data_3QP4 # _model_server_result.job_id gFrNdGjjINNtDMV_GbHU1Q _model_server_result.datetime_utc '2024-11-04 23:06:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3QP4 # _exptl.entry_id 3QP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QP4 _cell.length_a 55.196 _cell.length_b 56.216 _cell.length_c 124.944 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 56.216 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H25 N O3' _chem_comp.formula_weight 255.353 _chem_comp.id HL0 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-decanoyl-L-homoserine lactone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C10 HL0 sing 150 n n N C11 HL0 sing 151 n n C1 C2 HL0 sing 152 n n O1 C10 HL0 doub 153 n n C2 C3 HL0 sing 154 n n O2 C13 HL0 sing 155 n n O2 C14 HL0 sing 156 n n C3 C4 HL0 sing 157 n n O3 C14 HL0 doub 158 n n C4 C5 HL0 sing 159 n n C5 C6 HL0 sing 160 n n C6 C7 HL0 sing 161 n n C7 C8 HL0 sing 162 n n C8 C9 HL0 sing 163 n n C9 C10 HL0 sing 164 n n C11 C12 HL0 sing 165 n n C11 C14 HL0 sing 166 n n C12 C13 HL0 sing 167 n n N HN HL0 sing 168 n n C1 H1 HL0 sing 169 n n C1 H1A HL0 sing 170 n n C1 H1B HL0 sing 171 n n C2 H2 HL0 sing 172 n n C2 H2A HL0 sing 173 n n C3 H3 HL0 sing 174 n n C3 H3A HL0 sing 175 n n C4 H4 HL0 sing 176 n n C4 H4A HL0 sing 177 n n C5 H5 HL0 sing 178 n n C5 H5A HL0 sing 179 n n C6 H6 HL0 sing 180 n n C6 H6A HL0 sing 181 n n C7 H7 HL0 sing 182 n n C7 H7A HL0 sing 183 n n C8 H8 HL0 sing 184 n n C8 H8A HL0 sing 185 n n C9 H9 HL0 sing 186 n n C9 H9A HL0 sing 187 n n C11 H11 HL0 sing 188 n n C12 H12 HL0 sing 189 n n C12 H12A HL0 sing 190 n n C13 H13 HL0 sing 191 n n C13 H13A HL0 sing 192 n n # _atom_sites.entry_id 3QP4 _atom_sites.fract_transf_matrix[1][1] 0.018117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HL0 A 1 1 1 HL0 HL0 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 188 1 HOH HOH . C 3 HOH A 6 189 6 HOH HOH . C 3 HOH A 7 190 7 HOH HOH . C 3 HOH A 8 191 8 HOH HOH . C 3 HOH A 9 192 9 HOH HOH . C 3 HOH A 10 193 10 HOH HOH . C 3 HOH A 11 194 11 HOH HOH . C 3 HOH A 12 195 12 HOH HOH . C 3 HOH A 13 196 13 HOH HOH . C 3 HOH A 14 197 14 HOH HOH . C 3 HOH A 15 198 15 HOH HOH . C 3 HOH A 16 199 16 HOH HOH . C 3 HOH A 17 200 17 HOH HOH . C 3 HOH A 18 201 18 HOH HOH . C 3 HOH A 19 202 19 HOH HOH . C 3 HOH A 20 203 20 HOH HOH . C 3 HOH A 21 204 21 HOH HOH . C 3 HOH A 22 205 22 HOH HOH . C 3 HOH A 23 206 23 HOH HOH . C 3 HOH A 24 207 24 HOH HOH . C 3 HOH A 25 208 25 HOH HOH . C 3 HOH A 26 209 26 HOH HOH . C 3 HOH A 27 210 27 HOH HOH . C 3 HOH A 28 211 28 HOH HOH . C 3 HOH A 29 212 29 HOH HOH . C 3 HOH A 30 213 30 HOH HOH . C 3 HOH A 31 214 31 HOH HOH . C 3 HOH A 32 215 32 HOH HOH . C 3 HOH A 33 216 33 HOH HOH . C 3 HOH A 34 217 34 HOH HOH . C 3 HOH A 35 218 35 HOH HOH . C 3 HOH A 36 219 36 HOH HOH . C 3 HOH A 37 220 37 HOH HOH . C 3 HOH A 38 221 38 HOH HOH . C 3 HOH A 39 222 39 HOH HOH . C 3 HOH A 40 223 40 HOH HOH . C 3 HOH A 41 224 41 HOH HOH . C 3 HOH A 42 225 42 HOH HOH . C 3 HOH A 43 226 43 HOH HOH . C 3 HOH A 44 227 44 HOH HOH . C 3 HOH A 45 228 45 HOH HOH . C 3 HOH A 46 229 46 HOH HOH . C 3 HOH A 47 230 47 HOH HOH . C 3 HOH A 48 231 48 HOH HOH . C 3 HOH A 49 232 49 HOH HOH . C 3 HOH A 50 233 50 HOH HOH . C 3 HOH A 51 234 51 HOH HOH . C 3 HOH A 52 235 52 HOH HOH . C 3 HOH A 53 236 53 HOH HOH . C 3 HOH A 54 237 54 HOH HOH . C 3 HOH A 55 238 55 HOH HOH . C 3 HOH A 56 239 56 HOH HOH . C 3 HOH A 57 240 57 HOH HOH . C 3 HOH A 58 241 58 HOH HOH . C 3 HOH A 59 242 59 HOH HOH . C 3 HOH A 60 243 60 HOH HOH . C 3 HOH A 61 244 61 HOH HOH . C 3 HOH A 62 245 62 HOH HOH . C 3 HOH A 63 246 63 HOH HOH . C 3 HOH A 64 247 64 HOH HOH . C 3 HOH A 65 248 65 HOH HOH . C 3 HOH A 66 249 66 HOH HOH . C 3 HOH A 67 250 67 HOH HOH . C 3 HOH A 68 251 68 HOH HOH . C 3 HOH A 69 252 69 HOH HOH . C 3 HOH A 70 253 70 HOH HOH . C 3 HOH A 71 254 71 HOH HOH . C 3 HOH A 72 255 72 HOH HOH . C 3 HOH A 73 256 73 HOH HOH . C 3 HOH A 74 257 74 HOH HOH . C 3 HOH A 75 258 75 HOH HOH . C 3 HOH A 76 259 76 HOH HOH . C 3 HOH A 77 260 77 HOH HOH . C 3 HOH A 78 261 78 HOH HOH . C 3 HOH A 79 262 79 HOH HOH . C 3 HOH A 80 263 80 HOH HOH . C 3 HOH A 81 264 81 HOH HOH . C 3 HOH A 82 265 82 HOH HOH . C 3 HOH A 83 266 83 HOH HOH . C 3 HOH A 84 267 84 HOH HOH . C 3 HOH A 85 268 85 HOH HOH . C 3 HOH A 86 269 86 HOH HOH . C 3 HOH A 87 270 87 HOH HOH . C 3 HOH A 88 271 88 HOH HOH . C 3 HOH A 89 272 89 HOH HOH . C 3 HOH A 90 273 90 HOH HOH . C 3 HOH A 91 274 91 HOH HOH . C 3 HOH A 92 275 92 HOH HOH . C 3 HOH A 93 276 93 HOH HOH . C 3 HOH A 94 277 94 HOH HOH . C 3 HOH A 95 278 95 HOH HOH . C 3 HOH A 96 279 96 HOH HOH . C 3 HOH A 97 280 97 HOH HOH . C 3 HOH A 98 281 98 HOH HOH . C 3 HOH A 99 282 99 HOH HOH . C 3 HOH A 100 283 100 HOH HOH . C 3 HOH A 101 284 101 HOH HOH . C 3 HOH A 102 285 102 HOH HOH . C 3 HOH A 103 286 103 HOH HOH . C 3 HOH A 104 287 104 HOH HOH . C 3 HOH A 105 288 105 HOH HOH . C 3 HOH A 106 289 106 HOH HOH . C 3 HOH A 107 290 107 HOH HOH . C 3 HOH A 108 291 108 HOH HOH . C 3 HOH A 109 292 109 HOH HOH . C 3 HOH A 110 293 110 HOH HOH . C 3 HOH A 111 294 111 HOH HOH . C 3 HOH A 112 295 112 HOH HOH . C 3 HOH A 113 296 113 HOH HOH . C 3 HOH A 114 297 114 HOH HOH . C 3 HOH A 115 298 115 HOH HOH . C 3 HOH A 116 299 116 HOH HOH . C 3 HOH A 117 300 117 HOH HOH . C 3 HOH A 118 301 118 HOH HOH . C 3 HOH A 119 302 119 HOH HOH . C 3 HOH A 120 303 120 HOH HOH . C 3 HOH A 121 304 121 HOH HOH . C 3 HOH A 122 305 122 HOH HOH . C 3 HOH A 123 306 123 HOH HOH . C 3 HOH A 124 307 124 HOH HOH . C 3 HOH A 125 308 125 HOH HOH . C 3 HOH A 126 309 126 HOH HOH . C 3 HOH A 127 310 127 HOH HOH . C 3 HOH A 128 311 128 HOH HOH . C 3 HOH A 129 312 129 HOH HOH . C 3 HOH A 130 313 130 HOH HOH . C 3 HOH A 131 314 131 HOH HOH . C 3 HOH A 132 315 132 HOH HOH . C 3 HOH A 133 316 133 HOH HOH . C 3 HOH A 134 317 134 HOH HOH . C 3 HOH A 135 318 135 HOH HOH . C 3 HOH A 136 319 136 HOH HOH . C 3 HOH A 137 320 137 HOH HOH . C 3 HOH A 138 321 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HL0 . . . B 2 21.095 13.774 48.169 1 20.65 ? N HL0 1 A 1 HETATM 2 C C1 HL0 . . . B 2 17.119 11.537 57.237 1 42.35 ? C1 HL0 1 A 1 HETATM 3 O O1 HL0 . . . B 2 19.044 14.129 47.323 1 20.18 ? O1 HL0 1 A 1 HETATM 4 C C2 HL0 . . . B 2 17.852 10.873 56.089 1 41.5 ? C2 HL0 1 A 1 HETATM 5 O O2 HL0 . . . B 2 22.602 10.789 46.997 1 20.65 ? O2 HL0 1 A 1 HETATM 6 C C3 HL0 . . . B 2 17.034 10.876 54.803 1 39.04 ? C3 HL0 1 A 1 HETATM 7 O O3 HL0 . . . B 2 20.636 10.894 48.237 1 20.58 ? O3 HL0 1 A 1 HETATM 8 C C4 HL0 . . . B 2 17.182 12.206 54.078 1 37.35 ? C4 HL0 1 A 1 HETATM 9 C C5 HL0 . . . B 2 17.929 12.06 52.762 1 35.31 ? C5 HL0 1 A 1 HETATM 10 C C6 HL0 . . . B 2 17.821 13.372 52.013 1 31.58 ? C6 HL0 1 A 1 HETATM 11 C C7 HL0 . . . B 2 18.775 13.457 50.831 1 28 ? C7 HL0 1 A 1 HETATM 12 C C8 HL0 . . . B 2 18.512 14.801 50.176 1 26.93 ? C8 HL0 1 A 1 HETATM 13 C C9 HL0 . . . B 2 19.664 15.285 49.324 1 23.38 ? C9 HL0 1 A 1 HETATM 14 C C10 HL0 . . . B 2 19.895 14.347 48.174 1 22.05 ? C10 HL0 1 A 1 HETATM 15 C C11 HL0 . . . B 2 21.468 12.877 47.107 1 20.03 ? C11 HL0 1 A 1 HETATM 16 C C12 HL0 . . . B 2 22.896 13.105 46.638 1 19.8 ? C12 HL0 1 A 1 HETATM 17 C C13 HL0 . . . B 2 23.414 11.708 46.247 1 19.34 ? C13 HL0 1 A 1 HETATM 18 C C14 HL0 . . . B 2 21.466 11.451 47.545 1 20.51 ? C14 HL0 1 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #