data_3QOA # _model_server_result.job_id wJ2PUJEbZHmydTLWqF1U7Q _model_server_result.datetime_utc '2024-11-14 20:13:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3QOA # _exptl.entry_id 3QOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.222 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-benzylpyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QOA _cell.length_a 76.76 _cell.length_b 76.76 _cell.length_c 201.341 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 B FE HEM . A HEM 500 1_555 E NAK 3QO . A 3QO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C12 H11 N' _chem_comp.formula_weight 169.222 _chem_comp.id 3QO _chem_comp.mon_nstd_flag . _chem_comp.name 4-benzylpyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAA 3QO doub 1 n y CAA CAC 3QO sing 2 n y CAA HAA 3QO sing 3 n n CAB CAF 3QO sing 4 n y CAB HAB 3QO sing 5 n n CAC CAG 3QO doub 6 n y CAC HAC 3QO sing 7 n n CAH CAD 3QO doub 8 n y CAD NAK 3QO sing 9 n y CAD HAD 3QO sing 10 n n CAI CAE 3QO sing 11 n y NAK CAE 3QO doub 12 n y CAE HAE 3QO sing 13 n n CAF CAL 3QO doub 14 n y CAF HAF 3QO sing 15 n n CAL CAG 3QO sing 16 n y CAG HAG 3QO sing 17 n n CAH CAM 3QO sing 18 n y CAH HAH 3QO sing 19 n n CAM CAI 3QO doub 20 n y CAI HAI 3QO sing 21 n n CAL CAJ 3QO sing 22 n n CAJ CAM 3QO sing 23 n n CAJ HAJ 3QO sing 24 n n CAJ HAJA 3QO sing 25 n n # _atom_sites.entry_id 3QOA _atom_sites.fract_transf_matrix[1][1] 0.013028 _atom_sites.fract_transf_matrix[1][2] 0.007522 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 CM5 A 1 604 604 CM5 CM5 . D 3 CM5 A 1 605 605 CM5 CM5 . E 4 3QO A 1 501 501 3QO 3QO . F 5 HOH A 1 3 3 HOH HOH . F 5 HOH A 2 4 4 HOH HOH . F 5 HOH A 3 5 5 HOH HOH . F 5 HOH A 4 6 6 HOH HOH . F 5 HOH A 5 7 7 HOH HOH . F 5 HOH A 6 8 8 HOH HOH . F 5 HOH A 7 9 9 HOH HOH . F 5 HOH A 8 10 10 HOH HOH . F 5 HOH A 9 11 11 HOH HOH . F 5 HOH A 10 12 12 HOH HOH . F 5 HOH A 11 13 13 HOH HOH . F 5 HOH A 12 14 14 HOH HOH . F 5 HOH A 13 15 15 HOH HOH . F 5 HOH A 14 16 16 HOH HOH . F 5 HOH A 15 17 17 HOH HOH . F 5 HOH A 16 18 18 HOH HOH . F 5 HOH A 17 19 19 HOH HOH . F 5 HOH A 18 496 20 HOH HOH . F 5 HOH A 19 497 21 HOH HOH . F 5 HOH A 20 498 22 HOH HOH . F 5 HOH A 21 499 23 HOH HOH . F 5 HOH A 22 502 24 HOH HOH . F 5 HOH A 23 503 25 HOH HOH . F 5 HOH A 24 504 26 HOH HOH . F 5 HOH A 25 505 27 HOH HOH . F 5 HOH A 26 506 28 HOH HOH . F 5 HOH A 27 507 29 HOH HOH . F 5 HOH A 28 508 30 HOH HOH . F 5 HOH A 29 509 31 HOH HOH . F 5 HOH A 30 510 32 HOH HOH . F 5 HOH A 31 511 33 HOH HOH . F 5 HOH A 32 512 34 HOH HOH . F 5 HOH A 33 513 35 HOH HOH . F 5 HOH A 34 514 36 HOH HOH . F 5 HOH A 35 515 37 HOH HOH . F 5 HOH A 36 516 38 HOH HOH . F 5 HOH A 37 517 39 HOH HOH . F 5 HOH A 38 518 40 HOH HOH . F 5 HOH A 39 519 41 HOH HOH . F 5 HOH A 40 520 42 HOH HOH . F 5 HOH A 41 521 43 HOH HOH . F 5 HOH A 42 522 44 HOH HOH . F 5 HOH A 43 523 45 HOH HOH . F 5 HOH A 44 524 46 HOH HOH . F 5 HOH A 45 525 47 HOH HOH . F 5 HOH A 46 526 48 HOH HOH . F 5 HOH A 47 527 49 HOH HOH . F 5 HOH A 48 528 50 HOH HOH . F 5 HOH A 49 529 51 HOH HOH . F 5 HOH A 50 530 52 HOH HOH . F 5 HOH A 51 531 53 HOH HOH . F 5 HOH A 52 532 54 HOH HOH . F 5 HOH A 53 533 55 HOH HOH . F 5 HOH A 54 534 56 HOH HOH . F 5 HOH A 55 535 57 HOH HOH . F 5 HOH A 56 536 58 HOH HOH . F 5 HOH A 57 537 59 HOH HOH . F 5 HOH A 58 538 60 HOH HOH . F 5 HOH A 59 539 61 HOH HOH . F 5 HOH A 60 540 62 HOH HOH . F 5 HOH A 61 541 63 HOH HOH . F 5 HOH A 62 542 64 HOH HOH . F 5 HOH A 63 543 65 HOH HOH . F 5 HOH A 64 544 66 HOH HOH . F 5 HOH A 65 545 67 HOH HOH . F 5 HOH A 66 546 68 HOH HOH . F 5 HOH A 67 547 69 HOH HOH . F 5 HOH A 68 548 70 HOH HOH . F 5 HOH A 69 549 71 HOH HOH . F 5 HOH A 70 550 72 HOH HOH . F 5 HOH A 71 551 73 HOH HOH . F 5 HOH A 72 552 74 HOH HOH . F 5 HOH A 73 553 75 HOH HOH . F 5 HOH A 74 554 76 HOH HOH . F 5 HOH A 75 555 77 HOH HOH . F 5 HOH A 76 556 78 HOH HOH . F 5 HOH A 77 557 79 HOH HOH . F 5 HOH A 78 558 80 HOH HOH . F 5 HOH A 79 559 81 HOH HOH . F 5 HOH A 80 560 82 HOH HOH . F 5 HOH A 81 561 83 HOH HOH . F 5 HOH A 82 562 84 HOH HOH . F 5 HOH A 83 563 85 HOH HOH . F 5 HOH A 84 564 86 HOH HOH . F 5 HOH A 85 565 87 HOH HOH . F 5 HOH A 86 566 88 HOH HOH . F 5 HOH A 87 567 89 HOH HOH . F 5 HOH A 88 568 90 HOH HOH . F 5 HOH A 89 569 91 HOH HOH . F 5 HOH A 90 570 92 HOH HOH . F 5 HOH A 91 571 93 HOH HOH . F 5 HOH A 92 572 94 HOH HOH . F 5 HOH A 93 573 95 HOH HOH . F 5 HOH A 94 574 96 HOH HOH . F 5 HOH A 95 575 97 HOH HOH . F 5 HOH A 96 576 98 HOH HOH . F 5 HOH A 97 577 99 HOH HOH . F 5 HOH A 98 578 100 HOH HOH . F 5 HOH A 99 579 101 HOH HOH . F 5 HOH A 100 580 102 HOH HOH . F 5 HOH A 101 581 103 HOH HOH . F 5 HOH A 102 582 104 HOH HOH . F 5 HOH A 103 583 105 HOH HOH . F 5 HOH A 104 584 106 HOH HOH . F 5 HOH A 105 585 107 HOH HOH . F 5 HOH A 106 586 108 HOH HOH . F 5 HOH A 107 587 109 HOH HOH . F 5 HOH A 108 588 110 HOH HOH . F 5 HOH A 109 589 111 HOH HOH . F 5 HOH A 110 590 112 HOH HOH . F 5 HOH A 111 591 113 HOH HOH . F 5 HOH A 112 592 114 HOH HOH . F 5 HOH A 113 593 115 HOH HOH . F 5 HOH A 114 594 116 HOH HOH . F 5 HOH A 115 595 117 HOH HOH . F 5 HOH A 116 596 118 HOH HOH . F 5 HOH A 117 597 119 HOH HOH . F 5 HOH A 118 598 120 HOH HOH . F 5 HOH A 119 599 121 HOH HOH . F 5 HOH A 120 600 122 HOH HOH . F 5 HOH A 121 601 123 HOH HOH . F 5 HOH A 122 602 124 HOH HOH . F 5 HOH A 123 603 125 HOH HOH . F 5 HOH A 124 606 126 HOH HOH . F 5 HOH A 125 607 127 HOH HOH . F 5 HOH A 126 608 128 HOH HOH . F 5 HOH A 127 609 129 HOH HOH . F 5 HOH A 128 610 130 HOH HOH . F 5 HOH A 129 611 131 HOH HOH . F 5 HOH A 130 612 132 HOH HOH . F 5 HOH A 131 613 133 HOH HOH . F 5 HOH A 132 614 134 HOH HOH . F 5 HOH A 133 615 135 HOH HOH . F 5 HOH A 134 616 136 HOH HOH . F 5 HOH A 135 617 137 HOH HOH . F 5 HOH A 136 618 138 HOH HOH . F 5 HOH A 137 619 139 HOH HOH . F 5 HOH A 138 620 140 HOH HOH . F 5 HOH A 139 621 141 HOH HOH . F 5 HOH A 140 622 142 HOH HOH . F 5 HOH A 141 623 143 HOH HOH . F 5 HOH A 142 624 144 HOH HOH . F 5 HOH A 143 625 145 HOH HOH . F 5 HOH A 144 626 146 HOH HOH . F 5 HOH A 145 627 147 HOH HOH . F 5 HOH A 146 628 148 HOH HOH . F 5 HOH A 147 629 149 HOH HOH . F 5 HOH A 148 630 150 HOH HOH . F 5 HOH A 149 631 151 HOH HOH . F 5 HOH A 150 632 152 HOH HOH . F 5 HOH A 151 633 153 HOH HOH . F 5 HOH A 152 634 154 HOH HOH . F 5 HOH A 153 635 155 HOH HOH . F 5 HOH A 154 636 156 HOH HOH . F 5 HOH A 155 637 157 HOH HOH . F 5 HOH A 156 638 158 HOH HOH . F 5 HOH A 157 639 159 HOH HOH . F 5 HOH A 158 640 160 HOH HOH . F 5 HOH A 159 641 161 HOH HOH . F 5 HOH A 160 642 162 HOH HOH . F 5 HOH A 161 643 163 HOH HOH . F 5 HOH A 162 644 164 HOH HOH . F 5 HOH A 163 645 165 HOH HOH . F 5 HOH A 164 646 166 HOH HOH . F 5 HOH A 165 647 167 HOH HOH . F 5 HOH A 166 648 168 HOH HOH . F 5 HOH A 167 649 169 HOH HOH . F 5 HOH A 168 650 170 HOH HOH . F 5 HOH A 169 651 171 HOH HOH . F 5 HOH A 170 652 172 HOH HOH . F 5 HOH A 171 653 173 HOH HOH . F 5 HOH A 172 654 174 HOH HOH . F 5 HOH A 173 655 175 HOH HOH . F 5 HOH A 174 656 176 HOH HOH . F 5 HOH A 175 657 177 HOH HOH . F 5 HOH A 176 658 178 HOH HOH . F 5 HOH A 177 659 179 HOH HOH . F 5 HOH A 178 660 180 HOH HOH . F 5 HOH A 179 661 181 HOH HOH . F 5 HOH A 180 662 182 HOH HOH . F 5 HOH A 181 663 183 HOH HOH . F 5 HOH A 182 664 184 HOH HOH . F 5 HOH A 183 665 185 HOH HOH . F 5 HOH A 184 666 186 HOH HOH . F 5 HOH A 185 667 187 HOH HOH . F 5 HOH A 186 668 188 HOH HOH . F 5 HOH A 187 669 189 HOH HOH . F 5 HOH A 188 670 190 HOH HOH . F 5 HOH A 189 671 191 HOH HOH . F 5 HOH A 190 672 192 HOH HOH . F 5 HOH A 191 673 193 HOH HOH . F 5 HOH A 192 674 194 HOH HOH . F 5 HOH A 193 675 195 HOH HOH . F 5 HOH A 194 676 196 HOH HOH . F 5 HOH A 195 677 197 HOH HOH . F 5 HOH A 196 678 198 HOH HOH . F 5 HOH A 197 679 199 HOH HOH . F 5 HOH A 198 680 200 HOH HOH . F 5 HOH A 199 681 201 HOH HOH . F 5 HOH A 200 682 202 HOH HOH . F 5 HOH A 201 683 203 HOH HOH . F 5 HOH A 202 684 204 HOH HOH . F 5 HOH A 203 685 205 HOH HOH . F 5 HOH A 204 686 206 HOH HOH . F 5 HOH A 205 687 207 HOH HOH . F 5 HOH A 206 688 208 HOH HOH . F 5 HOH A 207 689 209 HOH HOH . F 5 HOH A 208 690 210 HOH HOH . F 5 HOH A 209 691 211 HOH HOH . F 5 HOH A 210 692 212 HOH HOH . F 5 HOH A 211 693 213 HOH HOH . F 5 HOH A 212 694 214 HOH HOH . F 5 HOH A 213 695 215 HOH HOH . F 5 HOH A 214 696 216 HOH HOH . F 5 HOH A 215 697 217 HOH HOH . F 5 HOH A 216 698 218 HOH HOH . F 5 HOH A 217 699 219 HOH HOH . F 5 HOH A 218 700 220 HOH HOH . F 5 HOH A 219 701 221 HOH HOH . F 5 HOH A 220 702 222 HOH HOH . F 5 HOH A 221 703 223 HOH HOH . F 5 HOH A 222 704 224 HOH HOH . F 5 HOH A 223 705 225 HOH HOH . F 5 HOH A 224 706 226 HOH HOH . F 5 HOH A 225 707 227 HOH HOH . F 5 HOH A 226 708 228 HOH HOH . F 5 HOH A 227 709 229 HOH HOH . F 5 HOH A 228 710 230 HOH HOH . F 5 HOH A 229 711 231 HOH HOH . F 5 HOH A 230 712 232 HOH HOH . F 5 HOH A 231 713 233 HOH HOH . F 5 HOH A 232 714 234 HOH HOH . F 5 HOH A 233 715 235 HOH HOH . F 5 HOH A 234 716 236 HOH HOH . F 5 HOH A 235 717 237 HOH HOH . F 5 HOH A 236 718 238 HOH HOH . F 5 HOH A 237 719 239 HOH HOH . F 5 HOH A 238 720 240 HOH HOH . F 5 HOH A 239 721 241 HOH HOH . F 5 HOH A 240 722 242 HOH HOH . F 5 HOH A 241 723 243 HOH HOH . F 5 HOH A 242 724 244 HOH HOH . F 5 HOH A 243 725 245 HOH HOH . F 5 HOH A 244 726 246 HOH HOH . F 5 HOH A 245 727 247 HOH HOH . F 5 HOH A 246 728 248 HOH HOH . F 5 HOH A 247 729 249 HOH HOH . F 5 HOH A 248 730 250 HOH HOH . F 5 HOH A 249 731 1 HOH HOH . F 5 HOH A 250 732 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3QO . . . E 4 -41.293 17.139 -25.238 1 32.55 ? CAA 3QO 501 A 1 HETATM 2 C CAB 3QO . . . E 4 -41.298 15.952 -25.922 1 32.99 ? CAB 3QO 501 A 1 HETATM 3 C CAC 3QO . . . E 4 -41.461 17.149 -23.865 1 33.37 ? CAC 3QO 501 A 1 HETATM 4 C CAD 3QO . . . E 4 -45.218 13.56 -21.807 1 33.8 ? CAD 3QO 501 A 1 HETATM 5 C CAE 3QO . . . E 4 -43.773 13.209 -20.092 1 34.2 ? CAE 3QO 501 A 1 HETATM 6 C CAF 3QO . . . E 4 -41.488 14.761 -25.225 1 34.62 ? CAF 3QO 501 A 1 HETATM 7 C CAG 3QO . . . E 4 -41.618 15.959 -23.188 1 33.05 ? CAG 3QO 501 A 1 HETATM 8 C CAH 3QO . . . E 4 -44.203 13.6 -22.709 1 31.34 ? CAH 3QO 501 A 1 HETATM 9 C CAI 3QO . . . E 4 -42.712 13.272 -20.941 1 31.54 ? CAI 3QO 501 A 1 HETATM 10 C CAJ 3QO . . . E 4 -41.797 13.491 -23.165 1 33.33 ? CAJ 3QO 501 A 1 HETATM 11 N NAK 3QO . . . E 4 -44.968 13.363 -20.564 1 35.75 ? NAK 3QO 501 A 1 HETATM 12 C CAL 3QO . . . E 4 -41.649 14.784 -23.861 1 30.64 ? CAL 3QO 501 A 1 HETATM 13 C CAM 3QO . . . E 4 -42.944 13.461 -22.243 1 31.53 ? CAM 3QO 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #