data_3QOX # _model_server_result.job_id uOHL2LrPFSmmGFrrmjMrOw _model_server_result.datetime_utc '2024-11-29 15:04:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":417}' # _entry.id 3QOX # _exptl.entry_id 3QOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QOX _cell.length_a 152.71 _cell.length_b 152.71 _cell.length_c 51.31 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3QOX _atom_sites.fract_transf_matrix[1][1] 0.006548 _atom_sites.fract_transf_matrix[1][2] 0.003781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 417 1 SAH SAH . C 3 SO4 A 1 418 1 SO4 SO4 . D 3 SO4 A 1 419 2 SO4 SO4 . E 3 SO4 A 1 420 3 SO4 SO4 . F 3 SO4 A 1 421 4 SO4 SO4 . G 4 HOH A 1 422 1 HOH HOH . G 4 HOH A 2 423 2 HOH HOH . G 4 HOH A 3 424 3 HOH HOH . G 4 HOH A 4 425 4 HOH HOH . G 4 HOH A 5 426 5 HOH HOH . G 4 HOH A 6 427 6 HOH HOH . G 4 HOH A 7 428 7 HOH HOH . G 4 HOH A 8 429 8 HOH HOH . G 4 HOH A 9 430 9 HOH HOH . G 4 HOH A 10 431 10 HOH HOH . G 4 HOH A 11 432 11 HOH HOH . G 4 HOH A 12 433 12 HOH HOH . G 4 HOH A 13 434 13 HOH HOH . G 4 HOH A 14 435 14 HOH HOH . G 4 HOH A 15 436 15 HOH HOH . G 4 HOH A 16 437 16 HOH HOH . G 4 HOH A 17 438 17 HOH HOH . G 4 HOH A 18 439 18 HOH HOH . G 4 HOH A 19 440 19 HOH HOH . G 4 HOH A 20 441 20 HOH HOH . G 4 HOH A 21 442 21 HOH HOH . G 4 HOH A 22 443 22 HOH HOH . G 4 HOH A 23 444 23 HOH HOH . G 4 HOH A 24 445 24 HOH HOH . G 4 HOH A 25 446 25 HOH HOH . G 4 HOH A 26 447 26 HOH HOH . G 4 HOH A 27 448 27 HOH HOH . G 4 HOH A 28 449 28 HOH HOH . G 4 HOH A 29 450 29 HOH HOH . G 4 HOH A 30 451 30 HOH HOH . G 4 HOH A 31 452 31 HOH HOH . G 4 HOH A 32 453 32 HOH HOH . G 4 HOH A 33 454 33 HOH HOH . G 4 HOH A 34 455 34 HOH HOH . G 4 HOH A 35 456 35 HOH HOH . G 4 HOH A 36 457 36 HOH HOH . G 4 HOH A 37 458 37 HOH HOH . G 4 HOH A 38 459 38 HOH HOH . G 4 HOH A 39 460 39 HOH HOH . G 4 HOH A 40 461 40 HOH HOH . G 4 HOH A 41 462 41 HOH HOH . G 4 HOH A 42 463 42 HOH HOH . G 4 HOH A 43 464 43 HOH HOH . G 4 HOH A 44 465 44 HOH HOH . G 4 HOH A 45 466 45 HOH HOH . G 4 HOH A 46 467 46 HOH HOH . G 4 HOH A 47 468 47 HOH HOH . G 4 HOH A 48 469 48 HOH HOH . G 4 HOH A 49 470 49 HOH HOH . G 4 HOH A 50 471 50 HOH HOH . G 4 HOH A 51 472 51 HOH HOH . G 4 HOH A 52 473 52 HOH HOH . G 4 HOH A 53 474 53 HOH HOH . G 4 HOH A 54 475 54 HOH HOH . G 4 HOH A 55 476 55 HOH HOH . G 4 HOH A 56 477 56 HOH HOH . G 4 HOH A 57 478 57 HOH HOH . G 4 HOH A 58 479 58 HOH HOH . G 4 HOH A 59 480 59 HOH HOH . G 4 HOH A 60 481 60 HOH HOH . G 4 HOH A 61 482 61 HOH HOH . G 4 HOH A 62 483 62 HOH HOH . G 4 HOH A 63 484 63 HOH HOH . G 4 HOH A 64 485 64 HOH HOH . G 4 HOH A 65 486 65 HOH HOH . G 4 HOH A 66 487 66 HOH HOH . G 4 HOH A 67 488 67 HOH HOH . G 4 HOH A 68 489 68 HOH HOH . G 4 HOH A 69 490 69 HOH HOH . G 4 HOH A 70 491 70 HOH HOH . G 4 HOH A 71 492 71 HOH HOH . G 4 HOH A 72 493 72 HOH HOH . G 4 HOH A 73 494 73 HOH HOH . G 4 HOH A 74 495 74 HOH HOH . G 4 HOH A 75 496 75 HOH HOH . G 4 HOH A 76 497 76 HOH HOH . G 4 HOH A 77 498 77 HOH HOH . G 4 HOH A 78 499 78 HOH HOH . G 4 HOH A 79 500 79 HOH HOH . G 4 HOH A 80 501 80 HOH HOH . G 4 HOH A 81 502 81 HOH HOH . G 4 HOH A 82 503 82 HOH HOH . G 4 HOH A 83 504 83 HOH HOH . G 4 HOH A 84 505 84 HOH HOH . G 4 HOH A 85 506 85 HOH HOH . G 4 HOH A 86 507 86 HOH HOH . G 4 HOH A 87 508 87 HOH HOH . G 4 HOH A 88 509 88 HOH HOH . G 4 HOH A 89 510 89 HOH HOH . G 4 HOH A 90 511 90 HOH HOH . G 4 HOH A 91 512 91 HOH HOH . G 4 HOH A 92 513 92 HOH HOH . G 4 HOH A 93 514 93 HOH HOH . G 4 HOH A 94 515 94 HOH HOH . G 4 HOH A 95 516 95 HOH HOH . G 4 HOH A 96 517 96 HOH HOH . G 4 HOH A 97 518 97 HOH HOH . G 4 HOH A 98 519 98 HOH HOH . G 4 HOH A 99 520 99 HOH HOH . G 4 HOH A 100 521 100 HOH HOH . G 4 HOH A 101 522 101 HOH HOH . G 4 HOH A 102 523 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 41.856 51.336 1.443 1 22.71 ? N SAH 417 A 1 HETATM 2 C CA SAH . . . B 2 41.595 52.727 1.956 1 23.08 ? CA SAH 417 A 1 HETATM 3 C CB SAH . . . B 2 42.276 52.961 3.326 1 23.12 ? CB SAH 417 A 1 HETATM 4 C CG SAH . . . B 2 43.807 52.857 3.314 1 22.89 ? CG SAH 417 A 1 HETATM 5 S SD SAH . . . B 2 44.465 53.198 4.923 1 25.93 ? SD SAH 417 A 1 HETATM 6 C C SAH . . . B 2 42.071 53.724 0.924 1 23.11 ? C SAH 417 A 1 HETATM 7 O O SAH . . . B 2 41.541 54.835 0.783 1 23.09 ? O SAH 417 A 1 HETATM 8 O OXT SAH . . . B 2 43.014 53.445 0.185 1 22.88 ? OXT SAH 417 A 1 HETATM 9 C C5' SAH . . . B 2 45.171 51.663 5.449 1 24.3 ? C5' SAH 417 A 1 HETATM 10 C C4' SAH . . . B 2 44.138 50.863 6.241 1 24.37 ? C4' SAH 417 A 1 HETATM 11 O O4' SAH . . . B 2 44.605 49.515 6.344 1 26.67 ? O4' SAH 417 A 1 HETATM 12 C C3' SAH . . . B 2 43.954 51.352 7.682 1 25.95 ? C3' SAH 417 A 1 HETATM 13 O O3' SAH . . . B 2 42.565 51.595 7.937 1 25.5 ? O3' SAH 417 A 1 HETATM 14 C C2' SAH . . . B 2 44.417 50.191 8.549 1 24.87 ? C2' SAH 417 A 1 HETATM 15 O O2' SAH . . . B 2 43.589 50.031 9.696 1 25.7 ? O2' SAH 417 A 1 HETATM 16 C C1' SAH . . . B 2 44.175 49.034 7.614 1 25.33 ? C1' SAH 417 A 1 HETATM 17 N N9 SAH . . . B 2 44.882 47.821 8.042 1 26.31 ? N9 SAH 417 A 1 HETATM 18 C C8 SAH . . . B 2 46.178 47.738 8.447 1 24.95 ? C8 SAH 417 A 1 HETATM 19 N N7 SAH . . . B 2 46.474 46.462 8.767 1 25.75 ? N7 SAH 417 A 1 HETATM 20 C C5 SAH . . . B 2 45.367 45.706 8.577 1 26.88 ? C5 SAH 417 A 1 HETATM 21 C C6 SAH . . . B 2 44.995 44.272 8.731 1 27.97 ? C6 SAH 417 A 1 HETATM 22 N N6 SAH . . . B 2 45.893 43.358 9.177 1 28.11 ? N6 SAH 417 A 1 HETATM 23 N N1 SAH . . . B 2 43.722 43.909 8.415 1 28.4 ? N1 SAH 417 A 1 HETATM 24 C C2 SAH . . . B 2 42.815 44.809 7.968 1 27.36 ? C2 SAH 417 A 1 HETATM 25 N N3 SAH . . . B 2 43.087 46.119 7.816 1 25.91 ? N3 SAH 417 A 1 HETATM 26 C C4 SAH . . . B 2 44.317 46.614 8.089 1 25.95 ? C4 SAH 417 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #