data_3QS1
#
_model_server_result.job_id            QQ8C831vMY2MwnE3QejsGg 
_model_server_result.datetime_utc      '2025-07-18 12:11:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qs1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":330}' 
#
_entry.id    3QS1 
#
_exptl.entry_id    3QS1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              631.782 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QS1 
_cell.length_a            93.69 
_cell.length_b            93.69 
_cell.length_c            160.12 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 L N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 45 1_555 A SG CYS 59 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 A SG CYS 256 A CYS 249 1_555 A SG CYS 292 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
disulf ? disulf3 B SG CYS 54 B CYS 45 1_555 B SG CYS 59 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 B SG CYS 256 B CYS 249 1_555 B SG CYS 292 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf5 C SG CYS 54 C CYS 45 1_555 C SG CYS 59 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf6 C SG CYS 256 C CYS 249 1_555 C SG CYS 292 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf7 D SG CYS 54 D CYS 45 1_555 D SG CYS 59 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf8 D SG CYS 256 D CYS 249 1_555 D SG CYS 292 D CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
#
_chem_comp.formula           'C35 H41 N3 O6 S' 
_chem_comp.formula_weight    631.782 
_chem_comp.id                006 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     KNI-10006 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C48 006 sing 1 n n 
N2 C20 006 sing 2 n n 
N2 HN2 006 sing 3 n n 
C21 C20 006 sing 4 n n 
C20 C28 006 sing 5 n n 
C20 H20 006 sing 6 n n 
C28 O20 006 sing 7 n n 
O20 HO20 006 sing 8 n n 
C22 C21 006 sing 9 n n 
C21 H21 006 sing 10 n n 
C21 H21A 006 sing 11 n n 
C29 O21 006 doub 12 n n 
C27 C22 006 doub 13 n y 
C22 C23 006 sing 14 n y 
C24 C23 006 doub 15 n y 
C23 H23 006 sing 16 n n 
C25 C24 006 sing 17 n y 
C24 H24 006 sing 18 n n 
C26 C25 006 doub 19 n y 
C25 H25 006 sing 20 n n 
C26 C27 006 sing 21 n y 
C26 H26 006 sing 22 n n 
C27 H27 006 sing 23 n n 
C29 C28 006 sing 24 n n 
C28 H28 006 sing 25 n n 
N50 C29 006 sing 26 n n 
N30 C31 006 sing 27 n n 
N30 C55 006 sing 28 n n 
N30 HN30 006 sing 29 n n 
C35 O30 006 sing 30 n n 
O30 HO30 006 sing 31 n n 
C32 C31 006 sing 32 n n 
C31 C35 006 sing 33 n n 
C31 H31 006 sing 34 n n 
C33 C32 006 doub 35 n y 
C32 C36 006 sing 36 n y 
C34 C33 006 sing 37 n y 
C33 H33 006 sing 38 n n 
C34 C38 006 doub 39 n y 
C34 H34 006 sing 40 n n 
C39 C35 006 sing 41 n n 
C35 H35 006 sing 42 n n 
C37 C36 006 doub 43 n y 
C36 C39 006 sing 44 n n 
C38 C37 006 sing 45 n y 
C37 H37 006 sing 46 n n 
C38 H38 006 sing 47 n n 
C39 H39 006 sing 48 n n 
C39 H39A 006 sing 49 n n 
C40 C47 006 doub 50 n y 
C40 C41 006 sing 51 n y 
C40 H40 006 sing 52 n n 
C48 O40 006 doub 53 n n 
C41 C42 006 doub 54 n y 
C41 H41 006 sing 55 n n 
C45 O41 006 sing 56 n n 
O41 C49 006 sing 57 n n 
C42 C45 006 sing 58 n y 
C42 C43 006 sing 59 n n 
C43 H43 006 sing 60 n n 
C43 H43A 006 sing 61 n n 
C43 H43B 006 sing 62 n n 
C46 C44 006 sing 63 n n 
C44 H44 006 sing 64 n n 
C44 H44A 006 sing 65 n n 
C44 H44B 006 sing 66 n n 
C46 C45 006 doub 67 n y 
C47 C46 006 sing 68 n y 
C47 H47 006 sing 69 n n 
C49 C48 006 sing 70 n n 
C49 H49 006 sing 71 n n 
C49 H49A 006 sing 72 n n 
S50 C50 006 sing 73 n n 
C50 N50 006 sing 74 n n 
C50 H50 006 sing 75 n n 
C50 H50A 006 sing 76 n n 
C54 N50 006 sing 77 n n 
O50 C55 006 doub 78 n n 
C51 S50 006 sing 79 n n 
C53 C51 006 sing 80 n n 
C51 C54 006 sing 81 n n 
C51 C52 006 sing 82 n n 
C52 H52 006 sing 83 n n 
C52 H52A 006 sing 84 n n 
C52 H52B 006 sing 85 n n 
C53 H53 006 sing 86 n n 
C53 H53A 006 sing 87 n n 
C53 H53B 006 sing 88 n n 
C55 C54 006 sing 89 n n 
C54 H54 006 sing 90 n n 
#
_atom_sites.entry_id                     3QS1 
_atom_sites.fract_transf_matrix[1][1]    0.010673 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 006 A 1 330 1 006 DRG . 
F 3 GOL A 1 331 308 GOL GOL . 
G 3 GOL A 1 332 309 GOL GOL . 
H 3 GOL A 1 333 312 GOL GOL . 
I 2 006 B 1 330 2 006 DRG . 
J 3 GOL B 1 331 306 GOL GOL . 
K 3 GOL B 1 332 316 GOL GOL . 
L 2 006 C 1 330 3 006 DRG . 
M 3 GOL C 1 331 307 GOL GOL . 
N 3 GOL C 1 332 311 GOL GOL . 
O 3 GOL C 1 333 315 GOL GOL . 
P 2 006 D 1 330 4 006 DRG . 
Q 3 GOL D 1 331 310 GOL GOL . 
R 3 GOL D 1 332 313 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 006 . . . L 2 -28.643 -10.808 -9.228 1 71.82 ? N2 006 330 C 1 
HETATM 2 C C20 006 . . . L 2 -27.208 -10.942 -8.96 1 68.76 ? C20 006 330 C 1 
HETATM 3 O O20 006 . . . L 2 -26.46 -8.701 -8.804 1 67.96 ? O20 006 330 C 1 
HETATM 4 C C21 006 . . . L 2 -26.408 -10.863 -10.263 1 67.88 ? C21 006 330 C 1 
HETATM 5 O O21 006 . . . L 2 -24.655 -9.93 -7.712 1 70.87 ? O21 006 330 C 1 
HETATM 6 C C22 006 . . . L 2 -26.615 -12.112 -11.105 1 67.9 ? C22 006 330 C 1 
HETATM 7 C C23 006 . . . L 2 -27.373 -12.08 -12.276 1 69.4 ? C23 006 330 C 1 
HETATM 8 C C24 006 . . . L 2 -27.561 -13.238 -13.05 1 68.31 ? C24 006 330 C 1 
HETATM 9 C C25 006 . . . L 2 -26.971 -14.432 -12.678 1 66.11 ? C25 006 330 C 1 
HETATM 10 C C26 006 . . . L 2 -26.215 -14.456 -11.529 1 64.92 ? C26 006 330 C 1 
HETATM 11 C C27 006 . . . L 2 -26.061 -13.325 -10.747 1 66.55 ? C27 006 330 C 1 
HETATM 12 C C28 006 . . . L 2 -26.908 -9.794 -8.038 1 68.08 ? C28 006 330 C 1 
HETATM 13 C C29 006 . . . L 2 -25.743 -10.145 -7.207 1 68.91 ? C29 006 330 C 1 
HETATM 14 N N30 006 . . . L 2 -22.879 -12.521 -5.389 1 69.19 ? N30 006 330 C 1 
HETATM 15 O O30 006 . . . L 2 -20.078 -12.681 -5.193 1 71.06 ? O30 006 330 C 1 
HETATM 16 C C31 006 . . . L 2 -22.239 -13.816 -5.741 1 69.43 ? C31 006 330 C 1 
HETATM 17 C C32 006 . . . L 2 -22.045 -14.153 -7.162 1 70.12 ? C32 006 330 C 1 
HETATM 18 C C33 006 . . . L 2 -22.949 -13.949 -8.2 1 68.86 ? C33 006 330 C 1 
HETATM 19 C C34 006 . . . L 2 -22.534 -14.347 -9.465 1 69.93 ? C34 006 330 C 1 
HETATM 20 C C35 006 . . . L 2 -20.781 -13.923 -5.22 1 69.09 ? C35 006 330 C 1 
HETATM 21 C C36 006 . . . L 2 -20.811 -14.752 -7.36 1 70.71 ? C36 006 330 C 1 
HETATM 22 C C37 006 . . . L 2 -20.381 -15.152 -8.622 1 71.46 ? C37 006 330 C 1 
HETATM 23 C C38 006 . . . L 2 -21.272 -14.937 -9.677 1 71.73 ? C38 006 330 C 1 
HETATM 24 C C39 006 . . . L 2 -20.006 -14.883 -6.103 1 68.65 ? C39 006 330 C 1 
HETATM 25 C C40 006 . . . L 2 -35.787 -10.494 -9.625 1 82.28 ? C40 006 330 C 1 
HETATM 26 O O40 006 . . . L 2 -28.76 -12.768 -8.251 1 77.84 ? O40 006 330 C 1 
HETATM 27 C C41 006 . . . L 2 -35.141 -11.38 -10.453 1 82.62 ? C41 006 330 C 1 
HETATM 28 O O41 006 . . . L 2 -31.572 -10.849 -9.568 1 83.25 ? O41 006 330 C 1 
HETATM 29 C C42 006 . . . L 2 -33.78 -11.536 -10.461 1 83.1 ? C42 006 330 C 1 
HETATM 30 C C43 006 . . . L 2 -33.269 -12.57 -11.424 1 84.96 ? C43 006 330 C 1 
HETATM 31 C C44 006 . . . L 2 -32.869 -8.984 -7.824 1 87.47 ? C44 006 330 C 1 
HETATM 32 C C45 006 . . . L 2 -32.976 -10.769 -9.62 1 84.03 ? C45 006 330 C 1 
HETATM 33 C C46 006 . . . L 2 -33.638 -9.865 -8.792 1 85.71 ? C46 006 330 C 1 
HETATM 34 C C47 006 . . . L 2 -35.022 -9.736 -8.792 1 84.23 ? C47 006 330 C 1 
HETATM 35 C C48 006 . . . L 2 -29.359 -11.847 -8.795 1 76.41 ? C48 006 330 C 1 
HETATM 36 C C49 006 . . . L 2 -30.879 -11.955 -8.949 1 79.17 ? C49 006 330 C 1 
HETATM 37 C C50 006 . . . L 2 -27.244 -10.898 -5.353 1 68.9 ? C50 006 330 C 1 
HETATM 38 N N50 006 . . . L 2 -25.942 -10.646 -5.981 1 68.9 ? N50 006 330 C 1 
HETATM 39 O O50 006 . . . L 2 -24.961 -13.161 -5.932 1 69.78 ? O50 006 330 C 1 
HETATM 40 S S50 006 . . . L 2 -26.937 -11.499 -3.747 1 68.24 ? S50 006 330 C 1 
HETATM 41 C C51 006 . . . L 2 -25.248 -11.017 -3.655 1 68.13 ? C51 006 330 C 1 
HETATM 42 C C52 006 . . . L 2 -24.455 -11.989 -2.811 1 66.79 ? C52 006 330 C 1 
HETATM 43 C C53 006 . . . L 2 -25.169 -9.617 -3.071 1 67.39 ? C53 006 330 C 1 
HETATM 44 C C54 006 . . . L 2 -24.794 -10.998 -5.108 1 68.58 ? C54 006 330 C 1 
HETATM 45 C C55 006 . . . L 2 -24.201 -12.318 -5.496 1 69.03 ? C55 006 330 C 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#