data_3QS7
#
_model_server_result.job_id            EHNUJSpXivExa_JKskWGKA 
_model_server_result.datetime_utc      '2024-12-21 16:52:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qs7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":504}' 
#
_entry.id    3QS7 
#
_exptl.entry_id    3QS7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.66 
_cell.angle_gamma         90 
_cell.entry_id            3QS7 
_cell.length_a            103.89 
_cell.length_b            146.26 
_cell.length_c            105.95 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QS7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J,K,L 1 1 
C,D,G,H,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 4 1_555 A SG CYS 89 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 48 A CYS 44 1_555 A SG CYS 131 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 97 A CYS 93 1_555 A SG CYS 136 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 8 B CYS 4 1_555 B SG CYS 89 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 48 B CYS 44 1_555 B SG CYS 131 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 97 B CYS 93 1_555 B SG CYS 136 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf7 C SG CYS 8 C CYS 4 1_555 C SG CYS 89 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 48 C CYS 44 1_555 C SG CYS 131 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf9 C SG CYS 97 C CYS 93 1_555 C SG CYS 136 C CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 D SG CYS 8 D CYS 4 1_555 D SG CYS 89 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 D SG CYS 48 D CYS 44 1_555 D SG CYS 131 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 D SG CYS 97 D CYS 93 1_555 D SG CYS 136 D CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf13 E SG CYS 80 E CYS 103 1_555 E SG CYS 91 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf14 E SG CYS 161 E CYS 184 1_555 E SG CYS 208 E CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf15 E SG CYS 209 E CYS 232 1_555 E SG CYS 218 E CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf16 E SG CYS 249 E CYS 272 1_555 E SG CYS 307 E CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 E SG CYS 345 E CYS 368 1_555 E SG CYS 384 E CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf18 E SG CYS 358 E CYS 381 1_555 E SG CYS 369 E CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf19 F SG CYS 80 F CYS 103 1_555 F SG CYS 91 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf20 F SG CYS 161 F CYS 184 1_555 F SG CYS 208 F CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf21 F SG CYS 209 F CYS 232 1_555 F SG CYS 218 F CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf22 F SG CYS 249 F CYS 272 1_555 F SG CYS 307 F CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf23 F SG CYS 345 F CYS 368 1_555 F SG CYS 384 F CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf24 F SG CYS 358 F CYS 381 1_555 F SG CYS 369 F CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf25 G SG CYS 161 G CYS 184 1_555 G SG CYS 208 G CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf26 G SG CYS 209 G CYS 232 1_555 G SG CYS 218 G CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf27 G SG CYS 249 G CYS 272 1_555 G SG CYS 307 G CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf28 H SG CYS 161 H CYS 184 1_555 H SG CYS 208 H CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf29 H SG CYS 209 H CYS 232 1_555 H SG CYS 218 H CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf30 H SG CYS 249 H CYS 272 1_555 H SG CYS 307 H CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf31 H SG CYS 345 H CYS 368 1_555 H SG CYS 384 H CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf32 H SG CYS 358 H CYS 381 1_555 H SG CYS 369 H CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 E ND2 ASN 300 E ASN 323 1_555 I C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 F ND2 ASN 300 F ASN 323 1_555 J C1 NAG . F NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale3 F ND2 ASN 328 F ASN 351 1_555 L C1 NAG . F NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale4 F ND2 ASN 331 F ASN 354 1_555 K C1 NAG . F NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 G ND2 ASN 283 G ASN 306 1_555 M C1 NAG . G NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
covale ? covale6 H ND2 ASN 328 H ASN 351 1_555 O C1 NAG . H NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale7 H ND2 ASN 331 H ASN 354 1_555 N C1 NAG . H NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3QS7 
_atom_sites.fract_transf_matrix[1][1]    0.009626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003439 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006837 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010023 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 NAG E 1 501 501 NAG NAG . 
J 3 NAG F 1 501 501 NAG NAG . 
K 3 NAG F 1 503 503 NAG NAG . 
L 3 NAG F 1 504 504 NAG NAG . 
M 3 NAG G 1 500 500 NAG NAG . 
N 3 NAG H 1 503 503 NAG NAG . 
O 3 NAG H 1 504 504 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 3 -64.026 -16.122 -77.683 1 173.47 ? C1 NAG 504 H 1 
HETATM 2 C C2 NAG . . . O 3 -63.197 -17.441 -77.658 1 173.47 ? C2 NAG 504 H 1 
HETATM 3 C C3 NAG . . . O 3 -63.087 -18.016 -79.092 1 173.47 ? C3 NAG 504 H 1 
HETATM 4 C C4 NAG . . . O 3 -64.462 -18.095 -79.806 1 173.47 ? C4 NAG 504 H 1 
HETATM 5 C C5 NAG . . . O 3 -65.205 -16.747 -79.674 1 173.47 ? C5 NAG 504 H 1 
HETATM 6 C C6 NAG . . . O 3 -66.629 -16.809 -80.257 1 173.47 ? C6 NAG 504 H 1 
HETATM 7 C C7 NAG . . . O 3 -61.346 -18.139 -76.101 1 173.47 ? C7 NAG 504 H 1 
HETATM 8 C C8 NAG . . . O 3 -59.971 -17.761 -75.621 1 173.47 ? C8 NAG 504 H 1 
HETATM 9 N N2 NAG . . . O 3 -61.868 -17.282 -77.039 1 173.47 ? N2 NAG 504 H 1 
HETATM 10 O O3 NAG . . . O 3 -62.473 -19.316 -79.031 1 173.47 ? O3 NAG 504 H 1 
HETATM 11 O O4 NAG . . . O 3 -64.25 -18.376 -81.202 1 173.47 ? O4 NAG 504 H 1 
HETATM 12 O O5 NAG . . . O 3 -65.306 -16.343 -78.291 1 173.47 ? O5 NAG 504 H 1 
HETATM 13 O O6 NAG . . . O 3 -66.607 -16.698 -81.683 1 173.47 ? O6 NAG 504 H 1 
HETATM 14 O O7 NAG . . . O 3 -61.941 -19.136 -75.683 1 173.47 ? O7 NAG 504 H 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#