data_3QSI # _model_server_result.job_id VA4roHkEkR4LwIoIlvWLbQ _model_server_result.datetime_utc '2024-10-18 16:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":9}' # _entry.id 3QSI # _exptl.entry_id 3QSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.28 _cell.angle_gamma 90 _cell.entry_id 3QSI _cell.length_a 147.379 _cell.length_b 79.4 _cell.length_c 122.423 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,K,L,M,N,O,P 1 1 E,F,G,H,Q,R,S,T,U,V,W 2 1 I,J,X 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 81.998107 0 103.502318 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 V N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K NI NI . B NI 5 1_555 A NE2 HIS 14 B HIS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 K NI NI . B NI 5 1_555 A NE2 HIS 41 B HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 K NI NI . B NI 5 1_555 D NE2 HIS 28 A HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A NE2 HIS 28 B HIS 88 1_555 P NI NI . A NI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 M NI NI . C NI 4 1_555 B NE2 HIS 39 C HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc6 M NI NI . C NI 4 1_555 B ND1 HIS 41 C HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc7 M NI NI . C NI 4 1_555 B SG CYS 47 C CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc8 M NI NI . C NI 4 1_555 C NE2 HIS 28 D HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc9 B NE2 HIS 28 C HIS 88 1_555 O NI NI . D NI 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc10 O NI NI . D NI 7 1_555 C NE2 HIS 14 D HIS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc11 O NI NI . D NI 7 1_555 C NE2 HIS 41 D HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 P NI NI . A NI 3 1_555 D NE2 HIS 39 A HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 P NI NI . A NI 3 1_555 D ND1 HIS 41 A HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc14 P NI NI . A NI 3 1_555 D SG CYS 47 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 Q NI NI . F NI 6 1_555 E NE2 HIS 14 F HIS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc16 Q NI NI . F NI 6 1_555 E NE2 HIS 41 F HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 Q NI NI . F NI 6 1_555 H NE2 HIS 28 E HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc18 E NE2 HIS 28 F HIS 88 1_555 V NI NI . E NI 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc19 T O4 SO4 . G SO4 1 1_555 U NI NI . H NI 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc20 S NI NI . G NI 2 1_555 F NE2 HIS 39 G HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc21 S NI NI . G NI 2 1_555 F ND1 HIS 41 G HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc22 S NI NI . G NI 2 1_555 F SG CYS 47 G CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc23 S NI NI . G NI 2 1_555 G NE2 HIS 28 H HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc24 F NE2 HIS 28 G HIS 88 1_555 U NI NI . H NI 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc25 U NI NI . H NI 9 1_555 G NE2 HIS 14 H HIS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc26 U NI NI . H NI 9 1_555 G NE2 HIS 41 H HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc27 V NI NI . E NI 8 1_555 H NE2 HIS 39 E HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc28 V NI NI . E NI 8 1_555 H ND1 HIS 41 E HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 V NI NI . E NI 8 1_555 H SG CYS 47 E CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc30 X NI NI . I NI 1 1_555 J NE2 HIS 39 I HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc31 X NI NI . I NI 1 1_555 J ND1 HIS 41 I HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc32 X NI NI . I NI 1 1_555 J SG CYS 47 I CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QSI _atom_sites.fract_transf_matrix[1][1] 0.006785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 NI B 1 5 5 NI NI . L 3 SO4 B 1 4 4 SO4 SO4 . M 2 NI C 1 4 4 NI NI . N 3 SO4 C 1 5 5 SO4 SO4 . O 2 NI D 1 7 7 NI NI . P 2 NI A 1 3 3 NI NI . Q 2 NI F 1 6 6 NI NI . R 3 SO4 F 1 2 2 SO4 SO4 . S 2 NI G 1 2 2 NI NI . T 3 SO4 G 1 1 1 SO4 SO4 . U 2 NI H 1 9 9 NI NI . V 2 NI E 1 8 8 NI NI . W 3 SO4 E 1 3 3 SO4 SO4 . X 2 NI I 1 1 1 NI NI . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.416 _atom_site.Cartn_y -5.303 _atom_site.Cartn_z -9.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 9 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #