data_3QRD
#
_model_server_result.job_id            4IaW1Iykvp6_RyBvJuOv6w 
_model_server_result.datetime_utc      '2024-12-21 14:32:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qrd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":124}' 
#
_entry.id    3QRD 
#
_exptl.entry_id    3QRD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.03 
_cell.angle_gamma         90 
_cell.entry_id            3QRD 
_cell.length_a            103.123 
_cell.length_b            89.876 
_cell.length_c            65.154 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,K,L 1 1 
C,D,G,H,I,J,M,N 2 1 
A,B,E,F,K,L 3 1,2 
C,D,G,H,I,J,M,N 3 3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 19.081807 0 -62.297097 
3 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -84.041193 0 -62.297097 
4 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 103.123 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 73 A CYS 73 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 97 A CYS 97 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
disulf ? disulf3 B SG CYS 73 B CYS 73 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 97 B CYS 97 1_555 B SG CYS 117 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf5 C SG CYS 73 C CYS 73 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf6 C SG CYS 97 C CYS 97 1_555 C SG CYS 117 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf7 D SG CYS 73 D CYS 73 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf8 D SG CYS 97 D CYS 97 1_555 D SG CYS 117 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     3QRD 
_atom_sites.fract_transf_matrix[1][1]    0.009697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002969 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PEG A 1 121 3 PEG PEG . 
F 2 PEG A 1 122 4 PEG PEG . 
G 2 PEG D 1 121 1 PEG PEG . 
H 2 PEG D 1 122 2 PEG PEG . 
I 2 PEG D 1 123 5 PEG PEG . 
J 2 PEG D 1 124 1 PEG PEG . 
K 3 HOH A 1 123 1 HOH HOH . 
K 3 HOH A 2 124 5 HOH HOH . 
K 3 HOH A 3 125 7 HOH HOH . 
K 3 HOH A 4 126 14 HOH HOH . 
K 3 HOH A 5 127 18 HOH HOH . 
K 3 HOH A 6 128 22 HOH HOH . 
K 3 HOH A 7 129 25 HOH HOH . 
K 3 HOH A 8 130 26 HOH HOH . 
K 3 HOH A 9 131 33 HOH HOH . 
K 3 HOH A 10 132 34 HOH HOH . 
K 3 HOH A 11 133 41 HOH HOH . 
K 3 HOH A 12 134 42 HOH HOH . 
K 3 HOH A 13 135 43 HOH HOH . 
K 3 HOH A 14 136 44 HOH HOH . 
K 3 HOH A 15 137 47 HOH HOH . 
K 3 HOH A 16 138 49 HOH HOH . 
K 3 HOH A 17 139 59 HOH HOH . 
K 3 HOH A 18 141 63 HOH HOH . 
K 3 HOH A 19 143 68 HOH HOH . 
K 3 HOH A 20 144 69 HOH HOH . 
K 3 HOH A 21 145 70 HOH HOH . 
K 3 HOH A 22 147 85 HOH HOH . 
K 3 HOH A 23 149 87 HOH HOH . 
K 3 HOH A 24 151 89 HOH HOH . 
K 3 HOH A 25 152 90 HOH HOH . 
K 3 HOH A 26 154 113 HOH HOH . 
L 3 HOH B 1 121 3 HOH HOH . 
L 3 HOH B 2 122 10 HOH HOH . 
L 3 HOH B 3 123 12 HOH HOH . 
L 3 HOH B 4 124 15 HOH HOH . 
L 3 HOH B 5 125 16 HOH HOH . 
L 3 HOH B 6 126 19 HOH HOH . 
L 3 HOH B 7 127 23 HOH HOH . 
L 3 HOH B 8 128 31 HOH HOH . 
L 3 HOH B 9 129 35 HOH HOH . 
L 3 HOH B 10 130 48 HOH HOH . 
L 3 HOH B 11 132 50 HOH HOH . 
L 3 HOH B 12 133 51 HOH HOH . 
L 3 HOH B 13 134 52 HOH HOH . 
L 3 HOH B 14 135 54 HOH HOH . 
L 3 HOH B 15 136 56 HOH HOH . 
L 3 HOH B 16 137 72 HOH HOH . 
L 3 HOH B 17 138 57 HOH HOH . 
L 3 HOH B 18 139 74 HOH HOH . 
L 3 HOH B 19 140 60 HOH HOH . 
L 3 HOH B 20 141 76 HOH HOH . 
L 3 HOH B 21 142 67 HOH HOH . 
L 3 HOH B 22 143 78 HOH HOH . 
L 3 HOH B 23 144 91 HOH HOH . 
L 3 HOH B 24 145 92 HOH HOH . 
L 3 HOH B 25 146 71 HOH HOH . 
L 3 HOH B 26 147 94 HOH HOH . 
L 3 HOH B 27 148 86 HOH HOH . 
L 3 HOH B 28 149 97 HOH HOH . 
L 3 HOH B 29 150 100 HOH HOH . 
L 3 HOH B 30 151 73 HOH HOH . 
L 3 HOH B 31 152 75 HOH HOH . 
L 3 HOH B 32 153 111 HOH HOH . 
L 3 HOH B 33 154 77 HOH HOH . 
L 3 HOH B 34 155 93 HOH HOH . 
L 3 HOH B 35 156 95 HOH HOH . 
M 3 HOH C 1 121 2 HOH HOH . 
M 3 HOH C 2 122 9 HOH HOH . 
M 3 HOH C 3 123 17 HOH HOH . 
M 3 HOH C 4 124 27 HOH HOH . 
M 3 HOH C 5 125 28 HOH HOH . 
M 3 HOH C 6 126 30 HOH HOH . 
M 3 HOH C 7 127 32 HOH HOH . 
M 3 HOH C 8 128 36 HOH HOH . 
M 3 HOH C 9 129 38 HOH HOH . 
M 3 HOH C 10 130 39 HOH HOH . 
M 3 HOH C 11 131 46 HOH HOH . 
M 3 HOH C 12 132 55 HOH HOH . 
M 3 HOH C 13 133 58 HOH HOH . 
M 3 HOH C 14 134 61 HOH HOH . 
M 3 HOH C 15 135 65 HOH HOH . 
M 3 HOH C 16 136 79 HOH HOH . 
M 3 HOH C 17 137 80 HOH HOH . 
M 3 HOH C 18 138 81 HOH HOH . 
M 3 HOH C 19 139 101 HOH HOH . 
M 3 HOH C 20 140 102 HOH HOH . 
M 3 HOH C 21 141 103 HOH HOH . 
M 3 HOH C 22 142 104 HOH HOH . 
M 3 HOH C 23 143 105 HOH HOH . 
M 3 HOH C 24 144 106 HOH HOH . 
M 3 HOH C 25 145 114 HOH HOH . 
N 3 HOH D 1 125 4 HOH HOH . 
N 3 HOH D 2 126 6 HOH HOH . 
N 3 HOH D 3 127 11 HOH HOH . 
N 3 HOH D 4 128 13 HOH HOH . 
N 3 HOH D 5 129 20 HOH HOH . 
N 3 HOH D 6 130 21 HOH HOH . 
N 3 HOH D 7 131 24 HOH HOH . 
N 3 HOH D 8 132 37 HOH HOH . 
N 3 HOH D 9 133 40 HOH HOH . 
N 3 HOH D 10 134 53 HOH HOH . 
N 3 HOH D 11 135 62 HOH HOH . 
N 3 HOH D 12 136 64 HOH HOH . 
N 3 HOH D 13 137 83 HOH HOH . 
N 3 HOH D 14 138 84 HOH HOH . 
N 3 HOH D 15 139 96 HOH HOH . 
N 3 HOH D 16 140 107 HOH HOH . 
N 3 HOH D 17 141 108 HOH HOH . 
N 3 HOH D 18 142 109 HOH HOH . 
N 3 HOH D 19 143 110 HOH HOH . 
N 3 HOH D 20 144 112 HOH HOH . 
N 3 HOH D 21 145 115 HOH HOH . 
N 3 HOH D 22 150 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . J 2 52.76 -17.963 -11.126 1 74.17 ? C1 PEG 124 D 1 
HETATM 2 O O1 PEG . . . J 2 53.877 -17.255 -11.688 1 66.8 ? O1 PEG 124 D 1 
HETATM 3 C C2 PEG . . . J 2 52.349 -19.13 -12.028 1 63.6 ? C2 PEG 124 D 1 
HETATM 4 O O2 PEG . . . J 2 52.451 -20.395 -11.345 1 77.57 ? O2 PEG 124 D 1 
HETATM 5 C C3 PEG . . . J 2 53.155 -21.42 -12.069 1 41.26 ? C3 PEG 124 D 1 
HETATM 6 C C4 PEG . . . J 2 54.382 -21.932 -11.293 1 71.05 ? C4 PEG 124 D 1 
HETATM 7 O O4 PEG . . . J 2 55.62 -21.812 -12.034 1 50.35 ? O4 PEG 124 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#