data_3QPV
#
_model_server_result.job_id            Xpn-9EPOIlNTVGTGeJaCAA 
_model_server_result.datetime_utc      '2025-06-24 06:01:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":700}' 
#
_entry.id    3QPV 
#
_exptl.entry_id    3QPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QPV 
_cell.length_a            102.146 
_cell.length_b            102.146 
_cell.length_c            259.439 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.073 88.461031 43.239833 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3QPV 
_atom_sites.fract_transf_matrix[1][1]    0.00979 
_atom_sites.fract_transf_matrix[1][2]    0.005652 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FDP A 1 524 524 FDP FDP . 
C 3 PHS A 1 710 710 PHS PHS . 
D 4 ADP A 1 700 700 ADP ADP . 
E 5 F6P A 1 720 720 F6P F6P . 
F 6 HOH A 1 520 1 HOH HOH . 
F 6 HOH A 2 521 2 HOH HOH . 
F 6 HOH A 3 522 3 HOH HOH . 
F 6 HOH A 4 523 4 HOH HOH . 
F 6 HOH A 5 525 5 HOH HOH . 
F 6 HOH A 6 526 6 HOH HOH . 
F 6 HOH A 7 527 7 HOH HOH . 
F 6 HOH A 8 528 8 HOH HOH . 
F 6 HOH A 9 529 9 HOH HOH . 
F 6 HOH A 10 530 10 HOH HOH . 
F 6 HOH A 11 531 11 HOH HOH . 
F 6 HOH A 12 532 12 HOH HOH . 
F 6 HOH A 13 533 13 HOH HOH . 
F 6 HOH A 14 534 14 HOH HOH . 
F 6 HOH A 15 535 15 HOH HOH . 
F 6 HOH A 16 536 16 HOH HOH . 
F 6 HOH A 17 537 17 HOH HOH . 
F 6 HOH A 18 538 18 HOH HOH . 
F 6 HOH A 19 539 19 HOH HOH . 
F 6 HOH A 20 540 20 HOH HOH . 
F 6 HOH A 21 541 21 HOH HOH . 
F 6 HOH A 22 542 22 HOH HOH . 
F 6 HOH A 23 543 23 HOH HOH . 
F 6 HOH A 24 544 24 HOH HOH . 
F 6 HOH A 25 545 25 HOH HOH . 
F 6 HOH A 26 546 26 HOH HOH . 
F 6 HOH A 27 547 27 HOH HOH . 
F 6 HOH A 28 548 28 HOH HOH . 
F 6 HOH A 29 549 29 HOH HOH . 
F 6 HOH A 30 550 30 HOH HOH . 
F 6 HOH A 31 551 31 HOH HOH . 
F 6 HOH A 32 552 32 HOH HOH . 
F 6 HOH A 33 553 33 HOH HOH . 
F 6 HOH A 34 554 34 HOH HOH . 
F 6 HOH A 35 555 35 HOH HOH . 
F 6 HOH A 36 556 36 HOH HOH . 
F 6 HOH A 37 557 37 HOH HOH . 
F 6 HOH A 38 558 38 HOH HOH . 
F 6 HOH A 39 559 39 HOH HOH . 
F 6 HOH A 40 560 40 HOH HOH . 
F 6 HOH A 41 561 41 HOH HOH . 
F 6 HOH A 42 562 42 HOH HOH . 
F 6 HOH A 43 563 43 HOH HOH . 
F 6 HOH A 44 564 44 HOH HOH . 
F 6 HOH A 45 565 45 HOH HOH . 
F 6 HOH A 46 566 46 HOH HOH . 
F 6 HOH A 47 567 47 HOH HOH . 
F 6 HOH A 48 568 48 HOH HOH . 
F 6 HOH A 49 569 49 HOH HOH . 
F 6 HOH A 50 570 50 HOH HOH . 
F 6 HOH A 51 571 51 HOH HOH . 
F 6 HOH A 52 572 52 HOH HOH . 
F 6 HOH A 53 573 53 HOH HOH . 
F 6 HOH A 54 574 54 HOH HOH . 
F 6 HOH A 55 575 55 HOH HOH . 
F 6 HOH A 56 576 56 HOH HOH . 
F 6 HOH A 57 577 57 HOH HOH . 
F 6 HOH A 58 578 58 HOH HOH . 
F 6 HOH A 59 579 59 HOH HOH . 
F 6 HOH A 60 580 60 HOH HOH . 
F 6 HOH A 61 581 61 HOH HOH . 
F 6 HOH A 62 582 62 HOH HOH . 
F 6 HOH A 63 583 63 HOH HOH . 
F 6 HOH A 64 584 64 HOH HOH . 
F 6 HOH A 65 585 65 HOH HOH . 
F 6 HOH A 66 586 66 HOH HOH . 
F 6 HOH A 67 587 67 HOH HOH . 
F 6 HOH A 68 588 68 HOH HOH . 
F 6 HOH A 69 589 69 HOH HOH . 
F 6 HOH A 70 590 70 HOH HOH . 
F 6 HOH A 71 591 71 HOH HOH . 
F 6 HOH A 72 592 72 HOH HOH . 
F 6 HOH A 73 593 73 HOH HOH . 
F 6 HOH A 74 594 74 HOH HOH . 
F 6 HOH A 75 595 75 HOH HOH . 
F 6 HOH A 76 596 76 HOH HOH . 
F 6 HOH A 77 597 77 HOH HOH . 
F 6 HOH A 78 598 78 HOH HOH . 
F 6 HOH A 79 599 79 HOH HOH . 
F 6 HOH A 80 600 80 HOH HOH . 
F 6 HOH A 81 601 81 HOH HOH . 
F 6 HOH A 82 602 82 HOH HOH . 
F 6 HOH A 83 603 83 HOH HOH . 
F 6 HOH A 84 604 84 HOH HOH . 
F 6 HOH A 85 605 85 HOH HOH . 
F 6 HOH A 86 606 86 HOH HOH . 
F 6 HOH A 87 607 87 HOH HOH . 
F 6 HOH A 88 608 88 HOH HOH . 
F 6 HOH A 89 609 89 HOH HOH . 
F 6 HOH A 90 610 90 HOH HOH . 
F 6 HOH A 91 611 91 HOH HOH . 
F 6 HOH A 92 612 92 HOH HOH . 
F 6 HOH A 93 613 93 HOH HOH . 
F 6 HOH A 94 614 94 HOH HOH . 
F 6 HOH A 95 615 95 HOH HOH . 
F 6 HOH A 96 616 96 HOH HOH . 
F 6 HOH A 97 617 97 HOH HOH . 
F 6 HOH A 98 618 98 HOH HOH . 
F 6 HOH A 99 619 99 HOH HOH . 
F 6 HOH A 100 620 100 HOH HOH . 
F 6 HOH A 101 621 101 HOH HOH . 
F 6 HOH A 102 622 102 HOH HOH . 
F 6 HOH A 103 623 103 HOH HOH . 
F 6 HOH A 104 624 104 HOH HOH . 
F 6 HOH A 105 625 105 HOH HOH . 
F 6 HOH A 106 626 106 HOH HOH . 
F 6 HOH A 107 627 107 HOH HOH . 
F 6 HOH A 108 628 108 HOH HOH . 
F 6 HOH A 109 629 109 HOH HOH . 
F 6 HOH A 110 630 110 HOH HOH . 
F 6 HOH A 111 631 111 HOH HOH . 
F 6 HOH A 112 632 112 HOH HOH . 
F 6 HOH A 113 633 113 HOH HOH . 
F 6 HOH A 114 634 114 HOH HOH . 
F 6 HOH A 115 635 115 HOH HOH . 
F 6 HOH A 116 636 116 HOH HOH . 
F 6 HOH A 117 637 117 HOH HOH . 
F 6 HOH A 118 638 118 HOH HOH . 
F 6 HOH A 119 639 119 HOH HOH . 
F 6 HOH A 120 640 120 HOH HOH . 
F 6 HOH A 121 641 121 HOH HOH . 
F 6 HOH A 122 642 122 HOH HOH . 
F 6 HOH A 123 643 123 HOH HOH . 
F 6 HOH A 124 644 124 HOH HOH . 
F 6 HOH A 125 645 125 HOH HOH . 
F 6 HOH A 126 646 126 HOH HOH . 
F 6 HOH A 127 647 127 HOH HOH . 
F 6 HOH A 128 648 128 HOH HOH . 
F 6 HOH A 129 649 129 HOH HOH . 
F 6 HOH A 130 650 130 HOH HOH . 
F 6 HOH A 131 651 131 HOH HOH . 
F 6 HOH A 132 652 132 HOH HOH . 
F 6 HOH A 133 653 133 HOH HOH . 
F 6 HOH A 134 654 134 HOH HOH . 
F 6 HOH A 135 655 135 HOH HOH . 
F 6 HOH A 136 656 136 HOH HOH . 
F 6 HOH A 137 657 137 HOH HOH . 
F 6 HOH A 138 658 138 HOH HOH . 
F 6 HOH A 139 659 139 HOH HOH . 
F 6 HOH A 140 660 140 HOH HOH . 
F 6 HOH A 141 661 141 HOH HOH . 
F 6 HOH A 142 662 142 HOH HOH . 
F 6 HOH A 143 663 143 HOH HOH . 
F 6 HOH A 144 664 144 HOH HOH . 
F 6 HOH A 145 665 145 HOH HOH . 
F 6 HOH A 146 666 146 HOH HOH . 
F 6 HOH A 147 667 147 HOH HOH . 
F 6 HOH A 148 668 148 HOH HOH . 
F 6 HOH A 149 669 149 HOH HOH . 
F 6 HOH A 150 670 150 HOH HOH . 
F 6 HOH A 151 671 151 HOH HOH . 
F 6 HOH A 152 672 152 HOH HOH . 
F 6 HOH A 153 673 153 HOH HOH . 
F 6 HOH A 154 674 154 HOH HOH . 
F 6 HOH A 155 675 155 HOH HOH . 
F 6 HOH A 156 676 156 HOH HOH . 
F 6 HOH A 157 677 157 HOH HOH . 
F 6 HOH A 158 678 158 HOH HOH . 
F 6 HOH A 159 679 159 HOH HOH . 
F 6 HOH A 160 680 160 HOH HOH . 
F 6 HOH A 161 681 161 HOH HOH . 
F 6 HOH A 162 682 162 HOH HOH . 
F 6 HOH A 163 683 163 HOH HOH . 
F 6 HOH A 164 684 164 HOH HOH . 
F 6 HOH A 165 685 165 HOH HOH . 
F 6 HOH A 166 686 166 HOH HOH . 
F 6 HOH A 167 687 167 HOH HOH . 
F 6 HOH A 168 688 168 HOH HOH . 
F 6 HOH A 169 689 169 HOH HOH . 
F 6 HOH A 170 690 170 HOH HOH . 
F 6 HOH A 171 691 171 HOH HOH . 
F 6 HOH A 172 692 172 HOH HOH . 
F 6 HOH A 173 693 173 HOH HOH . 
F 6 HOH A 174 694 174 HOH HOH . 
F 6 HOH A 175 695 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 4 -7.652 48.04 4.732 1 32.62 ? PB ADP 700 A 1 
HETATM 2 O O1B ADP . . . D 4 -6.554 48.359 5.785 1 25.4 ? O1B ADP 700 A 1 
HETATM 3 O O2B ADP . . . D 4 -8.323 49.199 4.022 1 31.33 ? O2B ADP 700 A 1 
HETATM 4 O O3B ADP . . . D 4 -7.32 46.896 3.746 1 32.06 ? O3B ADP 700 A 1 
HETATM 5 P PA ADP . . . D 4 -10.36 47.657 5.627 1 35.96 ? PA ADP 700 A 1 
HETATM 6 O O1A ADP . . . D 4 -10.793 48.935 6.275 1 38.35 ? O1A ADP 700 A 1 
HETATM 7 O O2A ADP . . . D 4 -10.979 47.361 4.283 1 36.51 ? O2A ADP 700 A 1 
HETATM 8 O O3A ADP . . . D 4 -8.779 47.437 5.715 1 33 ? O3A ADP 700 A 1 
HETATM 9 O O5' ADP . . . D 4 -10.829 46.602 6.756 1 36.33 ? O5' ADP 700 A 1 
HETATM 10 C C5' ADP . . . D 4 -12.107 46.727 7.422 1 36.06 ? C5' ADP 700 A 1 
HETATM 11 C C4' ADP . . . D 4 -12.043 45.961 8.744 1 37.44 ? C4' ADP 700 A 1 
HETATM 12 O O4' ADP . . . D 4 -11.05 46.549 9.61 1 36.86 ? O4' ADP 700 A 1 
HETATM 13 C C3' ADP . . . D 4 -13.341 45.954 9.539 1 38.26 ? C3' ADP 700 A 1 
HETATM 14 O O3' ADP . . . D 4 -13.584 44.58 9.795 1 39.91 ? O3' ADP 700 A 1 
HETATM 15 C C2' ADP . . . D 4 -13.007 46.664 10.849 1 39.66 ? C2' ADP 700 A 1 
HETATM 16 O O2' ADP . . . D 4 -13.477 45.965 11.994 1 42.82 ? O2' ADP 700 A 1 
HETATM 17 C C1' ADP . . . D 4 -11.509 46.538 10.94 1 39.78 ? C1' ADP 700 A 1 
HETATM 18 N N9 ADP . . . D 4 -10.904 47.653 11.667 1 42.86 ? N9 ADP 700 A 1 
HETATM 19 C C8 ADP . . . D 4 -11.452 48.881 11.911 1 42.42 ? C8 ADP 700 A 1 
HETATM 20 N N7 ADP . . . D 4 -10.552 49.636 12.628 1 39.99 ? N7 ADP 700 A 1 
HETATM 21 C C5 ADP . . . D 4 -9.442 48.896 12.843 1 36.59 ? C5 ADP 700 A 1 
HETATM 22 C C6 ADP . . . D 4 -8.158 49.094 13.525 1 40.93 ? C6 ADP 700 A 1 
HETATM 23 N N6 ADP . . . D 4 -7.895 50.268 14.12 1 42.18 ? N6 ADP 700 A 1 
HETATM 24 N N1 ADP . . . D 4 -7.258 48.075 13.549 1 43.33 ? N1 ADP 700 A 1 
HETATM 25 C C2 ADP . . . D 4 -7.553 46.887 12.939 1 41.62 ? C2 ADP 700 A 1 
HETATM 26 N N3 ADP . . . D 4 -8.726 46.647 12.307 1 37.95 ? N3 ADP 700 A 1 
HETATM 27 C C4 ADP . . . D 4 -9.671 47.595 12.222 1 38.6 ? C4 ADP 700 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#