data_3QRX # _model_server_result.job_id -1wamPW3TacqFmm8qAGweg _model_server_result.datetime_utc '2025-03-09 02:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":171}' # _entry.id 3QRX # _exptl.entry_id 3QRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QRX _cell.length_a 52.104 _cell.length_b 114.426 _cell.length_c 34.842 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 114.426 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 38 A ASP 38 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A OD2 ASP 40 A ASP 40 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc3 A OG SER 42 A SER 42 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A O THR 44 A THR 44 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 A OE1 GLU 49 A GLU 49 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 A OE2 GLU 49 A GLU 49 1_555 C CA CA . A CA 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 A OD1 ASP 74 A ASP 74 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 A OD1 ASP 76 A ASP 76 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 A OG SER 78 A SER 78 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 A O THR 80 A THR 80 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc11 A OE2 GLU 85 A GLU 85 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc12 A OE1 GLU 85 A GLU 85 1_555 D CA CA . A CA 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc13 A OD2 ASP 111 A ASP 111 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 A OD1 ASP 113 A ASP 113 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 A OG SER 115 A SER 115 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc16 A O THR 117 A THR 117 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc17 A OD2 ASP 122 A ASP 122 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc18 A OD1 ASP 122 A ASP 122 1_555 E CA CA . A CA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc19 A OD1 ASP 147 A ASP 147 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc20 A OD1 ASN 149 A ASN 149 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc21 A OD2 ASP 151 A ASP 151 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc22 A O GLU 153 A GLU 153 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc23 A OE1 GLU 158 A GLU 158 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc24 A OE2 GLU 158 A GLU 158 1_555 F CA CA . A CA 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc25 D CA CA . A CA 171 1_555 G O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc26 E CA CA . A CA 172 1_555 G O HOH . A HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QRX _atom_sites.fract_transf_matrix[1][1] 0.019193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 170 1 CA CA . D 3 CA A 1 171 2 CA CA . E 3 CA A 1 172 3 CA CA . F 3 CA A 1 173 4 CA CA . G 4 HOH A 1 174 1 HOH HOH . G 4 HOH A 2 175 2 HOH HOH . G 4 HOH A 3 176 3 HOH HOH . G 4 HOH A 4 177 4 HOH HOH . G 4 HOH A 5 178 5 HOH HOH . G 4 HOH A 6 179 6 HOH HOH . G 4 HOH A 7 180 7 HOH HOH . G 4 HOH A 8 181 8 HOH HOH . G 4 HOH A 9 182 9 HOH HOH . G 4 HOH A 10 183 10 HOH HOH . G 4 HOH A 11 184 11 HOH HOH . G 4 HOH A 12 185 12 HOH HOH . G 4 HOH A 13 186 13 HOH HOH . G 4 HOH A 14 187 14 HOH HOH . G 4 HOH A 15 188 15 HOH HOH . G 4 HOH A 16 189 16 HOH HOH . G 4 HOH A 17 190 17 HOH HOH . G 4 HOH A 18 191 18 HOH HOH . G 4 HOH A 19 192 19 HOH HOH . G 4 HOH A 20 193 20 HOH HOH . G 4 HOH A 21 194 22 HOH HOH . G 4 HOH A 22 195 23 HOH HOH . G 4 HOH A 23 196 24 HOH HOH . G 4 HOH A 24 197 25 HOH HOH . G 4 HOH A 25 198 26 HOH HOH . G 4 HOH A 26 199 27 HOH HOH . G 4 HOH A 27 200 28 HOH HOH . G 4 HOH A 28 201 29 HOH HOH . G 4 HOH A 29 202 30 HOH HOH . G 4 HOH A 30 203 31 HOH HOH . G 4 HOH A 31 204 32 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.565 _atom_site.Cartn_y 23.458 _atom_site.Cartn_z 5.976 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 171 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #