data_3QTC # _model_server_result.job_id Mxc2fO-Ko0jIQrlBYIrk8w _model_server_result.datetime_utc '2025-01-10 20:07:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":815}' # _entry.id 3QTC # _exptl.entry_id 3QTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QTC _cell.length_a 104.809 _cell.length_b 104.809 _cell.length_c 71.674 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -52.4045 -90.767257 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 232 A GLU 396 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc2 A OG SER 235 A SER 399 1_555 C MG MG . A MG 801 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 K O HOH . A HOH 487 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 K O HOH . A HOH 490 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc5 K O HOH . A HOH 492 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc6 K O HOH . A HOH 494 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 K O HOH . A HOH 498 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc8 K O HOH . A HOH 521 1_555 C MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 B MG MG . A MG 800 1_555 J O1G ANP . A ANP 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc10 B MG MG . A MG 800 1_555 J O2B ANP . A ANP 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 C MG MG . A MG 801 1_555 J O1B ANP . A ANP 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc12 C MG MG . A MG 801 1_555 J O2A ANP . A ANP 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 160 n n C1 C2 EDO sing 161 n n C1 H11 EDO sing 162 n n C1 H12 EDO sing 163 n n O1 HO1 EDO sing 164 n n C2 O2 EDO sing 165 n n C2 H21 EDO sing 166 n n C2 H22 EDO sing 167 n n O2 HO2 EDO sing 168 n n # _atom_sites.entry_id 3QTC _atom_sites.fract_transf_matrix[1][1] 0.009541 _atom_sites.fract_transf_matrix[1][2] 0.005509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 800 800 MG MG . C 2 MG A 1 801 801 MG MG . D 3 0A1 A 1 811 811 0A1 0A1 . E 4 EDO A 1 812 812 EDO EDO . F 4 EDO A 1 813 813 EDO EDO . G 4 EDO A 1 814 814 EDO EDO . H 4 EDO A 1 815 815 EDO EDO . I 4 EDO A 1 817 817 EDO EDO . J 5 ANP A 1 810 810 ANP ANP . K 6 HOH A 1 1 1 HOH HOH . K 6 HOH A 2 2 2 HOH HOH . K 6 HOH A 3 3 3 HOH HOH . K 6 HOH A 4 4 4 HOH HOH . K 6 HOH A 5 5 5 HOH HOH . K 6 HOH A 6 6 6 HOH HOH . K 6 HOH A 7 7 7 HOH HOH . K 6 HOH A 8 8 8 HOH HOH . K 6 HOH A 9 9 9 HOH HOH . K 6 HOH A 10 10 10 HOH HOH . K 6 HOH A 11 11 11 HOH HOH . K 6 HOH A 12 12 12 HOH HOH . K 6 HOH A 13 13 13 HOH HOH . K 6 HOH A 14 14 14 HOH HOH . K 6 HOH A 15 15 15 HOH HOH . K 6 HOH A 16 17 17 HOH HOH . K 6 HOH A 17 18 18 HOH HOH . K 6 HOH A 18 19 19 HOH HOH . K 6 HOH A 19 20 20 HOH HOH . K 6 HOH A 20 22 22 HOH HOH . K 6 HOH A 21 23 23 HOH HOH . K 6 HOH A 22 24 24 HOH HOH . K 6 HOH A 23 25 25 HOH HOH . K 6 HOH A 24 26 26 HOH HOH . K 6 HOH A 25 27 27 HOH HOH . K 6 HOH A 26 28 28 HOH HOH . K 6 HOH A 27 30 30 HOH HOH . K 6 HOH A 28 31 31 HOH HOH . K 6 HOH A 29 32 32 HOH HOH . K 6 HOH A 30 35 35 HOH HOH . K 6 HOH A 31 36 36 HOH HOH . K 6 HOH A 32 37 37 HOH HOH . K 6 HOH A 33 38 38 HOH HOH . K 6 HOH A 34 39 39 HOH HOH . K 6 HOH A 35 40 40 HOH HOH . K 6 HOH A 36 41 41 HOH HOH . K 6 HOH A 37 42 42 HOH HOH . K 6 HOH A 38 43 43 HOH HOH . K 6 HOH A 39 44 44 HOH HOH . K 6 HOH A 40 45 45 HOH HOH . K 6 HOH A 41 46 46 HOH HOH . K 6 HOH A 42 47 47 HOH HOH . K 6 HOH A 43 48 48 HOH HOH . K 6 HOH A 44 49 49 HOH HOH . K 6 HOH A 45 50 50 HOH HOH . K 6 HOH A 46 51 51 HOH HOH . K 6 HOH A 47 53 53 HOH HOH . K 6 HOH A 48 54 54 HOH HOH . K 6 HOH A 49 57 57 HOH HOH . K 6 HOH A 50 58 58 HOH HOH . K 6 HOH A 51 59 59 HOH HOH . K 6 HOH A 52 61 61 HOH HOH . K 6 HOH A 53 62 62 HOH HOH . K 6 HOH A 54 63 63 HOH HOH . K 6 HOH A 55 64 64 HOH HOH . K 6 HOH A 56 66 66 HOH HOH . K 6 HOH A 57 67 67 HOH HOH . K 6 HOH A 58 68 68 HOH HOH . K 6 HOH A 59 69 69 HOH HOH . K 6 HOH A 60 70 70 HOH HOH . K 6 HOH A 61 71 71 HOH HOH . K 6 HOH A 62 72 72 HOH HOH . K 6 HOH A 63 74 74 HOH HOH . K 6 HOH A 64 75 75 HOH HOH . K 6 HOH A 65 76 76 HOH HOH . K 6 HOH A 66 78 78 HOH HOH . K 6 HOH A 67 79 79 HOH HOH . K 6 HOH A 68 80 80 HOH HOH . K 6 HOH A 69 81 81 HOH HOH . K 6 HOH A 70 82 82 HOH HOH . K 6 HOH A 71 83 83 HOH HOH . K 6 HOH A 72 84 84 HOH HOH . K 6 HOH A 73 85 85 HOH HOH . K 6 HOH A 74 87 87 HOH HOH . K 6 HOH A 75 89 89 HOH HOH . K 6 HOH A 76 90 90 HOH HOH . K 6 HOH A 77 91 91 HOH HOH . K 6 HOH A 78 93 93 HOH HOH . K 6 HOH A 79 94 94 HOH HOH . K 6 HOH A 80 95 95 HOH HOH . K 6 HOH A 81 96 96 HOH HOH . K 6 HOH A 82 97 97 HOH HOH . K 6 HOH A 83 98 98 HOH HOH . K 6 HOH A 84 100 100 HOH HOH . K 6 HOH A 85 101 101 HOH HOH . K 6 HOH A 86 102 102 HOH HOH . K 6 HOH A 87 105 105 HOH HOH . K 6 HOH A 88 106 106 HOH HOH . K 6 HOH A 89 109 109 HOH HOH . K 6 HOH A 90 110 110 HOH HOH . K 6 HOH A 91 111 111 HOH HOH . K 6 HOH A 92 112 112 HOH HOH . K 6 HOH A 93 113 113 HOH HOH . K 6 HOH A 94 114 114 HOH HOH . K 6 HOH A 95 115 115 HOH HOH . K 6 HOH A 96 116 116 HOH HOH . K 6 HOH A 97 117 117 HOH HOH . K 6 HOH A 98 120 120 HOH HOH . K 6 HOH A 99 124 124 HOH HOH . K 6 HOH A 100 125 125 HOH HOH . K 6 HOH A 101 126 126 HOH HOH . K 6 HOH A 102 127 127 HOH HOH . K 6 HOH A 103 128 128 HOH HOH . K 6 HOH A 104 129 129 HOH HOH . K 6 HOH A 105 130 130 HOH HOH . K 6 HOH A 106 131 131 HOH HOH . K 6 HOH A 107 132 132 HOH HOH . K 6 HOH A 108 134 134 HOH HOH . K 6 HOH A 109 135 135 HOH HOH . K 6 HOH A 110 136 136 HOH HOH . K 6 HOH A 111 137 137 HOH HOH . K 6 HOH A 112 138 138 HOH HOH . K 6 HOH A 113 139 139 HOH HOH . K 6 HOH A 114 141 141 HOH HOH . K 6 HOH A 115 144 144 HOH HOH . K 6 HOH A 116 145 145 HOH HOH . K 6 HOH A 117 146 146 HOH HOH . K 6 HOH A 118 147 147 HOH HOH . K 6 HOH A 119 149 149 HOH HOH . K 6 HOH A 120 150 150 HOH HOH . K 6 HOH A 121 151 151 HOH HOH . K 6 HOH A 122 152 152 HOH HOH . K 6 HOH A 123 153 153 HOH HOH . K 6 HOH A 124 154 154 HOH HOH . K 6 HOH A 125 155 155 HOH HOH . K 6 HOH A 126 156 156 HOH HOH . K 6 HOH A 127 158 158 HOH HOH . K 6 HOH A 128 159 159 HOH HOH . K 6 HOH A 129 163 163 HOH HOH . K 6 HOH A 130 164 164 HOH HOH . K 6 HOH A 131 455 165 HOH HOH . K 6 HOH A 132 456 166 HOH HOH . K 6 HOH A 133 457 171 HOH HOH . K 6 HOH A 134 458 172 HOH HOH . K 6 HOH A 135 459 174 HOH HOH . K 6 HOH A 136 460 175 HOH HOH . K 6 HOH A 137 461 176 HOH HOH . K 6 HOH A 138 462 178 HOH HOH . K 6 HOH A 139 463 179 HOH HOH . K 6 HOH A 140 464 181 HOH HOH . K 6 HOH A 141 465 183 HOH HOH . K 6 HOH A 142 466 184 HOH HOH . K 6 HOH A 143 467 186 HOH HOH . K 6 HOH A 144 468 189 HOH HOH . K 6 HOH A 145 469 190 HOH HOH . K 6 HOH A 146 470 191 HOH HOH . K 6 HOH A 147 471 194 HOH HOH . K 6 HOH A 148 472 195 HOH HOH . K 6 HOH A 149 473 196 HOH HOH . K 6 HOH A 150 474 197 HOH HOH . K 6 HOH A 151 475 204 HOH HOH . K 6 HOH A 152 476 205 HOH HOH . K 6 HOH A 153 477 207 HOH HOH . K 6 HOH A 154 478 209 HOH HOH . K 6 HOH A 155 479 211 HOH HOH . K 6 HOH A 156 480 212 HOH HOH . K 6 HOH A 157 481 214 HOH HOH . K 6 HOH A 158 482 216 HOH HOH . K 6 HOH A 159 483 219 HOH HOH . K 6 HOH A 160 484 227 HOH HOH . K 6 HOH A 161 485 231 HOH HOH . K 6 HOH A 162 486 239 HOH HOH . K 6 HOH A 163 487 256 HOH HOH . K 6 HOH A 164 488 267 HOH HOH . K 6 HOH A 165 489 279 HOH HOH . K 6 HOH A 166 490 286 HOH HOH . K 6 HOH A 167 491 292 HOH HOH . K 6 HOH A 168 492 304 HOH HOH . K 6 HOH A 169 493 307 HOH HOH . K 6 HOH A 170 494 313 HOH HOH . K 6 HOH A 171 495 314 HOH HOH . K 6 HOH A 172 496 317 HOH HOH . K 6 HOH A 173 497 331 HOH HOH . K 6 HOH A 174 498 332 HOH HOH . K 6 HOH A 175 499 333 HOH HOH . K 6 HOH A 176 500 334 HOH HOH . K 6 HOH A 177 501 336 HOH HOH . K 6 HOH A 178 502 337 HOH HOH . K 6 HOH A 179 503 338 HOH HOH . K 6 HOH A 180 504 339 HOH HOH . K 6 HOH A 181 505 340 HOH HOH . K 6 HOH A 182 506 341 HOH HOH . K 6 HOH A 183 507 342 HOH HOH . K 6 HOH A 184 508 347 HOH HOH . K 6 HOH A 185 509 348 HOH HOH . K 6 HOH A 186 510 349 HOH HOH . K 6 HOH A 187 511 350 HOH HOH . K 6 HOH A 188 512 352 HOH HOH . K 6 HOH A 189 513 356 HOH HOH . K 6 HOH A 190 514 357 HOH HOH . K 6 HOH A 191 515 358 HOH HOH . K 6 HOH A 192 516 360 HOH HOH . K 6 HOH A 193 517 364 HOH HOH . K 6 HOH A 194 518 365 HOH HOH . K 6 HOH A 195 519 368 HOH HOH . K 6 HOH A 196 520 371 HOH HOH . K 6 HOH A 197 521 372 HOH HOH . K 6 HOH A 198 522 376 HOH HOH . K 6 HOH A 199 523 379 HOH HOH . K 6 HOH A 200 524 382 HOH HOH . K 6 HOH A 201 525 384 HOH HOH . K 6 HOH A 202 526 385 HOH HOH . K 6 HOH A 203 527 388 HOH HOH . K 6 HOH A 204 528 389 HOH HOH . K 6 HOH A 205 529 390 HOH HOH . K 6 HOH A 206 530 391 HOH HOH . K 6 HOH A 207 531 393 HOH HOH . K 6 HOH A 208 532 395 HOH HOH . K 6 HOH A 209 533 398 HOH HOH . K 6 HOH A 210 534 401 HOH HOH . K 6 HOH A 211 535 402 HOH HOH . K 6 HOH A 212 536 403 HOH HOH . K 6 HOH A 213 537 404 HOH HOH . K 6 HOH A 214 538 405 HOH HOH . K 6 HOH A 215 539 407 HOH HOH . K 6 HOH A 216 540 409 HOH HOH . K 6 HOH A 217 541 410 HOH HOH . K 6 HOH A 218 542 413 HOH HOH . K 6 HOH A 219 543 415 HOH HOH . K 6 HOH A 220 544 416 HOH HOH . K 6 HOH A 221 545 420 HOH HOH . K 6 HOH A 222 546 422 HOH HOH . K 6 HOH A 223 547 425 HOH HOH . K 6 HOH A 224 548 426 HOH HOH . K 6 HOH A 225 549 428 HOH HOH . K 6 HOH A 226 550 429 HOH HOH . K 6 HOH A 227 551 430 HOH HOH . K 6 HOH A 228 552 431 HOH HOH . K 6 HOH A 229 553 432 HOH HOH . K 6 HOH A 230 554 433 HOH HOH . K 6 HOH A 231 555 434 HOH HOH . K 6 HOH A 232 556 435 HOH HOH . K 6 HOH A 233 557 437 HOH HOH . K 6 HOH A 234 558 438 HOH HOH . K 6 HOH A 235 559 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -26.009 -32.244 -2.731 1 30.54 ? C1 EDO 815 A 1 HETATM 2 O O1 EDO . . . H 4 -25.892 -31.116 -3.619 1 30.98 ? O1 EDO 815 A 1 HETATM 3 C C2 EDO . . . H 4 -27.143 -33.154 -3.175 1 30.15 ? C2 EDO 815 A 1 HETATM 4 O O2 EDO . . . H 4 -28.412 -32.525 -2.895 1 26.58 ? O2 EDO 815 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #