data_3QS4 # _model_server_result.job_id WT1mTu3MrzCs-wMYleDp5Q _model_server_result.datetime_utc '2024-10-14 07:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 3QS4 # _exptl.entry_id 3QS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.63 _cell.angle_gamma 90 _cell.entry_id 3QS4 _cell.length_a 90.219 _cell.length_b 86.595 _cell.length_c 82.058 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -85.023656 0 -81.893368 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A O THR 254 A THR 254 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc11 B OXT TRP . A TRP 601 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3QS4 _atom_sites.fract_transf_matrix[1][1] 0.011084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRP A 1 601 601 TRP TRP . C 2 TRP A 1 602 602 TRP TRP . D 2 TRP A 1 603 603 TRP TRP . E 3 BOG A 1 701 701 BOG BOG . F 3 BOG A 1 702 702 BOG BOG . G 3 BOG A 1 703 703 BOG BOG . H 4 NA A 1 751 751 NA NA . I 4 NA A 1 752 752 NA NA . J 5 HOH A 1 800 800 HOH HOH . J 5 HOH A 2 801 801 HOH HOH . J 5 HOH A 3 802 802 HOH HOH . J 5 HOH A 4 803 803 HOH HOH . J 5 HOH A 5 804 804 HOH HOH . J 5 HOH A 6 805 805 HOH HOH . J 5 HOH A 7 806 806 HOH HOH . J 5 HOH A 8 807 807 HOH HOH . J 5 HOH A 9 808 808 HOH HOH . J 5 HOH A 10 809 809 HOH HOH . J 5 HOH A 11 810 810 HOH HOH . J 5 HOH A 12 811 811 HOH HOH . J 5 HOH A 13 812 812 HOH HOH . J 5 HOH A 14 813 813 HOH HOH . J 5 HOH A 15 814 814 HOH HOH . J 5 HOH A 16 815 815 HOH HOH . J 5 HOH A 17 816 816 HOH HOH . J 5 HOH A 18 817 817 HOH HOH . J 5 HOH A 19 818 818 HOH HOH . J 5 HOH A 20 819 819 HOH HOH . J 5 HOH A 21 820 820 HOH HOH . J 5 HOH A 22 821 821 HOH HOH . J 5 HOH A 23 822 822 HOH HOH . J 5 HOH A 24 823 823 HOH HOH . J 5 HOH A 25 824 824 HOH HOH . J 5 HOH A 26 825 825 HOH HOH . J 5 HOH A 27 826 826 HOH HOH . J 5 HOH A 28 827 827 HOH HOH . J 5 HOH A 29 828 828 HOH HOH . J 5 HOH A 30 829 829 HOH HOH . J 5 HOH A 31 830 830 HOH HOH . J 5 HOH A 32 831 831 HOH HOH . J 5 HOH A 33 832 832 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 3 -56.174 -18.34 -16.742 1 107.53 ? C1 BOG 702 A 1 HETATM 2 O O1 BOG . . . F 3 -55.998 -17.119 -16.029 1 97.36 ? O1 BOG 702 A 1 HETATM 3 C C2 BOG . . . F 3 -56.745 -19.409 -15.822 1 114.53 ? C2 BOG 702 A 1 HETATM 4 O O2 BOG . . . F 3 -55.826 -19.665 -14.755 1 110.64 ? O2 BOG 702 A 1 HETATM 5 C C3 BOG . . . F 3 -56.983 -20.69 -16.607 1 109.59 ? C3 BOG 702 A 1 HETATM 6 O O3 BOG . . . F 3 -57.638 -21.653 -15.775 1 95.35 ? O3 BOG 702 A 1 HETATM 7 C C4 BOG . . . F 3 -57.843 -20.402 -17.829 1 96.96 ? C4 BOG 702 A 1 HETATM 8 O O4 BOG . . . F 3 -57.911 -21.574 -18.646 1 100.62 ? O4 BOG 702 A 1 HETATM 9 C C5 BOG . . . F 3 -57.25 -19.261 -18.644 1 102.52 ? C5 BOG 702 A 1 HETATM 10 O O5 BOG . . . F 3 -57.084 -18.111 -17.816 1 106.72 ? O5 BOG 702 A 1 HETATM 11 C C6 BOG . . . F 3 -58.152 -18.912 -19.823 1 107.18 ? C6 BOG 702 A 1 HETATM 12 O O6 BOG . . . F 3 -59.375 -18.347 -19.339 1 103.8 ? O6 BOG 702 A 1 HETATM 13 C C1' BOG . . . F 3 -54.921 -16.359 -16.571 1 95.54 ? C1' BOG 702 A 1 HETATM 14 C C2' BOG . . . F 3 -55.285 -14.879 -16.557 1 89.64 ? C2' BOG 702 A 1 HETATM 15 C C3' BOG . . . F 3 -55.017 -14.243 -15.2 1 83.59 ? C3' BOG 702 A 1 HETATM 16 C C4' BOG . . . F 3 -54.097 -13.036 -15.337 1 84.35 ? C4' BOG 702 A 1 HETATM 17 C C5' BOG . . . F 3 -54.277 -12.089 -14.156 1 78.94 ? C5' BOG 702 A 1 HETATM 18 C C6' BOG . . . F 3 -53.121 -12.205 -13.171 1 77.11 ? C6' BOG 702 A 1 HETATM 19 C C7' BOG . . . F 3 -52.035 -11.179 -13.473 1 81.59 ? C7' BOG 702 A 1 HETATM 20 C C8' BOG . . . F 3 -52.509 -9.778 -13.154 1 85.33 ? C8' BOG 702 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #