data_3QS1 # _model_server_result.job_id -c4SfIm5YTNc6LVtwiBV6Q _model_server_result.datetime_utc '2025-01-11 09:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":330}' # _entry.id 3QS1 # _exptl.entry_id 3QS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.782 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QS1 _cell.length_a 93.69 _cell.length_b 93.69 _cell.length_c 160.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 L N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 45 1_555 A SG CYS 59 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 256 A CYS 249 1_555 A SG CYS 292 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf3 B SG CYS 54 B CYS 45 1_555 B SG CYS 59 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 256 B CYS 249 1_555 B SG CYS 292 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf5 C SG CYS 54 C CYS 45 1_555 C SG CYS 59 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf6 C SG CYS 256 C CYS 249 1_555 C SG CYS 292 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 D SG CYS 54 D CYS 45 1_555 D SG CYS 59 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 D SG CYS 256 D CYS 249 1_555 D SG CYS 292 D CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C35 H41 N3 O6 S' _chem_comp.formula_weight 631.782 _chem_comp.id 006 _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10006 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C48 006 sing 1 n n N2 C20 006 sing 2 n n N2 HN2 006 sing 3 n n C21 C20 006 sing 4 n n C20 C28 006 sing 5 n n C20 H20 006 sing 6 n n C28 O20 006 sing 7 n n O20 HO20 006 sing 8 n n C22 C21 006 sing 9 n n C21 H21 006 sing 10 n n C21 H21A 006 sing 11 n n C29 O21 006 doub 12 n n C27 C22 006 doub 13 n y C22 C23 006 sing 14 n y C24 C23 006 doub 15 n y C23 H23 006 sing 16 n n C25 C24 006 sing 17 n y C24 H24 006 sing 18 n n C26 C25 006 doub 19 n y C25 H25 006 sing 20 n n C26 C27 006 sing 21 n y C26 H26 006 sing 22 n n C27 H27 006 sing 23 n n C29 C28 006 sing 24 n n C28 H28 006 sing 25 n n N50 C29 006 sing 26 n n N30 C31 006 sing 27 n n N30 C55 006 sing 28 n n N30 HN30 006 sing 29 n n C35 O30 006 sing 30 n n O30 HO30 006 sing 31 n n C32 C31 006 sing 32 n n C31 C35 006 sing 33 n n C31 H31 006 sing 34 n n C33 C32 006 doub 35 n y C32 C36 006 sing 36 n y C34 C33 006 sing 37 n y C33 H33 006 sing 38 n n C34 C38 006 doub 39 n y C34 H34 006 sing 40 n n C39 C35 006 sing 41 n n C35 H35 006 sing 42 n n C37 C36 006 doub 43 n y C36 C39 006 sing 44 n n C38 C37 006 sing 45 n y C37 H37 006 sing 46 n n C38 H38 006 sing 47 n n C39 H39 006 sing 48 n n C39 H39A 006 sing 49 n n C40 C47 006 doub 50 n y C40 C41 006 sing 51 n y C40 H40 006 sing 52 n n C48 O40 006 doub 53 n n C41 C42 006 doub 54 n y C41 H41 006 sing 55 n n C45 O41 006 sing 56 n n O41 C49 006 sing 57 n n C42 C45 006 sing 58 n y C42 C43 006 sing 59 n n C43 H43 006 sing 60 n n C43 H43A 006 sing 61 n n C43 H43B 006 sing 62 n n C46 C44 006 sing 63 n n C44 H44 006 sing 64 n n C44 H44A 006 sing 65 n n C44 H44B 006 sing 66 n n C46 C45 006 doub 67 n y C47 C46 006 sing 68 n y C47 H47 006 sing 69 n n C49 C48 006 sing 70 n n C49 H49 006 sing 71 n n C49 H49A 006 sing 72 n n S50 C50 006 sing 73 n n C50 N50 006 sing 74 n n C50 H50 006 sing 75 n n C50 H50A 006 sing 76 n n C54 N50 006 sing 77 n n O50 C55 006 doub 78 n n C51 S50 006 sing 79 n n C53 C51 006 sing 80 n n C51 C54 006 sing 81 n n C51 C52 006 sing 82 n n C52 H52 006 sing 83 n n C52 H52A 006 sing 84 n n C52 H52B 006 sing 85 n n C53 H53 006 sing 86 n n C53 H53A 006 sing 87 n n C53 H53B 006 sing 88 n n C55 C54 006 sing 89 n n C54 H54 006 sing 90 n n # _atom_sites.entry_id 3QS1 _atom_sites.fract_transf_matrix[1][1] 0.010673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 006 A 1 330 1 006 DRG . F 3 GOL A 1 331 308 GOL GOL . G 3 GOL A 1 332 309 GOL GOL . H 3 GOL A 1 333 312 GOL GOL . I 2 006 B 1 330 2 006 DRG . J 3 GOL B 1 331 306 GOL GOL . K 3 GOL B 1 332 316 GOL GOL . L 2 006 C 1 330 3 006 DRG . M 3 GOL C 1 331 307 GOL GOL . N 3 GOL C 1 332 311 GOL GOL . O 3 GOL C 1 333 315 GOL GOL . P 2 006 D 1 330 4 006 DRG . Q 3 GOL D 1 331 310 GOL GOL . R 3 GOL D 1 332 313 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 006 . . . I 2 27.523 -37.911 8.468 1 78.4 ? N2 006 330 B 1 HETATM 2 C C20 006 . . . I 2 26.29 -37.749 7.693 1 77.32 ? C20 006 330 B 1 HETATM 3 O O20 006 . . . I 2 25.119 -39.933 7.587 1 74.75 ? O20 006 330 B 1 HETATM 4 C C21 006 . . . I 2 26.599 -38.178 6.273 1 79.14 ? C21 006 330 B 1 HETATM 5 O O21 006 . . . I 2 23.063 -38.354 7.485 1 75.08 ? O21 006 330 B 1 HETATM 6 C C22 006 . . . I 2 27.19 -37.018 5.548 1 80.39 ? C22 006 330 B 1 HETATM 7 C C23 006 . . . I 2 28.563 -36.937 5.411 1 81.71 ? C23 006 330 B 1 HETATM 8 C C24 006 . . . I 2 29.092 -35.848 4.742 1 83.57 ? C24 006 330 B 1 HETATM 9 C C25 006 . . . I 2 28.239 -34.865 4.22 1 84.4 ? C25 006 330 B 1 HETATM 10 C C26 006 . . . I 2 26.857 -34.944 4.351 1 82.62 ? C26 006 330 B 1 HETATM 11 C C27 006 . . . I 2 26.348 -36.041 5.034 1 82.34 ? C27 006 330 B 1 HETATM 12 C C28 006 . . . I 2 25.269 -38.701 8.299 1 74.36 ? C28 006 330 B 1 HETATM 13 C C29 006 . . . I 2 23.902 -38.095 8.338 1 73.67 ? C29 006 330 B 1 HETATM 14 N N30 006 . . . I 2 21.034 -35.311 8.025 1 71.09 ? N30 006 330 B 1 HETATM 15 O O30 006 . . . I 2 18.902 -35.163 6.179 1 63.95 ? O30 006 330 B 1 HETATM 16 C C31 006 . . . I 2 20.784 -34.091 7.242 1 68.13 ? C31 006 330 B 1 HETATM 17 C C32 006 . . . I 2 21.404 -34.006 5.911 1 65.13 ? C32 006 330 B 1 HETATM 18 C C33 006 . . . I 2 22.622 -34.495 5.502 1 62.65 ? C33 006 330 B 1 HETATM 19 C C34 006 . . . I 2 22.999 -34.278 4.204 1 61.11 ? C34 006 330 B 1 HETATM 20 C C35 006 . . . I 2 19.321 -33.972 6.839 1 65.26 ? C35 006 330 B 1 HETATM 21 C C36 006 . . . I 2 20.591 -33.325 5.089 1 64.53 ? C36 006 330 B 1 HETATM 22 C C37 006 . . . I 2 20.938 -33.102 3.782 1 64.06 ? C37 006 330 B 1 HETATM 23 C C38 006 . . . I 2 22.165 -33.58 3.358 1 62.9 ? C38 006 330 B 1 HETATM 24 C C39 006 . . . I 2 19.322 -32.91 5.775 1 65.01 ? C39 006 330 B 1 HETATM 25 C C40 006 . . . I 2 34.226 -37.338 11.278 1 91.31 ? C40 006 330 B 1 HETATM 26 O O40 006 . . . I 2 28.064 -35.71 8.797 1 78.13 ? O40 006 330 B 1 HETATM 27 C C41 006 . . . I 2 33.864 -36.391 10.32 1 90.84 ? C41 006 330 B 1 HETATM 28 O O41 006 . . . I 2 30.676 -37.782 9.018 1 85.42 ? O41 006 330 B 1 HETATM 29 C C42 006 . . . I 2 32.7 -36.512 9.553 1 89.08 ? C42 006 330 B 1 HETATM 30 C C43 006 . . . I 2 32.434 -35.395 8.555 1 86.9 ? C43 006 330 B 1 HETATM 31 C C44 006 . . . I 2 31.449 -39.86 11.062 1 90.85 ? C44 006 330 B 1 HETATM 32 C C45 006 . . . I 2 31.865 -37.645 9.745 1 88.82 ? C45 006 330 B 1 HETATM 33 C C46 006 . . . I 2 32.245 -38.608 10.73 1 90.4 ? C46 006 330 B 1 HETATM 34 C C47 006 . . . I 2 33.415 -38.447 11.476 1 90.73 ? C47 006 330 B 1 HETATM 35 C C48 006 . . . I 2 28.292 -36.905 8.922 1 79.58 ? C48 006 330 B 1 HETATM 36 C C49 006 . . . I 2 29.502 -37.326 9.714 1 82.05 ? C49 006 330 B 1 HETATM 37 C C50 006 . . . I 2 24.613 -36.961 10.428 1 72.4 ? C50 006 330 B 1 HETATM 38 N N50 006 . . . I 2 23.66 -37.312 9.373 1 73.03 ? N50 006 330 B 1 HETATM 39 O O50 006 . . . I 2 23.055 -34.666 8.703 1 71.4 ? O50 006 330 B 1 HETATM 40 S S50 006 . . . I 2 23.702 -36.122 11.653 1 73.64 ? S50 006 330 B 1 HETATM 41 C C51 006 . . . I 2 22.12 -36.454 11.014 1 72.29 ? C51 006 330 B 1 HETATM 42 C C52 006 . . . I 2 21.155 -35.327 11.36 1 71.82 ? C52 006 330 B 1 HETATM 43 C C53 006 . . . I 2 21.688 -37.734 11.675 1 72.25 ? C53 006 330 B 1 HETATM 44 C C54 006 . . . I 2 22.337 -36.718 9.515 1 72.25 ? C54 006 330 B 1 HETATM 45 C C55 006 . . . I 2 22.166 -35.478 8.703 1 71.23 ? C55 006 330 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #