data_3QP1 # _model_server_result.job_id DXZruvx2ZdrVR9r9xvUkIw _model_server_result.datetime_utc '2025-03-02 09:55:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3QP1 # _exptl.entry_id 3QP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QP1 _cell.length_a 55.543 _cell.length_b 55.973 _cell.length_c 125.223 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 55.973 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N O3' _chem_comp.formula_weight 199.247 _chem_comp.id HL6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-hexanoyl-L-homoserine lactone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C4 HL6 sing 150 n n N C5 HL6 sing 151 n n C1 O1 HL6 doub 152 n n C1 O2 HL6 sing 153 n n C1 C4 HL6 sing 154 n n C2 O2 HL6 sing 155 n n C2 C3 HL6 sing 156 n n C3 C4 HL6 sing 157 n n O3 C5 HL6 doub 158 n n C5 C6 HL6 sing 159 n n C6 C7 HL6 sing 160 n n C7 C8 HL6 sing 161 n n C8 C9 HL6 sing 162 n n C9 C10 HL6 sing 163 n n N HN HL6 sing 164 n n C2 H2 HL6 sing 165 n n C2 H2A HL6 sing 166 n n C3 H3 HL6 sing 167 n n C3 H3A HL6 sing 168 n n C4 H4 HL6 sing 169 n n C6 H6 HL6 sing 170 n n C6 H6A HL6 sing 171 n n C7 H7 HL6 sing 172 n n C7 H7A HL6 sing 173 n n C8 H8 HL6 sing 174 n n C8 H8A HL6 sing 175 n n C9 H9 HL6 sing 176 n n C9 H9A HL6 sing 177 n n C10 H10 HL6 sing 178 n n C10 H10A HL6 sing 179 n n C10 H10B HL6 sing 180 n n # _atom_sites.entry_id 3QP1 _atom_sites.fract_transf_matrix[1][1] 0.018004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HL6 A 1 1 1 HL6 HL6 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 188 1 HOH HOH . C 3 HOH A 6 189 6 HOH HOH . C 3 HOH A 7 190 7 HOH HOH . C 3 HOH A 8 191 8 HOH HOH . C 3 HOH A 9 192 9 HOH HOH . C 3 HOH A 10 193 10 HOH HOH . C 3 HOH A 11 194 11 HOH HOH . C 3 HOH A 12 195 12 HOH HOH . C 3 HOH A 13 196 13 HOH HOH . C 3 HOH A 14 197 14 HOH HOH . C 3 HOH A 15 198 15 HOH HOH . C 3 HOH A 16 199 16 HOH HOH . C 3 HOH A 17 200 17 HOH HOH . C 3 HOH A 18 201 18 HOH HOH . C 3 HOH A 19 202 19 HOH HOH . C 3 HOH A 20 203 20 HOH HOH . C 3 HOH A 21 204 21 HOH HOH . C 3 HOH A 22 205 22 HOH HOH . C 3 HOH A 23 206 23 HOH HOH . C 3 HOH A 24 207 24 HOH HOH . C 3 HOH A 25 208 25 HOH HOH . C 3 HOH A 26 209 26 HOH HOH . C 3 HOH A 27 210 27 HOH HOH . C 3 HOH A 28 211 28 HOH HOH . C 3 HOH A 29 212 29 HOH HOH . C 3 HOH A 30 213 30 HOH HOH . C 3 HOH A 31 214 31 HOH HOH . C 3 HOH A 32 215 32 HOH HOH . C 3 HOH A 33 216 33 HOH HOH . C 3 HOH A 34 217 34 HOH HOH . C 3 HOH A 35 218 35 HOH HOH . C 3 HOH A 36 219 36 HOH HOH . C 3 HOH A 37 220 37 HOH HOH . C 3 HOH A 38 221 38 HOH HOH . C 3 HOH A 39 222 39 HOH HOH . C 3 HOH A 40 223 40 HOH HOH . C 3 HOH A 41 224 41 HOH HOH . C 3 HOH A 42 225 42 HOH HOH . C 3 HOH A 43 226 43 HOH HOH . C 3 HOH A 44 227 44 HOH HOH . C 3 HOH A 45 228 45 HOH HOH . C 3 HOH A 46 229 46 HOH HOH . C 3 HOH A 47 230 47 HOH HOH . C 3 HOH A 48 231 48 HOH HOH . C 3 HOH A 49 232 49 HOH HOH . C 3 HOH A 50 233 50 HOH HOH . C 3 HOH A 51 234 51 HOH HOH . C 3 HOH A 52 235 52 HOH HOH . C 3 HOH A 53 236 53 HOH HOH . C 3 HOH A 54 237 54 HOH HOH . C 3 HOH A 55 238 55 HOH HOH . C 3 HOH A 56 239 56 HOH HOH . C 3 HOH A 57 240 57 HOH HOH . C 3 HOH A 58 241 58 HOH HOH . C 3 HOH A 59 242 59 HOH HOH . C 3 HOH A 60 243 60 HOH HOH . C 3 HOH A 61 244 61 HOH HOH . C 3 HOH A 62 245 62 HOH HOH . C 3 HOH A 63 246 63 HOH HOH . C 3 HOH A 64 247 64 HOH HOH . C 3 HOH A 65 248 65 HOH HOH . C 3 HOH A 66 249 66 HOH HOH . C 3 HOH A 67 250 67 HOH HOH . C 3 HOH A 68 251 68 HOH HOH . C 3 HOH A 69 252 69 HOH HOH . C 3 HOH A 70 253 70 HOH HOH . C 3 HOH A 71 254 71 HOH HOH . C 3 HOH A 72 255 72 HOH HOH . C 3 HOH A 73 256 73 HOH HOH . C 3 HOH A 74 257 74 HOH HOH . C 3 HOH A 75 258 75 HOH HOH . C 3 HOH A 76 259 76 HOH HOH . C 3 HOH A 77 260 77 HOH HOH . C 3 HOH A 78 261 78 HOH HOH . C 3 HOH A 79 262 79 HOH HOH . C 3 HOH A 80 263 80 HOH HOH . C 3 HOH A 81 264 81 HOH HOH . C 3 HOH A 82 265 82 HOH HOH . C 3 HOH A 83 266 83 HOH HOH . C 3 HOH A 84 267 84 HOH HOH . C 3 HOH A 85 268 85 HOH HOH . C 3 HOH A 86 269 86 HOH HOH . C 3 HOH A 87 270 87 HOH HOH . C 3 HOH A 88 271 88 HOH HOH . C 3 HOH A 89 272 89 HOH HOH . C 3 HOH A 90 273 90 HOH HOH . C 3 HOH A 91 274 91 HOH HOH . C 3 HOH A 92 275 92 HOH HOH . C 3 HOH A 93 276 93 HOH HOH . C 3 HOH A 94 277 94 HOH HOH . C 3 HOH A 95 278 95 HOH HOH . C 3 HOH A 96 279 96 HOH HOH . C 3 HOH A 97 280 97 HOH HOH . C 3 HOH A 98 281 98 HOH HOH . C 3 HOH A 99 282 99 HOH HOH . C 3 HOH A 100 283 100 HOH HOH . C 3 HOH A 101 284 101 HOH HOH . C 3 HOH A 102 285 102 HOH HOH . C 3 HOH A 103 286 103 HOH HOH . C 3 HOH A 104 287 104 HOH HOH . C 3 HOH A 105 288 105 HOH HOH . C 3 HOH A 106 289 106 HOH HOH . C 3 HOH A 107 290 107 HOH HOH . C 3 HOH A 108 291 108 HOH HOH . C 3 HOH A 109 292 109 HOH HOH . C 3 HOH A 110 293 110 HOH HOH . C 3 HOH A 111 294 111 HOH HOH . C 3 HOH A 112 295 112 HOH HOH . C 3 HOH A 113 296 113 HOH HOH . C 3 HOH A 114 297 114 HOH HOH . C 3 HOH A 115 298 115 HOH HOH . C 3 HOH A 116 299 116 HOH HOH . C 3 HOH A 117 300 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HL6 . . . B 2 21.123 13.704 48.23 1 20.51 ? N HL6 1 A 1 HETATM 2 C C1 HL6 . . . B 2 21.523 11.404 47.531 1 20.59 ? C1 HL6 1 A 1 HETATM 3 O O1 HL6 . . . B 2 20.718 10.818 48.237 1 20.37 ? O1 HL6 1 A 1 HETATM 4 C C2 HL6 . . . B 2 23.433 11.683 46.192 1 20.85 ? C2 HL6 1 A 1 HETATM 5 O O2 HL6 . . . B 2 22.653 10.75 46.955 1 22.18 ? O2 HL6 1 A 1 HETATM 6 C C3 HL6 . . . B 2 22.946 13.061 46.673 1 19.95 ? C3 HL6 1 A 1 HETATM 7 O O3 HL6 . . . B 2 19.033 14.04 47.447 1 20.2 ? O3 HL6 1 A 1 HETATM 8 C C4 HL6 . . . B 2 21.508 12.844 47.128 1 20.64 ? C4 HL6 1 A 1 HETATM 9 C C5 HL6 . . . B 2 19.895 14.226 48.298 1 21.93 ? C5 HL6 1 A 1 HETATM 10 C C6 HL6 . . . B 2 19.632 15.074 49.504 1 22.31 ? C6 HL6 1 A 1 HETATM 11 C C7 HL6 . . . B 2 18.44 14.559 50.28 1 27.56 ? C7 HL6 1 A 1 HETATM 12 C C8 HL6 . . . B 2 18.792 13.29 51.025 1 28.28 ? C8 HL6 1 A 1 HETATM 13 C C9 HL6 . . . B 2 17.94 13.22 52.28 1 28.87 ? C9 HL6 1 A 1 HETATM 14 C C10 HL6 . . . B 2 17.658 11.782 52.628 1 32.11 ? C10 HL6 1 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #