data_3QOY # _model_server_result.job_id vUZaRa_GldRs6gpSzI4gzw _model_server_result.datetime_utc '2024-11-05 00:41:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qoy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":245}' # _entry.id 3QOY # _exptl.entry_id 3QOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.32 _cell.angle_gamma 90 _cell.entry_id 3QOY _cell.length_a 107.49 _cell.length_b 37.52 _cell.length_c 58.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 332 n n C C2 TRS sing 333 n n C C3 TRS sing 334 n n C N TRS sing 335 n n C1 O1 TRS sing 336 n n C1 H11 TRS sing 337 n n C1 H12 TRS sing 338 n n C2 O2 TRS sing 339 n n C2 H21 TRS sing 340 n n C2 H22 TRS sing 341 n n C3 O3 TRS sing 342 n n C3 H31 TRS sing 343 n n C3 H32 TRS sing 344 n n N HN1 TRS sing 345 n n N HN2 TRS sing 346 n n N HN3 TRS sing 347 n n O1 HO1 TRS sing 348 n n O2 HO2 TRS sing 349 n n O3 HO3 TRS sing 350 n n # _atom_sites.entry_id 3QOY _atom_sites.fract_transf_matrix[1][1] 0.009303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003446 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 243 1 SO4 SO4 . C 2 SO4 A 1 244 2 SO4 SO4 . D 3 TRS A 1 245 3 TRS TRS . E 4 ACY A 1 246 4 ACY ACY . F 5 HOH A 1 247 1 HOH HOH . F 5 HOH A 2 248 2 HOH HOH . F 5 HOH A 3 249 3 HOH HOH . F 5 HOH A 4 250 4 HOH HOH . F 5 HOH A 5 251 5 HOH HOH . F 5 HOH A 6 252 6 HOH HOH . F 5 HOH A 7 253 7 HOH HOH . F 5 HOH A 8 254 8 HOH HOH . F 5 HOH A 9 255 9 HOH HOH . F 5 HOH A 10 256 10 HOH HOH . F 5 HOH A 11 257 11 HOH HOH . F 5 HOH A 12 258 12 HOH HOH . F 5 HOH A 13 259 13 HOH HOH . F 5 HOH A 14 260 14 HOH HOH . F 5 HOH A 15 261 15 HOH HOH . F 5 HOH A 16 262 16 HOH HOH . F 5 HOH A 17 263 17 HOH HOH . F 5 HOH A 18 264 18 HOH HOH . F 5 HOH A 19 265 19 HOH HOH . F 5 HOH A 20 266 20 HOH HOH . F 5 HOH A 21 267 21 HOH HOH . F 5 HOH A 22 268 22 HOH HOH . F 5 HOH A 23 269 23 HOH HOH . F 5 HOH A 24 270 24 HOH HOH . F 5 HOH A 25 271 25 HOH HOH . F 5 HOH A 26 272 26 HOH HOH . F 5 HOH A 27 273 27 HOH HOH . F 5 HOH A 28 274 28 HOH HOH . F 5 HOH A 29 275 29 HOH HOH . F 5 HOH A 30 276 30 HOH HOH . F 5 HOH A 31 277 31 HOH HOH . F 5 HOH A 32 278 32 HOH HOH . F 5 HOH A 33 279 33 HOH HOH . F 5 HOH A 34 280 34 HOH HOH . F 5 HOH A 35 281 35 HOH HOH . F 5 HOH A 36 282 36 HOH HOH . F 5 HOH A 37 283 37 HOH HOH . F 5 HOH A 38 284 38 HOH HOH . F 5 HOH A 39 285 39 HOH HOH . F 5 HOH A 40 286 40 HOH HOH . F 5 HOH A 41 287 41 HOH HOH . F 5 HOH A 42 288 42 HOH HOH . F 5 HOH A 43 289 43 HOH HOH . F 5 HOH A 44 290 44 HOH HOH . F 5 HOH A 45 291 45 HOH HOH . F 5 HOH A 46 292 46 HOH HOH . F 5 HOH A 47 293 47 HOH HOH . F 5 HOH A 48 294 48 HOH HOH . F 5 HOH A 49 295 49 HOH HOH . F 5 HOH A 50 296 50 HOH HOH . F 5 HOH A 51 297 51 HOH HOH . F 5 HOH A 52 298 52 HOH HOH . F 5 HOH A 53 299 53 HOH HOH . F 5 HOH A 54 300 54 HOH HOH . F 5 HOH A 55 301 55 HOH HOH . F 5 HOH A 56 302 56 HOH HOH . F 5 HOH A 57 303 57 HOH HOH . F 5 HOH A 58 304 58 HOH HOH . F 5 HOH A 59 305 59 HOH HOH . F 5 HOH A 60 306 60 HOH HOH . F 5 HOH A 61 307 61 HOH HOH . F 5 HOH A 62 308 62 HOH HOH . F 5 HOH A 63 309 63 HOH HOH . F 5 HOH A 64 310 64 HOH HOH . F 5 HOH A 65 311 65 HOH HOH . F 5 HOH A 66 312 66 HOH HOH . F 5 HOH A 67 313 67 HOH HOH . F 5 HOH A 68 314 68 HOH HOH . F 5 HOH A 69 315 69 HOH HOH . F 5 HOH A 70 316 70 HOH HOH . F 5 HOH A 71 317 71 HOH HOH . F 5 HOH A 72 318 72 HOH HOH . F 5 HOH A 73 319 73 HOH HOH . F 5 HOH A 74 320 74 HOH HOH . F 5 HOH A 75 321 75 HOH HOH . F 5 HOH A 76 322 76 HOH HOH . F 5 HOH A 77 323 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 -11.534 26.34 -14.311 1 23.15 ? C TRS 245 A 1 HETATM 2 C C1 TRS . . . D 3 -12.672 26.615 -13.347 1 25.14 ? C1 TRS 245 A 1 HETATM 3 C C2 TRS . . . D 3 -11.97 26.539 -15.756 1 29.43 ? C2 TRS 245 A 1 HETATM 4 C C3 TRS . . . D 3 -11.129 24.919 -13.998 1 26.06 ? C3 TRS 245 A 1 HETATM 5 N N TRS . . . D 3 -10.398 27.228 -14.038 1 29.63 ? N TRS 245 A 1 HETATM 6 O O1 TRS . . . D 3 -13.694 25.707 -13.648 1 26.88 ? O1 TRS 245 A 1 HETATM 7 O O2 TRS . . . D 3 -10.84 26.512 -16.603 1 25.44 ? O2 TRS 245 A 1 HETATM 8 O O3 TRS . . . D 3 -11.402 24.743 -12.625 1 28.04 ? O3 TRS 245 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #