data_3QP6 # _model_server_result.job_id gynVMkatAWWNedEg2qvXFw _model_server_result.datetime_utc '2024-11-07 15:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":266}' # _entry.id 3QP6 # _exptl.entry_id 3QP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QP6 _cell.length_a 50.248 _cell.length_b 89.12 _cell.length_c 132.125 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 66.0625 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N O3' _chem_comp.formula_weight 199.247 _chem_comp.id HL6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-hexanoyl-L-homoserine lactone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C4 HL6 sing 150 n n N C5 HL6 sing 151 n n C1 O1 HL6 doub 152 n n C1 O2 HL6 sing 153 n n C1 C4 HL6 sing 154 n n C2 O2 HL6 sing 155 n n C2 C3 HL6 sing 156 n n C3 C4 HL6 sing 157 n n O3 C5 HL6 doub 158 n n C5 C6 HL6 sing 159 n n C6 C7 HL6 sing 160 n n C7 C8 HL6 sing 161 n n C8 C9 HL6 sing 162 n n C9 C10 HL6 sing 163 n n N HN HL6 sing 164 n n C2 H2 HL6 sing 165 n n C2 H2A HL6 sing 166 n n C3 H3 HL6 sing 167 n n C3 H3A HL6 sing 168 n n C4 H4 HL6 sing 169 n n C6 H6 HL6 sing 170 n n C6 H6A HL6 sing 171 n n C7 H7 HL6 sing 172 n n C7 H7A HL6 sing 173 n n C8 H8 HL6 sing 174 n n C8 H8A HL6 sing 175 n n C9 H9 HL6 sing 176 n n C9 H9A HL6 sing 177 n n C10 H10 HL6 sing 178 n n C10 H10A HL6 sing 179 n n C10 H10B HL6 sing 180 n n # _atom_sites.entry_id 3QP6 _atom_sites.fract_transf_matrix[1][1] 0.019901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HL6 A 1 266 1 HL6 HL6 . C 3 HOH A 1 267 1 HOH HOH . C 3 HOH A 2 268 2 HOH HOH . C 3 HOH A 3 269 3 HOH HOH . C 3 HOH A 4 270 4 HOH HOH . C 3 HOH A 5 271 5 HOH HOH . C 3 HOH A 6 272 6 HOH HOH . C 3 HOH A 7 273 7 HOH HOH . C 3 HOH A 8 274 8 HOH HOH . C 3 HOH A 9 275 9 HOH HOH . C 3 HOH A 10 276 10 HOH HOH . C 3 HOH A 11 277 11 HOH HOH . C 3 HOH A 12 278 12 HOH HOH . C 3 HOH A 13 279 13 HOH HOH . C 3 HOH A 14 280 14 HOH HOH . C 3 HOH A 15 281 15 HOH HOH . C 3 HOH A 16 282 16 HOH HOH . C 3 HOH A 17 283 17 HOH HOH . C 3 HOH A 18 284 18 HOH HOH . C 3 HOH A 19 285 19 HOH HOH . C 3 HOH A 20 286 20 HOH HOH . C 3 HOH A 21 287 21 HOH HOH . C 3 HOH A 22 288 22 HOH HOH . C 3 HOH A 23 289 23 HOH HOH . C 3 HOH A 24 290 24 HOH HOH . C 3 HOH A 25 291 25 HOH HOH . C 3 HOH A 26 292 26 HOH HOH . C 3 HOH A 27 293 27 HOH HOH . C 3 HOH A 28 294 28 HOH HOH . C 3 HOH A 29 295 29 HOH HOH . C 3 HOH A 30 296 30 HOH HOH . C 3 HOH A 31 297 31 HOH HOH . C 3 HOH A 32 298 32 HOH HOH . C 3 HOH A 33 299 33 HOH HOH . C 3 HOH A 34 300 34 HOH HOH . C 3 HOH A 35 301 35 HOH HOH . C 3 HOH A 36 302 36 HOH HOH . C 3 HOH A 37 303 37 HOH HOH . C 3 HOH A 38 304 38 HOH HOH . C 3 HOH A 39 305 39 HOH HOH . C 3 HOH A 40 306 40 HOH HOH . C 3 HOH A 41 307 41 HOH HOH . C 3 HOH A 42 308 42 HOH HOH . C 3 HOH A 43 309 43 HOH HOH . C 3 HOH A 44 310 44 HOH HOH . C 3 HOH A 45 311 45 HOH HOH . C 3 HOH A 46 312 46 HOH HOH . C 3 HOH A 47 313 47 HOH HOH . C 3 HOH A 48 314 48 HOH HOH . C 3 HOH A 49 315 49 HOH HOH . C 3 HOH A 50 316 50 HOH HOH . C 3 HOH A 51 317 51 HOH HOH . C 3 HOH A 52 318 52 HOH HOH . C 3 HOH A 53 319 53 HOH HOH . C 3 HOH A 54 320 54 HOH HOH . C 3 HOH A 55 321 55 HOH HOH . C 3 HOH A 56 322 56 HOH HOH . C 3 HOH A 57 323 57 HOH HOH . C 3 HOH A 58 324 58 HOH HOH . C 3 HOH A 59 325 59 HOH HOH . C 3 HOH A 60 326 60 HOH HOH . C 3 HOH A 61 327 61 HOH HOH . C 3 HOH A 62 328 62 HOH HOH . C 3 HOH A 63 329 63 HOH HOH . C 3 HOH A 64 330 64 HOH HOH . C 3 HOH A 65 331 65 HOH HOH . C 3 HOH A 66 332 66 HOH HOH . C 3 HOH A 67 333 67 HOH HOH . C 3 HOH A 68 334 68 HOH HOH . C 3 HOH A 69 335 69 HOH HOH . C 3 HOH A 70 336 70 HOH HOH . C 3 HOH A 71 337 71 HOH HOH . C 3 HOH A 72 338 72 HOH HOH . C 3 HOH A 73 339 73 HOH HOH . C 3 HOH A 74 340 74 HOH HOH . C 3 HOH A 75 341 75 HOH HOH . C 3 HOH A 76 342 76 HOH HOH . C 3 HOH A 77 343 77 HOH HOH . C 3 HOH A 78 344 78 HOH HOH . C 3 HOH A 79 345 79 HOH HOH . C 3 HOH A 80 346 80 HOH HOH . C 3 HOH A 81 347 81 HOH HOH . C 3 HOH A 82 348 82 HOH HOH . C 3 HOH A 83 349 83 HOH HOH . C 3 HOH A 84 350 84 HOH HOH . C 3 HOH A 85 351 85 HOH HOH . C 3 HOH A 86 352 86 HOH HOH . C 3 HOH A 87 353 87 HOH HOH . C 3 HOH A 88 354 88 HOH HOH . C 3 HOH A 89 355 89 HOH HOH . C 3 HOH A 90 356 90 HOH HOH . C 3 HOH A 91 357 91 HOH HOH . C 3 HOH A 92 358 92 HOH HOH . C 3 HOH A 93 359 93 HOH HOH . C 3 HOH A 94 360 94 HOH HOH . C 3 HOH A 95 361 95 HOH HOH . C 3 HOH A 96 362 96 HOH HOH . C 3 HOH A 97 363 97 HOH HOH . C 3 HOH A 98 364 98 HOH HOH . C 3 HOH A 99 365 99 HOH HOH . C 3 HOH A 100 366 100 HOH HOH . C 3 HOH A 101 367 101 HOH HOH . C 3 HOH A 102 368 102 HOH HOH . C 3 HOH A 103 369 103 HOH HOH . C 3 HOH A 104 370 104 HOH HOH . C 3 HOH A 105 371 105 HOH HOH . C 3 HOH A 106 372 106 HOH HOH . C 3 HOH A 107 373 107 HOH HOH . C 3 HOH A 108 374 108 HOH HOH . C 3 HOH A 109 375 109 HOH HOH . C 3 HOH A 110 376 110 HOH HOH . C 3 HOH A 111 377 111 HOH HOH . C 3 HOH A 112 378 112 HOH HOH . C 3 HOH A 113 379 113 HOH HOH . C 3 HOH A 114 380 114 HOH HOH . C 3 HOH A 115 381 115 HOH HOH . C 3 HOH A 116 382 116 HOH HOH . C 3 HOH A 117 383 117 HOH HOH . C 3 HOH A 118 384 118 HOH HOH . C 3 HOH A 119 385 119 HOH HOH . C 3 HOH A 120 386 120 HOH HOH . C 3 HOH A 121 387 121 HOH HOH . C 3 HOH A 122 388 122 HOH HOH . C 3 HOH A 123 389 123 HOH HOH . C 3 HOH A 124 390 124 HOH HOH . C 3 HOH A 125 391 125 HOH HOH . C 3 HOH A 126 392 126 HOH HOH . C 3 HOH A 127 393 127 HOH HOH . C 3 HOH A 128 394 128 HOH HOH . C 3 HOH A 129 395 129 HOH HOH . C 3 HOH A 130 396 130 HOH HOH . C 3 HOH A 131 397 131 HOH HOH . C 3 HOH A 132 398 132 HOH HOH . C 3 HOH A 133 399 133 HOH HOH . C 3 HOH A 134 400 134 HOH HOH . C 3 HOH A 135 401 135 HOH HOH . C 3 HOH A 136 402 136 HOH HOH . C 3 HOH A 137 403 137 HOH HOH . C 3 HOH A 138 404 138 HOH HOH . C 3 HOH A 139 405 139 HOH HOH . C 3 HOH A 140 406 140 HOH HOH . C 3 HOH A 141 407 141 HOH HOH . C 3 HOH A 142 408 142 HOH HOH . C 3 HOH A 143 409 143 HOH HOH . C 3 HOH A 144 410 144 HOH HOH . C 3 HOH A 145 411 145 HOH HOH . C 3 HOH A 146 412 146 HOH HOH . C 3 HOH A 147 413 147 HOH HOH . C 3 HOH A 148 414 148 HOH HOH . C 3 HOH A 149 415 149 HOH HOH . C 3 HOH A 150 416 150 HOH HOH . C 3 HOH A 151 417 151 HOH HOH . C 3 HOH A 152 418 152 HOH HOH . C 3 HOH A 153 419 153 HOH HOH . C 3 HOH A 154 420 154 HOH HOH . C 3 HOH A 155 421 155 HOH HOH . C 3 HOH A 156 422 156 HOH HOH . C 3 HOH A 157 423 157 HOH HOH . C 3 HOH A 158 424 158 HOH HOH . C 3 HOH A 159 425 159 HOH HOH . C 3 HOH A 160 426 160 HOH HOH . C 3 HOH A 161 427 161 HOH HOH . C 3 HOH A 162 428 162 HOH HOH . C 3 HOH A 163 429 163 HOH HOH . C 3 HOH A 164 430 164 HOH HOH . C 3 HOH A 165 431 165 HOH HOH . C 3 HOH A 166 432 166 HOH HOH . C 3 HOH A 167 433 167 HOH HOH . C 3 HOH A 168 434 168 HOH HOH . C 3 HOH A 169 435 169 HOH HOH . C 3 HOH A 170 436 170 HOH HOH . C 3 HOH A 171 437 171 HOH HOH . C 3 HOH A 172 438 172 HOH HOH . C 3 HOH A 173 439 173 HOH HOH . C 3 HOH A 174 440 174 HOH HOH . C 3 HOH A 175 441 175 HOH HOH . C 3 HOH A 176 442 176 HOH HOH . C 3 HOH A 177 443 177 HOH HOH . C 3 HOH A 178 444 178 HOH HOH . C 3 HOH A 179 445 179 HOH HOH . C 3 HOH A 180 446 180 HOH HOH . C 3 HOH A 181 447 181 HOH HOH . C 3 HOH A 182 448 182 HOH HOH . C 3 HOH A 183 449 183 HOH HOH . C 3 HOH A 184 450 184 HOH HOH . C 3 HOH A 185 451 185 HOH HOH . C 3 HOH A 186 452 186 HOH HOH . C 3 HOH A 187 453 187 HOH HOH . C 3 HOH A 188 454 188 HOH HOH . C 3 HOH A 189 455 189 HOH HOH . C 3 HOH A 190 456 190 HOH HOH . C 3 HOH A 191 457 191 HOH HOH . C 3 HOH A 192 458 192 HOH HOH . C 3 HOH A 193 459 193 HOH HOH . C 3 HOH A 194 460 194 HOH HOH . C 3 HOH A 195 461 195 HOH HOH . C 3 HOH A 196 462 196 HOH HOH . C 3 HOH A 197 463 197 HOH HOH . C 3 HOH A 198 464 198 HOH HOH . C 3 HOH A 199 465 199 HOH HOH . C 3 HOH A 200 466 200 HOH HOH . C 3 HOH A 201 467 201 HOH HOH . C 3 HOH A 202 468 202 HOH HOH . C 3 HOH A 203 469 203 HOH HOH . C 3 HOH A 204 470 204 HOH HOH . C 3 HOH A 205 471 205 HOH HOH . C 3 HOH A 206 472 206 HOH HOH . C 3 HOH A 207 473 207 HOH HOH . C 3 HOH A 208 474 208 HOH HOH . C 3 HOH A 209 475 209 HOH HOH . C 3 HOH A 210 476 210 HOH HOH . C 3 HOH A 211 477 211 HOH HOH . C 3 HOH A 212 478 212 HOH HOH . C 3 HOH A 213 479 213 HOH HOH . C 3 HOH A 214 480 214 HOH HOH . C 3 HOH A 215 481 215 HOH HOH . C 3 HOH A 216 482 216 HOH HOH . C 3 HOH A 217 483 217 HOH HOH . C 3 HOH A 218 484 218 HOH HOH . C 3 HOH A 219 485 219 HOH HOH . C 3 HOH A 220 486 220 HOH HOH . C 3 HOH A 221 487 221 HOH HOH . C 3 HOH A 222 488 222 HOH HOH . C 3 HOH A 223 489 223 HOH HOH . C 3 HOH A 224 490 224 HOH HOH . C 3 HOH A 225 491 225 HOH HOH . C 3 HOH A 226 492 226 HOH HOH . C 3 HOH A 227 493 227 HOH HOH . C 3 HOH A 228 494 228 HOH HOH . C 3 HOH A 229 495 229 HOH HOH . C 3 HOH A 230 496 230 HOH HOH . C 3 HOH A 231 497 231 HOH HOH . C 3 HOH A 232 498 232 HOH HOH . C 3 HOH A 233 499 233 HOH HOH . C 3 HOH A 234 500 234 HOH HOH . C 3 HOH A 235 501 235 HOH HOH . C 3 HOH A 236 502 236 HOH HOH . C 3 HOH A 237 503 237 HOH HOH . C 3 HOH A 238 504 238 HOH HOH . C 3 HOH A 239 505 239 HOH HOH . C 3 HOH A 240 506 240 HOH HOH . C 3 HOH A 241 507 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HL6 . . . B 2 16.032 4.427 52.421 1 13.71 ? N HL6 266 A 1 HETATM 2 C C1 HL6 . . . B 2 15.649 4.15 54.835 1 15.2 ? C1 HL6 266 A 1 HETATM 3 O O1 HL6 . . . B 2 14.737 4.96 54.964 1 18.28 ? O1 HL6 266 A 1 HETATM 4 C C2 HL6 . . . B 2 17.5 2.82 55.433 1 13.87 ? C2 HL6 266 A 1 HETATM 5 O O2 HL6 . . . B 2 16.494 3.715 55.927 1 17.19 ? O2 HL6 266 A 1 HETATM 6 C C3 HL6 . . . B 2 17.487 3.017 53.898 1 15.24 ? C3 HL6 266 A 1 HETATM 7 O O3 HL6 . . . B 2 14.129 3.493 51.614 1 15.12 ? O3 HL6 266 A 1 HETATM 8 C C4 HL6 . . . B 2 16.078 3.516 53.547 1 14.83 ? C4 HL6 266 A 1 HETATM 9 C C5 HL6 . . . B 2 15.013 4.352 51.556 1 16.51 ? C5 HL6 266 A 1 HETATM 10 C C6 HL6 . . . B 2 15.003 5.381 50.452 1 15.08 ? C6 HL6 266 A 1 HETATM 11 C C7 HL6 . . . B 2 13.713 6.21 50.54 1 17.69 ? C7 HL6 266 A 1 HETATM 12 C C8 HL6 . . . B 2 13.457 6.739 51.956 1 15.87 ? C8 HL6 266 A 1 HETATM 13 C C9 HL6 . . . B 2 12.437 7.881 51.969 1 16.76 ? C9 HL6 266 A 1 HETATM 14 C C10 HL6 . . . B 2 12.155 8.366 53.38 1 15.75 ? C10 HL6 266 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #