data_3QS5 # _model_server_result.job_id QFd4UmPjab_pWIfNJNH-NA _model_server_result.datetime_utc '2024-10-14 05:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qs5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3QS5 # _exptl.entry_id 3QS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.75 _cell.angle_gamma 90 _cell.entry_id 3QS5 _cell.length_a 90.928 _cell.length_b 87.09 _cell.length_c 81.867 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 84.14874 0 81.585828 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A O THR 254 A THR 254 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc11 B OXT TRP . A TRP 601 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 341 n n N H TRP sing 342 n n N H2 TRP sing 343 n n CA C TRP sing 344 n n CA CB TRP sing 345 n n CA HA TRP sing 346 n n C O TRP doub 347 n n C OXT TRP sing 348 n n CB CG TRP sing 349 n n CB HB2 TRP sing 350 n n CB HB3 TRP sing 351 n n CG CD1 TRP doub 352 n y CG CD2 TRP sing 353 n y CD1 NE1 TRP sing 354 n y CD1 HD1 TRP sing 355 n n CD2 CE2 TRP doub 356 n y CD2 CE3 TRP sing 357 n y NE1 CE2 TRP sing 358 n y NE1 HE1 TRP sing 359 n n CE2 CZ2 TRP sing 360 n y CE3 CZ3 TRP doub 361 n y CE3 HE3 TRP sing 362 n n CZ2 CH2 TRP doub 363 n y CZ2 HZ2 TRP sing 364 n n CZ3 CH2 TRP sing 365 n y CZ3 HZ3 TRP sing 366 n n CH2 HH2 TRP sing 367 n n OXT HXT TRP sing 368 n n # _atom_sites.entry_id 3QS5 _atom_sites.fract_transf_matrix[1][1] 0.010998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000913 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRP A 1 601 601 TRP TRP . C 3 NA A 1 751 751 NA NA . D 3 NA A 1 752 752 NA NA . E 4 BOG A 1 702 702 BOG BOG . F 4 BOG A 1 703 703 BOG BOG . G 4 BOG A 1 704 704 BOG BOG . H 5 HOH A 1 520 1 HOH HOH . H 5 HOH A 2 521 2 HOH HOH . H 5 HOH A 3 522 3 HOH HOH . H 5 HOH A 4 523 4 HOH HOH . H 5 HOH A 5 524 5 HOH HOH . H 5 HOH A 6 525 6 HOH HOH . H 5 HOH A 7 526 7 HOH HOH . H 5 HOH A 8 527 8 HOH HOH . H 5 HOH A 9 528 9 HOH HOH . H 5 HOH A 10 529 10 HOH HOH . H 5 HOH A 11 530 11 HOH HOH . H 5 HOH A 12 531 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . B 2 26.442 30.755 19.745 1 39.33 ? N TRP 601 A 1 HETATM 2 C CA TRP . . . B 2 27.706 30.077 19.468 1 41.43 ? CA TRP 601 A 1 HETATM 3 C C TRP . . . B 2 27.512 28.925 18.466 1 31.65 ? C TRP 601 A 1 HETATM 4 O O TRP . . . B 2 28.375 28.1 18.139 1 37.02 ? O TRP 601 A 1 HETATM 5 C CB TRP . . . B 2 28.319 29.582 20.776 1 49.66 ? CB TRP 601 A 1 HETATM 6 C CG TRP . . . B 2 28.209 30.562 21.891 1 35.02 ? CG TRP 601 A 1 HETATM 7 C CD1 TRP . . . B 2 27.601 30.37 23.096 1 34.89 ? CD1 TRP 601 A 1 HETATM 8 C CD2 TRP . . . B 2 28.733 31.889 21.91 1 46.87 ? CD2 TRP 601 A 1 HETATM 9 N NE1 TRP . . . B 2 27.717 31.499 23.868 1 34.27 ? NE1 TRP 601 A 1 HETATM 10 C CE2 TRP . . . B 2 28.409 32.448 23.161 1 43.83 ? CE2 TRP 601 A 1 HETATM 11 C CE3 TRP . . . B 2 29.446 32.661 20.988 1 44.37 ? CE3 TRP 601 A 1 HETATM 12 C CZ2 TRP . . . B 2 28.775 33.746 23.513 1 30.32 ? CZ2 TRP 601 A 1 HETATM 13 C CZ3 TRP . . . B 2 29.809 33.947 21.338 1 35.95 ? CZ3 TRP 601 A 1 HETATM 14 C CH2 TRP . . . B 2 29.473 34.478 22.589 1 43.97 ? CH2 TRP 601 A 1 HETATM 15 O OXT TRP . . . B 2 26.42 28.793 17.942 1 48.2 ? OXT TRP 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #