 1 HETATM 6 O O1B ATP . . . B 2 -12.193 -22.749 8.901 0.5 65.82 ? O1B ATP 486 A 1 HETATM 7 O O2B ATP . . . B 2 -12.693 -25.269 9.385 0.5 65.63 ? O2B ATP 486 A 1 HETATM 8 O O3B ATP . . . B 2 -13.73 -24.077 7.377 0.5 43.72 ? O3B ATP 486 A 1 HETATM 9 P PA ATP . . . B 2 -14.62 -22.368 10.674 0.5 41.66 ? PA ATP 486 A 1 HETATM 10 O O1A ATP . . . B 2 -13.702 -21.235 10.242 0.5 37.67 ? O1A ATP 486 A 1 HETATM 11 O O2A ATP . . . B 2 -14.517 -22.982 12.053 0.5 41.6 ? O2A ATP 486 A 1 HETATM 12 O O3A ATP . . . B 2 -14.491 -23.581 9.631 0.5 108.82 ? O3A ATP 486 A 1 HETATM 13 O O5' ATP . . . B 2 -16.147 -22.085 10.244 0.5 28.32 ? O5' ATP 486 A 1 HETATM 14 C C5' ATP . . . B 2 -17.021 -23.215 10.184 0.5 28.72 ? C5' ATP 486 A 1 HETATM 15 C C4' ATP . . . B 2 -18.433 -22.693 10.073 0.5 32.58 ? C4' ATP 486 A 1 HETATM 16 O O4' ATP . . . B 2 -18.535 -21.423 10.735 0.5 35.33 ? O4' ATP 486 A 1 HETATM 17 C C3' ATP . . . B 2 -18.712 -22.421 8.627 0.5 38.85 ? C3' ATP 486 A 1 HETATM 18 O O3' ATP . . . B 2 -19.378 -23.561 8.083 0.5 41.7 ? O3' ATP 486 A 1 HETATM 19 C C2' ATP . . . B 2 -19.563 -21.166 8.628 0.5 39.99 ? C2' ATP 486 A 1 HETATM 20 O O2' ATP . . . B 2 -20.94 -21.553 8.596 0.5 43.09 ? O2' ATP 486 A 1 HETATM 21 C C1' ATP . . . B 2 -19.275 -20.481 9.955 0.5 35.33 ? C1' ATP 486 A 1 HETATM 22 N N9 ATP . . . B 2 -18.497 -19.223 9.746 0.5 33.1 ? N9 ATP 486 A 1 HETATM 23 C C8 ATP . . . B 2 -17.163 -19.155 9.572 0.5 31.76 ? C8 ATP 486 A 1 HETATM 24 N N7 ATP . . . B 2 -16.753 -17.868 9.406 0.5 31.38 ? N7 ATP 486 A 1 HETATM 25 C C5 ATP . . . B 2 -17.843 -17.077 9.466 0.5 30.36 ? C5 ATP 486 A 1 HETATM 26 C C6 ATP . . . B 2 -18.113 -15.621 9.369 0.5 26.51 ? C6 ATP 486 A 1 HETATM 27 N N6 ATP . . . B 2 -17.094 -14.744 9.17 0.5 26.1 ? N6 ATP 486 A 1 HETATM 28 N N1 ATP . . . B 2 -19.388 -15.196 9.491 0.5 23.09 ? N1 ATP 486 A 1 HETATM 29 C C2 ATP . . . B 2 -20.399 -16.055 9.699 0.5 26.47 ? C2 ATP 486 A 1 HETATM 30 N N3 ATP . . . B 2 -20.221 -17.39 9.803 0.5 29.63 ? N3 ATP 486 A 1 HETATM 31 C C4 ATP . . . B 2 -18.991 -17.966 9.694 0.5 31.59 ? C4 ATP 486 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #