data_3QOK # _model_server_result.job_id um8GfQaIgPHm8hcH3unOqw _model_server_result.datetime_utc '2024-10-19 16:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":420}' # _entry.id 3QOK # _exptl.entry_id 3QOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QOK _cell.length_a 92.341 _cell.length_b 110.672 _cell.length_c 108.481 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 26 A LEU 23 1_555 A N MSE 27 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 27 A MSE 24 1_555 A N SER 28 A SER 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LEU 222 A LEU 219 1_555 A N MSE 223 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 223 A MSE 220 1_555 A N THR 224 A THR 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C ASP 226 A ASP 223 1_555 A N MSE 227 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 227 A MSE 224 1_555 A N ALA 228 A ALA 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 A C GLN 271 A GLN 268 1_555 A N MSE 272 A MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C MSE 272 A MSE 269 1_555 A N ASN 273 A ASN 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C ALA 395 A ALA 392 1_555 A N MSE 396 A MSE 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C MSE 396 A MSE 393 1_555 A N PHE 397 A PHE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3QOK _atom_sites.fract_transf_matrix[1][1] 0.010829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 418 1 GOL GOL . C 2 GOL A 1 419 1 GOL GOL . D 2 GOL A 1 420 1 GOL GOL . E 3 HOH A 1 421 1 HOH HOH . E 3 HOH A 2 422 2 HOH HOH . E 3 HOH A 3 423 3 HOH HOH . E 3 HOH A 4 424 4 HOH HOH . E 3 HOH A 5 425 5 HOH HOH . E 3 HOH A 6 426 6 HOH HOH . E 3 HOH A 7 427 7 HOH HOH . E 3 HOH A 8 428 8 HOH HOH . E 3 HOH A 9 429 9 HOH HOH . E 3 HOH A 10 430 10 HOH HOH . E 3 HOH A 11 431 11 HOH HOH . E 3 HOH A 12 432 12 HOH HOH . E 3 HOH A 13 433 13 HOH HOH . E 3 HOH A 14 434 14 HOH HOH . E 3 HOH A 15 435 15 HOH HOH . E 3 HOH A 16 436 16 HOH HOH . E 3 HOH A 17 437 17 HOH HOH . E 3 HOH A 18 438 18 HOH HOH . E 3 HOH A 19 439 19 HOH HOH . E 3 HOH A 20 440 20 HOH HOH . E 3 HOH A 21 441 21 HOH HOH . E 3 HOH A 22 442 22 HOH HOH . E 3 HOH A 23 443 23 HOH HOH . E 3 HOH A 24 444 24 HOH HOH . E 3 HOH A 25 445 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -1.538 18.208 28.503 1 71.68 ? C1 GOL 420 A 1 HETATM 2 O O1 GOL . . . D 2 -2.223 18.17 27.277 1 71.13 ? O1 GOL 420 A 1 HETATM 3 C C2 GOL . . . D 2 -2.549 18.031 29.637 1 72 ? C2 GOL 420 A 1 HETATM 4 O O2 GOL . . . D 2 -2.341 19.035 30.612 1 69.83 ? O2 GOL 420 A 1 HETATM 5 C C3 GOL . . . D 2 -2.458 16.62 30.226 1 73.26 ? C3 GOL 420 A 1 HETATM 6 O O3 GOL . . . D 2 -2.059 16.654 31.582 1 74.62 ? O3 GOL 420 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #