data_3QS4 # _model_server_result.job_id 0Fz5Al1oREKvzlWy8oJQ_A _model_server_result.datetime_utc '2024-11-25 01:50:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":751}' # _entry.id 3QS4 # _exptl.entry_id 3QS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.63 _cell.angle_gamma 90 _cell.entry_id 3QS4 _cell.length_a 90.219 _cell.length_b 86.595 _cell.length_c 82.058 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -85.023656 0 -81.893368 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A O THR 254 A THR 254 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 H NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc11 B OXT TRP . A TRP 601 1_555 I NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QS4 _atom_sites.fract_transf_matrix[1][1] 0.011084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRP A 1 601 601 TRP TRP . C 2 TRP A 1 602 602 TRP TRP . D 2 TRP A 1 603 603 TRP TRP . E 3 BOG A 1 701 701 BOG BOG . F 3 BOG A 1 702 702 BOG BOG . G 3 BOG A 1 703 703 BOG BOG . H 4 NA A 1 751 751 NA NA . I 4 NA A 1 752 752 NA NA . J 5 HOH A 1 800 800 HOH HOH . J 5 HOH A 2 801 801 HOH HOH . J 5 HOH A 3 802 802 HOH HOH . J 5 HOH A 4 803 803 HOH HOH . J 5 HOH A 5 804 804 HOH HOH . J 5 HOH A 6 805 805 HOH HOH . J 5 HOH A 7 806 806 HOH HOH . J 5 HOH A 8 807 807 HOH HOH . J 5 HOH A 9 808 808 HOH HOH . J 5 HOH A 10 809 809 HOH HOH . J 5 HOH A 11 810 810 HOH HOH . J 5 HOH A 12 811 811 HOH HOH . J 5 HOH A 13 812 812 HOH HOH . J 5 HOH A 14 813 813 HOH HOH . J 5 HOH A 15 814 814 HOH HOH . J 5 HOH A 16 815 815 HOH HOH . J 5 HOH A 17 816 816 HOH HOH . J 5 HOH A 18 817 817 HOH HOH . J 5 HOH A 19 818 818 HOH HOH . J 5 HOH A 20 819 819 HOH HOH . J 5 HOH A 21 820 820 HOH HOH . J 5 HOH A 22 821 821 HOH HOH . J 5 HOH A 23 822 822 HOH HOH . J 5 HOH A 24 823 823 HOH HOH . J 5 HOH A 25 824 824 HOH HOH . J 5 HOH A 26 825 825 HOH HOH . J 5 HOH A 27 826 826 HOH HOH . J 5 HOH A 28 827 827 HOH HOH . J 5 HOH A 29 828 828 HOH HOH . J 5 HOH A 30 829 829 HOH HOH . J 5 HOH A 31 830 830 HOH HOH . J 5 HOH A 32 831 831 HOH HOH . J 5 HOH A 33 832 832 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -30.841 _atom_site.Cartn_y -2.124 _atom_site.Cartn_z -15.082 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 751 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #