data_3QS1 # _model_server_result.job_id LY91jg81ICcGDEWwpPMUhQ _model_server_result.datetime_utc '2025-01-11 08:44:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":330}' # _entry.id 3QS1 # _exptl.entry_id 3QS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.782 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QS1 _cell.length_a 93.69 _cell.length_b 93.69 _cell.length_c 160.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 L N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 45 1_555 A SG CYS 59 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 256 A CYS 249 1_555 A SG CYS 292 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf3 B SG CYS 54 B CYS 45 1_555 B SG CYS 59 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 256 B CYS 249 1_555 B SG CYS 292 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf5 C SG CYS 54 C CYS 45 1_555 C SG CYS 59 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf6 C SG CYS 256 C CYS 249 1_555 C SG CYS 292 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 D SG CYS 54 D CYS 45 1_555 D SG CYS 59 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 D SG CYS 256 D CYS 249 1_555 D SG CYS 292 D CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C35 H41 N3 O6 S' _chem_comp.formula_weight 631.782 _chem_comp.id 006 _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10006 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C48 006 sing 1 n n N2 C20 006 sing 2 n n N2 HN2 006 sing 3 n n C21 C20 006 sing 4 n n C20 C28 006 sing 5 n n C20 H20 006 sing 6 n n C28 O20 006 sing 7 n n O20 HO20 006 sing 8 n n C22 C21 006 sing 9 n n C21 H21 006 sing 10 n n C21 H21A 006 sing 11 n n C29 O21 006 doub 12 n n C27 C22 006 doub 13 n y C22 C23 006 sing 14 n y C24 C23 006 doub 15 n y C23 H23 006 sing 16 n n C25 C24 006 sing 17 n y C24 H24 006 sing 18 n n C26 C25 006 doub 19 n y C25 H25 006 sing 20 n n C26 C27 006 sing 21 n y C26 H26 006 sing 22 n n C27 H27 006 sing 23 n n C29 C28 006 sing 24 n n C28 H28 006 sing 25 n n N50 C29 006 sing 26 n n N30 C31 006 sing 27 n n N30 C55 006 sing 28 n n N30 HN30 006 sing 29 n n C35 O30 006 sing 30 n n O30 HO30 006 sing 31 n n C32 C31 006 sing 32 n n C31 C35 006 sing 33 n n C31 H31 006 sing 34 n n C33 C32 006 doub 35 n y C32 C36 006 sing 36 n y C34 C33 006 sing 37 n y C33 H33 006 sing 38 n n C34 C38 006 doub 39 n y C34 H34 006 sing 40 n n C39 C35 006 sing 41 n n C35 H35 006 sing 42 n n C37 C36 006 doub 43 n y C36 C39 006 sing 44 n n C38 C37 006 sing 45 n y C37 H37 006 sing 46 n n C38 H38 006 sing 47 n n C39 H39 006 sing 48 n n C39 H39A 006 sing 49 n n C40 C47 006 doub 50 n y C40 C41 006 sing 51 n y C40 H40 006 sing 52 n n C48 O40 006 doub 53 n n C41 C42 006 doub 54 n y C41 H41 006 sing 55 n n C45 O41 006 sing 56 n n O41 C49 006 sing 57 n n C42 C45 006 sing 58 n y C42 C43 006 sing 59 n n C43 H43 006 sing 60 n n C43 H43A 006 sing 61 n n C43 H43B 006 sing 62 n n C46 C44 006 sing 63 n n C44 H44 006 sing 64 n n C44 H44A 006 sing 65 n n C44 H44B 006 sing 66 n n C46 C45 006 doub 67 n y C47 C46 006 sing 68 n y C47 H47 006 sing 69 n n C49 C48 006 sing 70 n n C49 H49 006 sing 71 n n C49 H49A 006 sing 72 n n S50 C50 006 sing 73 n n C50 N50 006 sing 74 n n C50 H50 006 sing 75 n n C50 H50A 006 sing 76 n n C54 N50 006 sing 77 n n O50 C55 006 doub 78 n n C51 S50 006 sing 79 n n C53 C51 006 sing 80 n n C51 C54 006 sing 81 n n C51 C52 006 sing 82 n n C52 H52 006 sing 83 n n C52 H52A 006 sing 84 n n C52 H52B 006 sing 85 n n C53 H53 006 sing 86 n n C53 H53A 006 sing 87 n n C53 H53B 006 sing 88 n n C55 C54 006 sing 89 n n C54 H54 006 sing 90 n n # _atom_sites.entry_id 3QS1 _atom_sites.fract_transf_matrix[1][1] 0.010673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 006 A 1 330 1 006 DRG . F 3 GOL A 1 331 308 GOL GOL . G 3 GOL A 1 332 309 GOL GOL . H 3 GOL A 1 333 312 GOL GOL . I 2 006 B 1 330 2 006 DRG . J 3 GOL B 1 331 306 GOL GOL . K 3 GOL B 1 332 316 GOL GOL . L 2 006 C 1 330 3 006 DRG . M 3 GOL C 1 331 307 GOL GOL . N 3 GOL C 1 332 311 GOL GOL . O 3 GOL C 1 333 315 GOL GOL . P 2 006 D 1 330 4 006 DRG . Q 3 GOL D 1 331 310 GOL GOL . R 3 GOL D 1 332 313 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 006 . . . E 2 28.528 -9.392 5.404 1 72.25 ? N2 006 330 A 1 HETATM 2 C C20 006 . . . E 2 27.105 -9.359 5.174 1 67.06 ? C20 006 330 A 1 HETATM 3 O O20 006 . . . E 2 26.482 -7.128 4.849 1 66.75 ? O20 006 330 A 1 HETATM 4 C C21 006 . . . E 2 26.611 -8.818 6.483 1 67.7 ? C21 006 330 A 1 HETATM 5 O O21 006 . . . E 2 24.626 -8.18 3.731 1 64.81 ? O21 006 330 A 1 HETATM 6 C C22 006 . . . E 2 26.749 -9.923 7.477 1 69.49 ? C22 006 330 A 1 HETATM 7 C C23 006 . . . E 2 27.54 -9.72 8.594 1 69.27 ? C23 006 330 A 1 HETATM 8 C C24 006 . . . E 2 27.663 -10.776 9.49 1 70.87 ? C24 006 330 A 1 HETATM 9 C C25 006 . . . E 2 27.023 -12.009 9.289 1 69.68 ? C25 006 330 A 1 HETATM 10 C C26 006 . . . E 2 26.241 -12.2 8.169 1 70.53 ? C26 006 330 A 1 HETATM 11 C C27 006 . . . E 2 26.106 -11.154 7.254 1 71.3 ? C27 006 330 A 1 HETATM 12 C C28 006 . . . E 2 26.863 -8.305 4.151 1 65.78 ? C28 006 330 A 1 HETATM 13 C C29 006 . . . E 2 25.66 -8.68 3.377 1 64.29 ? C29 006 330 A 1 HETATM 14 N N30 006 . . . E 2 22.729 -11.297 2.347 1 60.53 ? N30 006 330 A 1 HETATM 15 O O30 006 . . . E 2 20.395 -11.402 2.088 1 61.83 ? O30 006 330 A 1 HETATM 16 C C31 006 . . . E 2 22.239 -12.6 2.787 1 61.28 ? C31 006 330 A 1 HETATM 17 C C32 006 . . . E 2 21.991 -12.652 4.241 1 63.27 ? C32 006 330 A 1 HETATM 18 C C33 006 . . . E 2 22.886 -12.267 5.269 1 64.6 ? C33 006 330 A 1 HETATM 19 C C34 006 . . . E 2 22.5 -12.357 6.605 1 61.91 ? C34 006 330 A 1 HETATM 20 C C35 006 . . . E 2 20.823 -12.747 2.26 1 60.28 ? C35 006 330 A 1 HETATM 21 C C36 006 . . . E 2 20.74 -13.13 4.522 1 62.07 ? C36 006 330 A 1 HETATM 22 C C37 006 . . . E 2 20.331 -13.216 5.854 1 63.52 ? C37 006 330 A 1 HETATM 23 C C38 006 . . . E 2 21.21 -12.828 6.879 1 63.07 ? C38 006 330 A 1 HETATM 24 C C39 006 . . . E 2 19.944 -13.453 3.293 1 58.8 ? C39 006 330 A 1 HETATM 25 C C40 006 . . . E 2 35.654 -9.196 6.488 1 87.19 ? C40 006 330 A 1 HETATM 26 O O40 006 . . . E 2 28.521 -11.5 4.724 1 77.01 ? O40 006 330 A 1 HETATM 27 C C41 006 . . . E 2 35.124 -8.625 5.363 1 87.77 ? C41 006 330 A 1 HETATM 28 O O41 006 . . . E 2 31.435 -9.407 5.742 1 82.84 ? O41 006 330 A 1 HETATM 29 C C42 006 . . . E 2 33.752 -8.689 5.118 1 89.09 ? C42 006 330 A 1 HETATM 30 C C43 006 . . . E 2 33.339 -8.012 3.832 1 92.09 ? C43 006 330 A 1 HETATM 31 C C44 006 . . . E 2 32.613 -10.647 8.189 1 89.31 ? C44 006 330 A 1 HETATM 32 C C45 006 . . . E 2 32.837 -9.349 5.985 1 87.67 ? C45 006 330 A 1 HETATM 33 C C46 006 . . . E 2 33.419 -9.921 7.136 1 88.21 ? C46 006 330 A 1 HETATM 34 C C47 006 . . . E 2 34.794 -9.836 7.365 1 87.6 ? C47 006 330 A 1 HETATM 35 C C48 006 . . . E 2 29.176 -10.531 5.16 1 77.22 ? C48 006 330 A 1 HETATM 36 C C49 006 . . . E 2 30.7 -10.616 5.442 1 79.17 ? C49 006 330 A 1 HETATM 37 C C50 006 . . . E 2 26.964 -10.185 1.888 1 63.33 ? C50 006 330 A 1 HETATM 38 N N50 006 . . . E 2 25.755 -9.531 2.372 1 63.54 ? N50 006 330 A 1 HETATM 39 O O50 006 . . . E 2 24.752 -12.055 2.205 1 60.61 ? O50 006 330 A 1 HETATM 40 S S50 006 . . . E 2 26.573 -10.696 0.283 1 63.49 ? S50 006 330 A 1 HETATM 41 C C51 006 . . . E 2 25.057 -9.808 0.147 1 62.94 ? C51 006 330 A 1 HETATM 42 C C52 006 . . . E 2 24.162 -10.347 -0.986 1 60.91 ? C52 006 330 A 1 HETATM 43 C C53 006 . . . E 2 25.339 -8.346 -0.164 1 61.57 ? C53 006 330 A 1 HETATM 44 C C54 006 . . . E 2 24.566 -9.862 1.613 1 62.32 ? C54 006 330 A 1 HETATM 45 C C55 006 . . . E 2 24.004 -11.156 2.08 1 61.07 ? C55 006 330 A 1 # _model_server_stats.io_time_ms 140 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #