data_3QRD # _model_server_result.job_id bfwUEKSXJq3sq1qhR6Nm_A _model_server_result.datetime_utc '2024-11-13 13:31:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":124}' # _entry.id 3QRD # _exptl.entry_id 3QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.03 _cell.angle_gamma 90 _cell.entry_id 3QRD _cell.length_a 103.123 _cell.length_b 89.876 _cell.length_c 65.154 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,K,L 1 1 C,D,G,H,I,J,M,N 2 1 A,B,E,F,K,L 3 1,2 C,D,G,H,I,J,M,N 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 19.081807 0 -62.297097 3 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -84.041193 0 -62.297097 4 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 103.123 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 73 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 97 A CYS 97 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf3 B SG CYS 73 B CYS 73 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 97 B CYS 97 1_555 B SG CYS 117 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf5 C SG CYS 73 C CYS 73 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 C SG CYS 97 C CYS 97 1_555 C SG CYS 117 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf7 D SG CYS 73 D CYS 73 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 D SG CYS 97 D CYS 97 1_555 D SG CYS 117 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 3QRD _atom_sites.fract_transf_matrix[1][1] 0.009697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002969 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PEG A 1 121 3 PEG PEG . F 2 PEG A 1 122 4 PEG PEG . G 2 PEG D 1 121 1 PEG PEG . H 2 PEG D 1 122 2 PEG PEG . I 2 PEG D 1 123 5 PEG PEG . J 2 PEG D 1 124 1 PEG PEG . K 3 HOH A 1 123 1 HOH HOH . K 3 HOH A 2 124 5 HOH HOH . K 3 HOH A 3 125 7 HOH HOH . K 3 HOH A 4 126 14 HOH HOH . K 3 HOH A 5 127 18 HOH HOH . K 3 HOH A 6 128 22 HOH HOH . K 3 HOH A 7 129 25 HOH HOH . K 3 HOH A 8 130 26 HOH HOH . K 3 HOH A 9 131 33 HOH HOH . K 3 HOH A 10 132 34 HOH HOH . K 3 HOH A 11 133 41 HOH HOH . K 3 HOH A 12 134 42 HOH HOH . K 3 HOH A 13 135 43 HOH HOH . K 3 HOH A 14 136 44 HOH HOH . K 3 HOH A 15 137 47 HOH HOH . K 3 HOH A 16 138 49 HOH HOH . K 3 HOH A 17 139 59 HOH HOH . K 3 HOH A 18 141 63 HOH HOH . K 3 HOH A 19 143 68 HOH HOH . K 3 HOH A 20 144 69 HOH HOH . K 3 HOH A 21 145 70 HOH HOH . K 3 HOH A 22 147 85 HOH HOH . K 3 HOH A 23 149 87 HOH HOH . K 3 HOH A 24 151 89 HOH HOH . K 3 HOH A 25 152 90 HOH HOH . K 3 HOH A 26 154 113 HOH HOH . L 3 HOH B 1 121 3 HOH HOH . L 3 HOH B 2 122 10 HOH HOH . L 3 HOH B 3 123 12 HOH HOH . L 3 HOH B 4 124 15 HOH HOH . L 3 HOH B 5 125 16 HOH HOH . L 3 HOH B 6 126 19 HOH HOH . L 3 HOH B 7 127 23 HOH HOH . L 3 HOH B 8 128 31 HOH HOH . L 3 HOH B 9 129 35 HOH HOH . L 3 HOH B 10 130 48 HOH HOH . L 3 HOH B 11 132 50 HOH HOH . L 3 HOH B 12 133 51 HOH HOH . L 3 HOH B 13 134 52 HOH HOH . L 3 HOH B 14 135 54 HOH HOH . L 3 HOH B 15 136 56 HOH HOH . L 3 HOH B 16 137 72 HOH HOH . L 3 HOH B 17 138 57 HOH HOH . L 3 HOH B 18 139 74 HOH HOH . L 3 HOH B 19 140 60 HOH HOH . L 3 HOH B 20 141 76 HOH HOH . L 3 HOH B 21 142 67 HOH HOH . L 3 HOH B 22 143 78 HOH HOH . L 3 HOH B 23 144 91 HOH HOH . L 3 HOH B 24 145 92 HOH HOH . L 3 HOH B 25 146 71 HOH HOH . L 3 HOH B 26 147 94 HOH HOH . L 3 HOH B 27 148 86 HOH HOH . L 3 HOH B 28 149 97 HOH HOH . L 3 HOH B 29 150 100 HOH HOH . L 3 HOH B 30 151 73 HOH HOH . L 3 HOH B 31 152 75 HOH HOH . L 3 HOH B 32 153 111 HOH HOH . L 3 HOH B 33 154 77 HOH HOH . L 3 HOH B 34 155 93 HOH HOH . L 3 HOH B 35 156 95 HOH HOH . M 3 HOH C 1 121 2 HOH HOH . M 3 HOH C 2 122 9 HOH HOH . M 3 HOH C 3 123 17 HOH HOH . M 3 HOH C 4 124 27 HOH HOH . M 3 HOH C 5 125 28 HOH HOH . M 3 HOH C 6 126 30 HOH HOH . M 3 HOH C 7 127 32 HOH HOH . M 3 HOH C 8 128 36 HOH HOH . M 3 HOH C 9 129 38 HOH HOH . M 3 HOH C 10 130 39 HOH HOH . M 3 HOH C 11 131 46 HOH HOH . M 3 HOH C 12 132 55 HOH HOH . M 3 HOH C 13 133 58 HOH HOH . M 3 HOH C 14 134 61 HOH HOH . M 3 HOH C 15 135 65 HOH HOH . M 3 HOH C 16 136 79 HOH HOH . M 3 HOH C 17 137 80 HOH HOH . M 3 HOH C 18 138 81 HOH HOH . M 3 HOH C 19 139 101 HOH HOH . M 3 HOH C 20 140 102 HOH HOH . M 3 HOH C 21 141 103 HOH HOH . M 3 HOH C 22 142 104 HOH HOH . M 3 HOH C 23 143 105 HOH HOH . M 3 HOH C 24 144 106 HOH HOH . M 3 HOH C 25 145 114 HOH HOH . N 3 HOH D 1 125 4 HOH HOH . N 3 HOH D 2 126 6 HOH HOH . N 3 HOH D 3 127 11 HOH HOH . N 3 HOH D 4 128 13 HOH HOH . N 3 HOH D 5 129 20 HOH HOH . N 3 HOH D 6 130 21 HOH HOH . N 3 HOH D 7 131 24 HOH HOH . N 3 HOH D 8 132 37 HOH HOH . N 3 HOH D 9 133 40 HOH HOH . N 3 HOH D 10 134 53 HOH HOH . N 3 HOH D 11 135 62 HOH HOH . N 3 HOH D 12 136 64 HOH HOH . N 3 HOH D 13 137 83 HOH HOH . N 3 HOH D 14 138 84 HOH HOH . N 3 HOH D 15 139 96 HOH HOH . N 3 HOH D 16 140 107 HOH HOH . N 3 HOH D 17 141 108 HOH HOH . N 3 HOH D 18 142 109 HOH HOH . N 3 HOH D 19 143 110 HOH HOH . N 3 HOH D 20 144 112 HOH HOH . N 3 HOH D 21 145 115 HOH HOH . N 3 HOH D 22 150 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . J 2 52.76 -17.963 -11.126 1 74.17 ? C1 PEG 124 D 1 HETATM 2 O O1 PEG . . . J 2 53.877 -17.255 -11.688 1 66.8 ? O1 PEG 124 D 1 HETATM 3 C C2 PEG . . . J 2 52.349 -19.13 -12.028 1 63.6 ? C2 PEG 124 D 1 HETATM 4 O O2 PEG . . . J 2 52.451 -20.395 -11.345 1 77.57 ? O2 PEG 124 D 1 HETATM 5 C C3 PEG . . . J 2 53.155 -21.42 -12.069 1 41.26 ? C3 PEG 124 D 1 HETATM 6 C C4 PEG . . . J 2 54.382 -21.932 -11.293 1 71.05 ? C4 PEG 124 D 1 HETATM 7 O O4 PEG . . . J 2 55.62 -21.812 -12.034 1 50.35 ? O4 PEG 124 D 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #