data_3QPJ # _model_server_result.job_id a62WZbT8fnmwViFRiw-MOQ _model_server_result.datetime_utc '2024-11-07 23:47:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":103}' # _entry.id 3QPJ # _exptl.entry_id 3QPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DITHIANE DIOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QPJ _cell.length_a 57.9 _cell.length_b 85.98 _cell.length_c 46.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id DTD _chem_comp.mon_nstd_flag . _chem_comp.name 'DITHIANE DIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTD sing 83 n n S1 S4 DTD sing 84 n n C1 C2 DTD sing 85 n n C1 H11 DTD sing 86 n n C1 H12 DTD sing 87 n n C2 O2 DTD sing 88 n n C2 C3 DTD sing 89 n n C2 H21 DTD sing 90 n n O2 HO2 DTD sing 91 n n C3 O3 DTD sing 92 n n C3 C4 DTD sing 93 n n C3 H31 DTD sing 94 n n O3 HO3 DTD sing 95 n n C4 S4 DTD sing 96 n n C4 H41 DTD sing 97 n n C4 H42 DTD sing 98 n n # _atom_sites.entry_id 3QPJ _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 100 2 CL CL . D 3 N4I B 1 100 1 N4I N4I . E 2 CL B 1 101 3 CL CL . F 2 CL B 1 102 4 CL CL . G 4 DTD B 1 103 5 DTD DTD . H 5 HOH A 1 101 4 HOH HOH . H 5 HOH A 2 102 102 HOH HOH . H 5 HOH A 3 103 103 HOH HOH . H 5 HOH A 4 104 5 HOH HOH . H 5 HOH A 5 105 7 HOH HOH . H 5 HOH A 6 106 9 HOH HOH . H 5 HOH A 7 107 107 HOH HOH . H 5 HOH A 8 108 11 HOH HOH . H 5 HOH A 9 109 109 HOH HOH . H 5 HOH A 10 110 110 HOH HOH . H 5 HOH A 11 111 111 HOH HOH . H 5 HOH A 12 112 14 HOH HOH . H 5 HOH A 13 113 113 HOH HOH . H 5 HOH A 14 114 16 HOH HOH . H 5 HOH A 15 115 115 HOH HOH . H 5 HOH A 16 116 116 HOH HOH . H 5 HOH A 17 117 20 HOH HOH . H 5 HOH A 18 118 118 HOH HOH . H 5 HOH A 19 119 119 HOH HOH . H 5 HOH A 20 120 120 HOH HOH . H 5 HOH A 21 121 121 HOH HOH . H 5 HOH A 22 122 25 HOH HOH . H 5 HOH A 23 123 27 HOH HOH . H 5 HOH A 24 124 124 HOH HOH . H 5 HOH A 25 125 125 HOH HOH . H 5 HOH A 26 126 126 HOH HOH . H 5 HOH A 27 127 127 HOH HOH . H 5 HOH A 28 128 28 HOH HOH . H 5 HOH A 29 129 33 HOH HOH . H 5 HOH A 30 130 34 HOH HOH . H 5 HOH A 31 131 131 HOH HOH . H 5 HOH A 32 132 132 HOH HOH . H 5 HOH A 33 133 36 HOH HOH . H 5 HOH A 34 134 134 HOH HOH . H 5 HOH A 35 135 135 HOH HOH . H 5 HOH A 36 136 45 HOH HOH . H 5 HOH A 37 137 47 HOH HOH . H 5 HOH A 38 138 138 HOH HOH . H 5 HOH A 39 139 139 HOH HOH . H 5 HOH A 40 140 48 HOH HOH . H 5 HOH A 41 141 49 HOH HOH . H 5 HOH A 42 142 52 HOH HOH . H 5 HOH A 43 143 54 HOH HOH . H 5 HOH A 44 144 55 HOH HOH . H 5 HOH A 45 145 145 HOH HOH . H 5 HOH A 46 146 58 HOH HOH . H 5 HOH A 47 147 147 HOH HOH . H 5 HOH A 48 148 60 HOH HOH . H 5 HOH A 49 149 62 HOH HOH . H 5 HOH A 50 150 150 HOH HOH . H 5 HOH A 51 151 64 HOH HOH . H 5 HOH A 52 152 65 HOH HOH . H 5 HOH A 53 153 153 HOH HOH . H 5 HOH A 54 154 66 HOH HOH . H 5 HOH A 55 155 155 HOH HOH . H 5 HOH A 56 156 67 HOH HOH . H 5 HOH A 57 157 69 HOH HOH . H 5 HOH A 58 158 158 HOH HOH . H 5 HOH A 59 159 159 HOH HOH . H 5 HOH A 60 160 160 HOH HOH . H 5 HOH A 61 161 70 HOH HOH . H 5 HOH A 62 162 71 HOH HOH . H 5 HOH A 63 163 73 HOH HOH . H 5 HOH A 64 164 164 HOH HOH . H 5 HOH A 65 165 76 HOH HOH . H 5 HOH A 66 166 78 HOH HOH . H 5 HOH A 67 167 81 HOH HOH . H 5 HOH A 68 168 168 HOH HOH . H 5 HOH A 69 169 84 HOH HOH . H 5 HOH A 70 170 86 HOH HOH . H 5 HOH A 71 171 171 HOH HOH . H 5 HOH A 72 172 90 HOH HOH . H 5 HOH A 73 173 173 HOH HOH . H 5 HOH A 74 174 174 HOH HOH . H 5 HOH A 75 175 175 HOH HOH . H 5 HOH A 76 176 91 HOH HOH . H 5 HOH A 77 177 177 HOH HOH . H 5 HOH A 78 178 97 HOH HOH . H 5 HOH A 79 179 98 HOH HOH . H 5 HOH A 80 180 180 HOH HOH . H 5 HOH A 81 181 181 HOH HOH . H 5 HOH A 82 185 185 HOH HOH . H 5 HOH A 83 186 186 HOH HOH . H 5 HOH A 84 187 187 HOH HOH . H 5 HOH A 85 188 188 HOH HOH . H 5 HOH A 86 189 189 HOH HOH . H 5 HOH A 87 191 191 HOH HOH . H 5 HOH A 88 193 193 HOH HOH . H 5 HOH A 89 195 195 HOH HOH . H 5 HOH A 90 196 196 HOH HOH . H 5 HOH A 91 199 199 HOH HOH . H 5 HOH A 92 204 204 HOH HOH . H 5 HOH A 93 206 206 HOH HOH . H 5 HOH A 94 207 207 HOH HOH . H 5 HOH A 95 209 209 HOH HOH . H 5 HOH A 96 210 210 HOH HOH . H 5 HOH A 97 213 213 HOH HOH . H 5 HOH A 98 214 214 HOH HOH . H 5 HOH A 99 215 215 HOH HOH . H 5 HOH A 100 221 221 HOH HOH . H 5 HOH A 101 225 225 HOH HOH . H 5 HOH A 102 228 228 HOH HOH . H 5 HOH A 103 229 229 HOH HOH . H 5 HOH A 104 232 232 HOH HOH . H 5 HOH A 105 236 236 HOH HOH . H 5 HOH A 106 237 237 HOH HOH . H 5 HOH A 107 240 240 HOH HOH . H 5 HOH A 108 242 242 HOH HOH . H 5 HOH A 109 245 245 HOH HOH . H 5 HOH A 110 247 247 HOH HOH . H 5 HOH A 111 253 253 HOH HOH . H 5 HOH A 112 255 255 HOH HOH . H 5 HOH A 113 256 256 HOH HOH . H 5 HOH A 114 261 261 HOH HOH . H 5 HOH A 115 264 264 HOH HOH . H 5 HOH A 116 278 278 HOH HOH . H 5 HOH A 117 279 279 HOH HOH . H 5 HOH A 118 282 282 HOH HOH . H 5 HOH A 119 286 286 HOH HOH . H 5 HOH A 120 288 288 HOH HOH . H 5 HOH A 121 298 298 HOH HOH . H 5 HOH A 122 303 303 HOH HOH . H 5 HOH A 123 304 304 HOH HOH . I 5 HOH B 1 104 104 HOH HOH . I 5 HOH B 2 105 105 HOH HOH . I 5 HOH B 3 106 106 HOH HOH . I 5 HOH B 4 107 3 HOH HOH . I 5 HOH B 5 108 108 HOH HOH . I 5 HOH B 6 109 6 HOH HOH . I 5 HOH B 7 110 8 HOH HOH . I 5 HOH B 8 111 10 HOH HOH . I 5 HOH B 9 112 112 HOH HOH . I 5 HOH B 10 113 12 HOH HOH . I 5 HOH B 11 114 114 HOH HOH . I 5 HOH B 12 115 13 HOH HOH . I 5 HOH B 13 116 15 HOH HOH . I 5 HOH B 14 117 117 HOH HOH . I 5 HOH B 15 118 17 HOH HOH . I 5 HOH B 16 119 18 HOH HOH . I 5 HOH B 17 120 19 HOH HOH . I 5 HOH B 18 121 21 HOH HOH . I 5 HOH B 19 122 122 HOH HOH . I 5 HOH B 20 123 123 HOH HOH . I 5 HOH B 21 124 22 HOH HOH . I 5 HOH B 22 125 23 HOH HOH . I 5 HOH B 23 126 24 HOH HOH . I 5 HOH B 24 127 26 HOH HOH . I 5 HOH B 25 128 128 HOH HOH . I 5 HOH B 26 129 129 HOH HOH . I 5 HOH B 27 130 130 HOH HOH . I 5 HOH B 28 131 29 HOH HOH . I 5 HOH B 29 132 30 HOH HOH . I 5 HOH B 30 133 133 HOH HOH . I 5 HOH B 31 134 31 HOH HOH . I 5 HOH B 32 135 32 HOH HOH . I 5 HOH B 33 136 136 HOH HOH . I 5 HOH B 34 137 137 HOH HOH . I 5 HOH B 35 138 35 HOH HOH . I 5 HOH B 36 139 37 HOH HOH . I 5 HOH B 37 140 140 HOH HOH . I 5 HOH B 38 141 141 HOH HOH . I 5 HOH B 39 142 142 HOH HOH . I 5 HOH B 40 143 143 HOH HOH . I 5 HOH B 41 144 144 HOH HOH . I 5 HOH B 42 145 38 HOH HOH . I 5 HOH B 43 146 146 HOH HOH . I 5 HOH B 44 147 39 HOH HOH . I 5 HOH B 45 148 148 HOH HOH . I 5 HOH B 46 149 149 HOH HOH . I 5 HOH B 47 150 40 HOH HOH . I 5 HOH B 48 151 151 HOH HOH . I 5 HOH B 49 152 152 HOH HOH . I 5 HOH B 50 153 41 HOH HOH . I 5 HOH B 51 154 154 HOH HOH . I 5 HOH B 52 155 42 HOH HOH . I 5 HOH B 53 156 156 HOH HOH . I 5 HOH B 54 157 157 HOH HOH . I 5 HOH B 55 158 44 HOH HOH . I 5 HOH B 56 159 46 HOH HOH . I 5 HOH B 57 160 50 HOH HOH . I 5 HOH B 58 161 161 HOH HOH . I 5 HOH B 59 162 162 HOH HOH . I 5 HOH B 60 163 163 HOH HOH . I 5 HOH B 61 164 51 HOH HOH . I 5 HOH B 62 165 165 HOH HOH . I 5 HOH B 63 166 166 HOH HOH . I 5 HOH B 64 167 167 HOH HOH . I 5 HOH B 65 168 53 HOH HOH . I 5 HOH B 66 169 169 HOH HOH . I 5 HOH B 67 170 170 HOH HOH . I 5 HOH B 68 171 56 HOH HOH . I 5 HOH B 69 172 172 HOH HOH . I 5 HOH B 70 173 57 HOH HOH . I 5 HOH B 71 174 59 HOH HOH . I 5 HOH B 72 175 61 HOH HOH . I 5 HOH B 73 176 176 HOH HOH . I 5 HOH B 74 177 63 HOH HOH . I 5 HOH B 75 178 68 HOH HOH . I 5 HOH B 76 179 179 HOH HOH . I 5 HOH B 77 180 72 HOH HOH . I 5 HOH B 78 181 74 HOH HOH . I 5 HOH B 79 182 182 HOH HOH . I 5 HOH B 80 183 183 HOH HOH . I 5 HOH B 81 184 184 HOH HOH . I 5 HOH B 82 185 75 HOH HOH . I 5 HOH B 83 186 77 HOH HOH . I 5 HOH B 84 187 79 HOH HOH . I 5 HOH B 85 188 80 HOH HOH . I 5 HOH B 86 189 82 HOH HOH . I 5 HOH B 87 190 190 HOH HOH . I 5 HOH B 88 191 83 HOH HOH . I 5 HOH B 89 192 85 HOH HOH . I 5 HOH B 90 193 87 HOH HOH . I 5 HOH B 91 194 194 HOH HOH . I 5 HOH B 92 195 88 HOH HOH . I 5 HOH B 93 196 89 HOH HOH . I 5 HOH B 94 197 197 HOH HOH . I 5 HOH B 95 198 198 HOH HOH . I 5 HOH B 96 199 92 HOH HOH . I 5 HOH B 97 200 200 HOH HOH . I 5 HOH B 98 201 201 HOH HOH . I 5 HOH B 99 202 202 HOH HOH . I 5 HOH B 100 203 93 HOH HOH . I 5 HOH B 101 204 94 HOH HOH . I 5 HOH B 102 205 205 HOH HOH . I 5 HOH B 103 206 95 HOH HOH . I 5 HOH B 104 207 96 HOH HOH . I 5 HOH B 105 208 208 HOH HOH . I 5 HOH B 106 209 99 HOH HOH . I 5 HOH B 107 210 100 HOH HOH . I 5 HOH B 108 211 101 HOH HOH . I 5 HOH B 109 212 212 HOH HOH . I 5 HOH B 110 216 216 HOH HOH . I 5 HOH B 111 217 217 HOH HOH . I 5 HOH B 112 218 218 HOH HOH . I 5 HOH B 113 220 220 HOH HOH . I 5 HOH B 114 223 223 HOH HOH . I 5 HOH B 115 224 224 HOH HOH . I 5 HOH B 116 226 226 HOH HOH . I 5 HOH B 117 227 227 HOH HOH . I 5 HOH B 118 230 230 HOH HOH . I 5 HOH B 119 231 231 HOH HOH . I 5 HOH B 120 234 234 HOH HOH . I 5 HOH B 121 235 235 HOH HOH . I 5 HOH B 122 238 238 HOH HOH . I 5 HOH B 123 239 239 HOH HOH . I 5 HOH B 124 243 243 HOH HOH . I 5 HOH B 125 246 246 HOH HOH . I 5 HOH B 126 249 249 HOH HOH . I 5 HOH B 127 250 250 HOH HOH . I 5 HOH B 128 252 252 HOH HOH . I 5 HOH B 129 254 254 HOH HOH . I 5 HOH B 130 259 259 HOH HOH . I 5 HOH B 131 262 262 HOH HOH . I 5 HOH B 132 263 263 HOH HOH . I 5 HOH B 133 265 265 HOH HOH . I 5 HOH B 134 266 266 HOH HOH . I 5 HOH B 135 273 273 HOH HOH . I 5 HOH B 136 274 274 HOH HOH . I 5 HOH B 137 283 283 HOH HOH . I 5 HOH B 138 285 285 HOH HOH . I 5 HOH B 139 291 291 HOH HOH . I 5 HOH B 140 295 295 HOH HOH . I 5 HOH B 141 299 299 HOH HOH . I 5 HOH B 142 300 300 HOH HOH . I 5 HOH B 143 301 301 HOH HOH . I 5 HOH B 144 302 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTD . . . G 4 14.841 -21.599 -9.981 1 29.48 ? S1 DTD 103 B 1 HETATM 2 C C1 DTD . . . G 4 14.588 -20.489 -8.635 1 19.82 ? C1 DTD 103 B 1 HETATM 3 C C2 DTD . . . G 4 13.099 -20.385 -8.311 1 21.98 ? C2 DTD 103 B 1 HETATM 4 O O2 DTD . . . G 4 12.958 -19.378 -7.295 1 21.35 ? O2 DTD 103 B 1 HETATM 5 C C3 DTD . . . G 4 12.441 -21.667 -7.786 1 21.47 ? C3 DTD 103 B 1 HETATM 6 O O3 DTD . . . G 4 11.065 -21.369 -7.545 1 24.02 ? O3 DTD 103 B 1 HETATM 7 C C4 DTD . . . G 4 12.438 -22.887 -8.706 1 23.13 ? C4 DTD 103 B 1 HETATM 8 S S4 DTD . . . G 4 14.04 -23.298 -9.311 1 25.61 ? S4 DTD 103 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #