data_3QRO # _model_server_result.job_id vIttwYLOp-TwY_Zygcssrw _model_server_result.datetime_utc '2024-10-19 01:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":100}' # _entry.id 3QRO # _exptl.entry_id 3QRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QRO _cell.length_a 57.41 _cell.length_b 86.28 _cell.length_c 46.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 145 n n C1 C2 GOL sing 146 n n C1 H11 GOL sing 147 n n C1 H12 GOL sing 148 n n O1 HO1 GOL sing 149 n n C2 O2 GOL sing 150 n n C2 C3 GOL sing 151 n n C2 H2 GOL sing 152 n n O2 HO2 GOL sing 153 n n C3 O3 GOL sing 154 n n C3 H31 GOL sing 155 n n C3 H32 GOL sing 156 n n O3 HO3 GOL sing 157 n n # _atom_sites.entry_id 3QRO _atom_sites.fract_transf_matrix[1][1] 0.017419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NK9 A 1 100 1 NK9 NK9 . D 3 DTD A 1 101 2 DTD DTD . E 4 CL A 1 102 5 CL CL . F 5 GOL B 1 100 3 GOL GOL . G 4 CL B 1 101 4 CL CL . H 4 CL B 1 102 6 CL CL . I 6 HOH A 1 103 103 HOH HOH . I 6 HOH A 2 104 104 HOH HOH . I 6 HOH A 3 105 2 HOH HOH . I 6 HOH A 4 106 106 HOH HOH . I 6 HOH A 5 107 4 HOH HOH . I 6 HOH A 6 108 5 HOH HOH . I 6 HOH A 7 109 109 HOH HOH . I 6 HOH A 8 110 6 HOH HOH . I 6 HOH A 9 111 111 HOH HOH . I 6 HOH A 10 112 112 HOH HOH . I 6 HOH A 11 113 9 HOH HOH . I 6 HOH A 12 114 114 HOH HOH . I 6 HOH A 13 115 12 HOH HOH . I 6 HOH A 14 116 116 HOH HOH . I 6 HOH A 15 117 117 HOH HOH . I 6 HOH A 16 118 118 HOH HOH . I 6 HOH A 17 119 119 HOH HOH . I 6 HOH A 18 120 120 HOH HOH . I 6 HOH A 19 121 13 HOH HOH . I 6 HOH A 20 122 17 HOH HOH . I 6 HOH A 21 123 123 HOH HOH . I 6 HOH A 22 124 124 HOH HOH . I 6 HOH A 23 125 18 HOH HOH . I 6 HOH A 24 126 126 HOH HOH . I 6 HOH A 25 127 20 HOH HOH . I 6 HOH A 26 128 23 HOH HOH . I 6 HOH A 27 129 129 HOH HOH . I 6 HOH A 28 130 130 HOH HOH . I 6 HOH A 29 131 24 HOH HOH . I 6 HOH A 30 132 25 HOH HOH . I 6 HOH A 31 133 31 HOH HOH . I 6 HOH A 32 134 134 HOH HOH . I 6 HOH A 33 135 32 HOH HOH . I 6 HOH A 34 136 34 HOH HOH . I 6 HOH A 35 137 137 HOH HOH . I 6 HOH A 36 138 35 HOH HOH . I 6 HOH A 37 139 39 HOH HOH . I 6 HOH A 38 140 40 HOH HOH . I 6 HOH A 39 141 41 HOH HOH . I 6 HOH A 40 142 46 HOH HOH . I 6 HOH A 41 143 49 HOH HOH . I 6 HOH A 42 144 144 HOH HOH . I 6 HOH A 43 145 51 HOH HOH . I 6 HOH A 44 146 52 HOH HOH . I 6 HOH A 45 147 54 HOH HOH . I 6 HOH A 46 148 56 HOH HOH . I 6 HOH A 47 149 59 HOH HOH . I 6 HOH A 48 150 62 HOH HOH . I 6 HOH A 49 151 63 HOH HOH . I 6 HOH A 50 152 65 HOH HOH . I 6 HOH A 51 153 69 HOH HOH . I 6 HOH A 52 154 70 HOH HOH . I 6 HOH A 53 155 74 HOH HOH . I 6 HOH A 54 156 77 HOH HOH . I 6 HOH A 55 157 78 HOH HOH . I 6 HOH A 56 158 158 HOH HOH . I 6 HOH A 57 159 159 HOH HOH . I 6 HOH A 58 160 79 HOH HOH . I 6 HOH A 59 161 83 HOH HOH . I 6 HOH A 60 162 87 HOH HOH . I 6 HOH A 61 163 88 HOH HOH . I 6 HOH A 62 164 90 HOH HOH . I 6 HOH A 63 165 92 HOH HOH . I 6 HOH A 64 166 100 HOH HOH . I 6 HOH A 65 167 101 HOH HOH . I 6 HOH A 66 168 168 HOH HOH . I 6 HOH A 67 170 170 HOH HOH . I 6 HOH A 68 172 172 HOH HOH . I 6 HOH A 69 174 174 HOH HOH . I 6 HOH A 70 175 175 HOH HOH . I 6 HOH A 71 176 176 HOH HOH . I 6 HOH A 72 178 178 HOH HOH . I 6 HOH A 73 181 181 HOH HOH . I 6 HOH A 74 182 182 HOH HOH . I 6 HOH A 75 183 183 HOH HOH . I 6 HOH A 76 184 184 HOH HOH . I 6 HOH A 77 192 192 HOH HOH . I 6 HOH A 78 197 197 HOH HOH . I 6 HOH A 79 198 198 HOH HOH . I 6 HOH A 80 205 205 HOH HOH . I 6 HOH A 81 206 206 HOH HOH . I 6 HOH A 82 207 207 HOH HOH . I 6 HOH A 83 210 210 HOH HOH . I 6 HOH A 84 214 214 HOH HOH . I 6 HOH A 85 215 215 HOH HOH . I 6 HOH A 86 230 230 HOH HOH . I 6 HOH A 87 237 237 HOH HOH . I 6 HOH A 88 242 242 HOH HOH . I 6 HOH A 89 245 245 HOH HOH . I 6 HOH A 90 249 249 HOH HOH . J 6 HOH B 1 103 1 HOH HOH . J 6 HOH B 2 104 3 HOH HOH . J 6 HOH B 3 105 105 HOH HOH . J 6 HOH B 4 106 7 HOH HOH . J 6 HOH B 5 107 107 HOH HOH . J 6 HOH B 6 108 108 HOH HOH . J 6 HOH B 7 109 8 HOH HOH . J 6 HOH B 8 110 110 HOH HOH . J 6 HOH B 9 111 10 HOH HOH . J 6 HOH B 10 112 11 HOH HOH . J 6 HOH B 11 113 113 HOH HOH . J 6 HOH B 12 114 14 HOH HOH . J 6 HOH B 13 115 115 HOH HOH . J 6 HOH B 14 116 15 HOH HOH . J 6 HOH B 15 117 16 HOH HOH . J 6 HOH B 16 118 19 HOH HOH . J 6 HOH B 17 119 21 HOH HOH . J 6 HOH B 18 120 22 HOH HOH . J 6 HOH B 19 121 121 HOH HOH . J 6 HOH B 20 122 122 HOH HOH . J 6 HOH B 21 123 26 HOH HOH . J 6 HOH B 22 124 27 HOH HOH . J 6 HOH B 23 125 125 HOH HOH . J 6 HOH B 24 126 28 HOH HOH . J 6 HOH B 25 127 127 HOH HOH . J 6 HOH B 26 128 29 HOH HOH . J 6 HOH B 27 129 30 HOH HOH . J 6 HOH B 28 130 33 HOH HOH . J 6 HOH B 29 131 131 HOH HOH . J 6 HOH B 30 132 132 HOH HOH . J 6 HOH B 31 133 133 HOH HOH . J 6 HOH B 32 134 36 HOH HOH . J 6 HOH B 33 135 135 HOH HOH . J 6 HOH B 34 136 136 HOH HOH . J 6 HOH B 35 137 37 HOH HOH . J 6 HOH B 36 138 138 HOH HOH . J 6 HOH B 37 139 139 HOH HOH . J 6 HOH B 38 140 38 HOH HOH . J 6 HOH B 39 141 141 HOH HOH . J 6 HOH B 40 142 142 HOH HOH . J 6 HOH B 41 143 42 HOH HOH . J 6 HOH B 42 144 43 HOH HOH . J 6 HOH B 43 145 145 HOH HOH . J 6 HOH B 44 146 146 HOH HOH . J 6 HOH B 45 147 44 HOH HOH . J 6 HOH B 46 148 148 HOH HOH . J 6 HOH B 47 149 45 HOH HOH . J 6 HOH B 48 150 150 HOH HOH . J 6 HOH B 49 151 47 HOH HOH . J 6 HOH B 50 152 152 HOH HOH . J 6 HOH B 51 153 153 HOH HOH . J 6 HOH B 52 154 48 HOH HOH . J 6 HOH B 53 155 155 HOH HOH . J 6 HOH B 54 156 156 HOH HOH . J 6 HOH B 55 157 157 HOH HOH . J 6 HOH B 56 158 50 HOH HOH . J 6 HOH B 57 159 53 HOH HOH . J 6 HOH B 58 160 160 HOH HOH . J 6 HOH B 59 161 161 HOH HOH . J 6 HOH B 60 162 162 HOH HOH . J 6 HOH B 61 163 55 HOH HOH . J 6 HOH B 62 164 57 HOH HOH . J 6 HOH B 63 165 165 HOH HOH . J 6 HOH B 64 166 58 HOH HOH . J 6 HOH B 65 167 167 HOH HOH . J 6 HOH B 66 168 60 HOH HOH . J 6 HOH B 67 169 61 HOH HOH . J 6 HOH B 68 170 64 HOH HOH . J 6 HOH B 69 171 66 HOH HOH . J 6 HOH B 70 172 67 HOH HOH . J 6 HOH B 71 173 173 HOH HOH . J 6 HOH B 72 174 68 HOH HOH . J 6 HOH B 73 175 71 HOH HOH . J 6 HOH B 74 176 72 HOH HOH . J 6 HOH B 75 177 177 HOH HOH . J 6 HOH B 76 178 73 HOH HOH . J 6 HOH B 77 179 179 HOH HOH . J 6 HOH B 78 180 75 HOH HOH . J 6 HOH B 79 181 76 HOH HOH . J 6 HOH B 80 182 80 HOH HOH . J 6 HOH B 81 183 81 HOH HOH . J 6 HOH B 82 184 82 HOH HOH . J 6 HOH B 83 185 84 HOH HOH . J 6 HOH B 84 186 85 HOH HOH . J 6 HOH B 85 187 86 HOH HOH . J 6 HOH B 86 188 188 HOH HOH . J 6 HOH B 87 189 91 HOH HOH . J 6 HOH B 88 190 93 HOH HOH . J 6 HOH B 89 191 94 HOH HOH . J 6 HOH B 90 192 95 HOH HOH . J 6 HOH B 91 193 193 HOH HOH . J 6 HOH B 92 194 96 HOH HOH . J 6 HOH B 93 195 97 HOH HOH . J 6 HOH B 94 196 98 HOH HOH . J 6 HOH B 95 197 99 HOH HOH . J 6 HOH B 96 198 102 HOH HOH . J 6 HOH B 97 199 89 HOH HOH . J 6 HOH B 98 204 204 HOH HOH . J 6 HOH B 99 208 208 HOH HOH . J 6 HOH B 100 211 211 HOH HOH . J 6 HOH B 101 212 212 HOH HOH . J 6 HOH B 102 213 213 HOH HOH . J 6 HOH B 103 216 216 HOH HOH . J 6 HOH B 104 217 217 HOH HOH . J 6 HOH B 105 218 218 HOH HOH . J 6 HOH B 106 219 219 HOH HOH . J 6 HOH B 107 220 220 HOH HOH . J 6 HOH B 108 229 229 HOH HOH . J 6 HOH B 109 231 231 HOH HOH . J 6 HOH B 110 232 232 HOH HOH . J 6 HOH B 111 235 235 HOH HOH . J 6 HOH B 112 241 241 HOH HOH . J 6 HOH B 113 243 243 HOH HOH . J 6 HOH B 114 246 246 HOH HOH . J 6 HOH B 115 250 250 HOH HOH . J 6 HOH B 116 251 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -14.051 14.152 18.073 1 29.66 ? C1 GOL 100 B 1 HETATM 2 O O1 GOL . . . F 5 -14.665 12.985 18.553 1 25.8 ? O1 GOL 100 B 1 HETATM 3 C C2 GOL . . . F 5 -14.628 14.431 16.698 1 28.75 ? C2 GOL 100 B 1 HETATM 4 O O2 GOL . . . F 5 -14.321 13.362 15.82 1 30.61 ? O2 GOL 100 B 1 HETATM 5 C C3 GOL . . . F 5 -14.031 15.737 16.202 1 22.65 ? C3 GOL 100 B 1 HETATM 6 O O3 GOL . . . F 5 -12.628 15.702 16.349 1 24.72 ? O3 GOL 100 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #