data_3QOW # _model_server_result.job_id Mt8F-scxihrtTgv5FCe31g _model_server_result.datetime_utc '2024-11-29 13:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":417}' # _entry.id 3QOW # _exptl.entry_id 3QOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QOW _cell.length_a 153.204 _cell.length_b 153.204 _cell.length_c 51.314 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 3QOW _atom_sites.fract_transf_matrix[1][1] 0.006527 _atom_sites.fract_transf_matrix[1][2] 0.003769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 417 1 SAM SAM . C 3 SO4 A 1 418 1 SO4 SO4 . D 3 SO4 A 1 419 2 SO4 SO4 . E 4 HOH A 1 420 1 HOH HOH . E 4 HOH A 2 421 2 HOH HOH . E 4 HOH A 3 422 3 HOH HOH . E 4 HOH A 4 423 4 HOH HOH . E 4 HOH A 5 424 5 HOH HOH . E 4 HOH A 6 425 6 HOH HOH . E 4 HOH A 7 426 7 HOH HOH . E 4 HOH A 8 427 8 HOH HOH . E 4 HOH A 9 428 9 HOH HOH . E 4 HOH A 10 429 10 HOH HOH . E 4 HOH A 11 430 11 HOH HOH . E 4 HOH A 12 431 12 HOH HOH . E 4 HOH A 13 432 13 HOH HOH . E 4 HOH A 14 433 14 HOH HOH . E 4 HOH A 15 434 15 HOH HOH . E 4 HOH A 16 435 16 HOH HOH . E 4 HOH A 17 436 17 HOH HOH . E 4 HOH A 18 437 18 HOH HOH . E 4 HOH A 19 438 19 HOH HOH . E 4 HOH A 20 439 20 HOH HOH . E 4 HOH A 21 440 21 HOH HOH . E 4 HOH A 22 441 22 HOH HOH . E 4 HOH A 23 442 23 HOH HOH . E 4 HOH A 24 443 24 HOH HOH . E 4 HOH A 25 444 25 HOH HOH . E 4 HOH A 26 445 26 HOH HOH . E 4 HOH A 27 446 27 HOH HOH . E 4 HOH A 28 447 28 HOH HOH . E 4 HOH A 29 448 29 HOH HOH . E 4 HOH A 30 449 30 HOH HOH . E 4 HOH A 31 450 31 HOH HOH . E 4 HOH A 32 451 32 HOH HOH . E 4 HOH A 33 452 33 HOH HOH . E 4 HOH A 34 453 34 HOH HOH . E 4 HOH A 35 454 35 HOH HOH . E 4 HOH A 36 455 36 HOH HOH . E 4 HOH A 37 456 37 HOH HOH . E 4 HOH A 38 457 38 HOH HOH . E 4 HOH A 39 458 39 HOH HOH . E 4 HOH A 40 459 40 HOH HOH . E 4 HOH A 41 460 41 HOH HOH . E 4 HOH A 42 461 42 HOH HOH . E 4 HOH A 43 462 43 HOH HOH . E 4 HOH A 44 463 44 HOH HOH . E 4 HOH A 45 464 45 HOH HOH . E 4 HOH A 46 465 46 HOH HOH . E 4 HOH A 47 466 47 HOH HOH . E 4 HOH A 48 467 48 HOH HOH . E 4 HOH A 49 468 49 HOH HOH . E 4 HOH A 50 469 50 HOH HOH . E 4 HOH A 51 470 51 HOH HOH . E 4 HOH A 52 471 52 HOH HOH . E 4 HOH A 53 472 53 HOH HOH . E 4 HOH A 54 473 54 HOH HOH . E 4 HOH A 55 474 55 HOH HOH . E 4 HOH A 56 475 56 HOH HOH . E 4 HOH A 57 476 57 HOH HOH . E 4 HOH A 58 477 58 HOH HOH . E 4 HOH A 59 478 59 HOH HOH . E 4 HOH A 60 479 60 HOH HOH . E 4 HOH A 61 480 61 HOH HOH . E 4 HOH A 62 481 62 HOH HOH . E 4 HOH A 63 482 63 HOH HOH . E 4 HOH A 64 483 64 HOH HOH . E 4 HOH A 65 484 65 HOH HOH . E 4 HOH A 66 485 66 HOH HOH . E 4 HOH A 67 486 67 HOH HOH . E 4 HOH A 68 487 68 HOH HOH . E 4 HOH A 69 488 69 HOH HOH . E 4 HOH A 70 489 70 HOH HOH . E 4 HOH A 71 490 71 HOH HOH . E 4 HOH A 72 491 72 HOH HOH . E 4 HOH A 73 492 73 HOH HOH . E 4 HOH A 74 493 74 HOH HOH . E 4 HOH A 75 494 75 HOH HOH . E 4 HOH A 76 495 76 HOH HOH . E 4 HOH A 77 496 77 HOH HOH . E 4 HOH A 78 497 78 HOH HOH . E 4 HOH A 79 498 79 HOH HOH . E 4 HOH A 80 499 80 HOH HOH . E 4 HOH A 81 500 81 HOH HOH . E 4 HOH A 82 501 82 HOH HOH . E 4 HOH A 83 502 83 HOH HOH . E 4 HOH A 84 503 84 HOH HOH . E 4 HOH A 85 504 85 HOH HOH . E 4 HOH A 86 505 86 HOH HOH . E 4 HOH A 87 506 87 HOH HOH . E 4 HOH A 88 507 88 HOH HOH . E 4 HOH A 89 508 89 HOH HOH . E 4 HOH A 90 509 90 HOH HOH . E 4 HOH A 91 510 91 HOH HOH . E 4 HOH A 92 511 92 HOH HOH . E 4 HOH A 93 512 93 HOH HOH . E 4 HOH A 94 513 94 HOH HOH . E 4 HOH A 95 514 95 HOH HOH . E 4 HOH A 96 515 96 HOH HOH . E 4 HOH A 97 516 97 HOH HOH . E 4 HOH A 98 517 98 HOH HOH . E 4 HOH A 99 518 99 HOH HOH . E 4 HOH A 100 519 100 HOH HOH . E 4 HOH A 101 520 101 HOH HOH . E 4 HOH A 102 521 102 HOH HOH . E 4 HOH A 103 522 103 HOH HOH . E 4 HOH A 104 523 104 HOH HOH . E 4 HOH A 105 524 105 HOH HOH . E 4 HOH A 106 525 106 HOH HOH . E 4 HOH A 107 526 107 HOH HOH . E 4 HOH A 108 527 108 HOH HOH . E 4 HOH A 109 528 109 HOH HOH . E 4 HOH A 110 529 110 HOH HOH . E 4 HOH A 111 530 111 HOH HOH . E 4 HOH A 112 531 112 HOH HOH . E 4 HOH A 113 532 113 HOH HOH . E 4 HOH A 114 533 114 HOH HOH . E 4 HOH A 115 534 115 HOH HOH . E 4 HOH A 116 535 116 HOH HOH . E 4 HOH A 117 536 117 HOH HOH . E 4 HOH A 118 537 118 HOH HOH . E 4 HOH A 119 538 119 HOH HOH . E 4 HOH A 120 539 120 HOH HOH . E 4 HOH A 121 540 121 HOH HOH . E 4 HOH A 122 541 122 HOH HOH . E 4 HOH A 123 542 123 HOH HOH . E 4 HOH A 124 543 124 HOH HOH . E 4 HOH A 125 544 125 HOH HOH . E 4 HOH A 126 545 126 HOH HOH . E 4 HOH A 127 546 127 HOH HOH . E 4 HOH A 128 547 128 HOH HOH . E 4 HOH A 129 548 129 HOH HOH . E 4 HOH A 130 549 130 HOH HOH . E 4 HOH A 131 550 131 HOH HOH . E 4 HOH A 132 551 132 HOH HOH . E 4 HOH A 133 552 133 HOH HOH . E 4 HOH A 134 553 134 HOH HOH . E 4 HOH A 135 554 135 HOH HOH . E 4 HOH A 136 555 136 HOH HOH . E 4 HOH A 137 556 137 HOH HOH . E 4 HOH A 138 557 138 HOH HOH . E 4 HOH A 139 558 139 HOH HOH . E 4 HOH A 140 559 140 HOH HOH . E 4 HOH A 141 560 141 HOH HOH . E 4 HOH A 142 561 142 HOH HOH . E 4 HOH A 143 562 143 HOH HOH . E 4 HOH A 144 563 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 23.564 62.164 -3.272 1 28.4 ? N SAM 417 A 1 HETATM 2 C CA SAM . . . B 2 24.946 62.582 -3.671 1 28.57 ? CA SAM 417 A 1 HETATM 3 C C SAM . . . B 2 25.54 63.513 -2.605 1 28.92 ? C SAM 417 A 1 HETATM 4 O O SAM . . . B 2 24.794 64.234 -1.917 1 28.53 ? O SAM 417 A 1 HETATM 5 O OXT SAM . . . B 2 26.765 63.57 -2.414 1 27.74 ? OXT SAM 417 A 1 HETATM 6 C CB SAM . . . B 2 24.913 63.262 -5.047 1 29.13 ? CB SAM 417 A 1 HETATM 7 C CG SAM . . . B 2 23.919 64.439 -5.154 1 29.84 ? CG SAM 417 A 1 HETATM 8 S SD SAM . . . B 2 23.905 65.262 -6.767 1 32.12 ? SD SAM 417 A 1 HETATM 9 C CE SAM . . . B 2 23.872 67.034 -6.38 1 33.57 ? CE SAM 417 A 1 HETATM 10 C C5' SAM . . . B 2 22.191 65.028 -7.293 1 32.35 ? C5' SAM 417 A 1 HETATM 11 C C4' SAM . . . B 2 21.995 63.741 -8.077 1 31.74 ? C4' SAM 417 A 1 HETATM 12 O O4' SAM . . . B 2 20.595 63.533 -8.208 1 34.46 ? O4' SAM 417 A 1 HETATM 13 C C3' SAM . . . B 2 22.55 63.896 -9.486 1 31.87 ? C3' SAM 417 A 1 HETATM 14 O O3' SAM . . . B 2 23.625 63.012 -9.745 1 30 ? O3' SAM 417 A 1 HETATM 15 C C2' SAM . . . B 2 21.357 63.672 -10.408 1 30.57 ? C2' SAM 417 A 1 HETATM 16 O O2' SAM . . . B 2 21.665 62.824 -11.485 1 27.61 ? O2' SAM 417 A 1 HETATM 17 C C1' SAM . . . B 2 20.398 62.952 -9.48 1 32.92 ? C1' SAM 417 A 1 HETATM 18 N N9 SAM . . . B 2 18.997 62.959 -9.95 1 31.87 ? N9 SAM 417 A 1 HETATM 19 C C8 SAM . . . B 2 18.276 64.027 -10.427 1 33.23 ? C8 SAM 417 A 1 HETATM 20 N N7 SAM . . . B 2 17.036 63.589 -10.756 1 32.52 ? N7 SAM 417 A 1 HETATM 21 C C5 SAM . . . B 2 16.952 62.269 -10.497 1 32.9 ? C5 SAM 417 A 1 HETATM 22 C C6 SAM . . . B 2 15.929 61.333 -10.634 1 32.05 ? C6 SAM 417 A 1 HETATM 23 N N6 SAM . . . B 2 14.731 61.664 -11.123 1 34.22 ? N6 SAM 417 A 1 HETATM 24 N N1 SAM . . . B 2 16.169 60.027 -10.272 1 32.52 ? N1 SAM 417 A 1 HETATM 25 C C2 SAM . . . B 2 17.394 59.624 -9.765 1 31.76 ? C2 SAM 417 A 1 HETATM 26 N N3 SAM . . . B 2 18.394 60.567 -9.636 1 31.61 ? N3 SAM 417 A 1 HETATM 27 C C4 SAM . . . B 2 18.186 61.86 -9.987 1 30.78 ? C4 SAM 417 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #