data_3QTT # _model_server_result.job_id MPzENByh-kybEUHS2xHtgw _model_server_result.datetime_utc '2024-11-14 19:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qtt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":271}' # _entry.id 3QTT # _exptl.entry_id 3QTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QTT _cell.length_a 47.147 _cell.length_b 47.147 _cell.length_c 257.661 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 1 2 A,C,D,E,F,J 2 1 B,G,H,I,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -y+1,x,z-1/4 0 -1 0 1 0 0 0 0 1 47.147 0 -64.41525 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 3 1_555 A N MSE 4 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 4 A MSE 4 1_555 A N ILE 5 A ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C THR 31 A THR 31 1_555 A N MSE 32 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 32 A MSE 32 1_555 A N GLY 33 A GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLY 130 A GLY 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C MSE 131 A MSE 131 1_555 A N LEU 132 A LEU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C VAL 157 A VAL 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C VAL 157 A VAL 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 158 A MSE 158 1_555 A N LEU 159 A LEU 159 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C MSE 158 A MSE 158 1_555 A N LEU 159 A LEU 159 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C ALA 3 B ALA 3 1_555 B N MSE 4 B MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 4 B MSE 4 1_555 B N ILE 5 B ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C THR 31 B THR 31 1_555 B N MSE 32 B MSE 32 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C THR 31 B THR 31 1_555 B N MSE 32 B MSE 32 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 B C MSE 32 B MSE 32 1_555 B N GLY 33 B GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale16 B C GLY 130 B GLY 130 1_555 B N MSE 131 B MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C MSE 131 B MSE 131 1_555 B N LEU 132 B LEU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C VAL 157 B VAL 157 1_555 B N MSE 158 B MSE 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C VAL 157 B VAL 157 1_555 B N MSE 158 B MSE 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C MSE 158 B MSE 158 1_555 B N LEU 159 B LEU 159 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C MSE 158 B MSE 158 1_555 B N LEU 159 B LEU 159 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OH TYR 73 A TYR 73 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc2 A O GLY 33 A GLY 33 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc3 C O1A ANP . A ANP 271 1_555 E MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QTT _atom_sites.fract_transf_matrix[1][1] 0.02121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 271 271 ANP ANP . D 3 PRO A 1 274 274 PRO PRO . E 4 MG A 1 273 273 MG MG . F 5 BAL A 1 275 275 BAL BAL . G 3 PRO B 1 272 272 PRO PRO . H 2 ANP B 1 271 271 ANP ANP . I 5 BAL B 1 275 275 BAL BAL . J 6 HOH A 1 276 3 HOH HOH . J 6 HOH A 2 277 4 HOH HOH . J 6 HOH A 3 278 6 HOH HOH . J 6 HOH A 4 279 9 HOH HOH . J 6 HOH A 5 280 10 HOH HOH . J 6 HOH A 6 281 12 HOH HOH . J 6 HOH A 7 282 13 HOH HOH . J 6 HOH A 8 283 14 HOH HOH . J 6 HOH A 9 284 17 HOH HOH . J 6 HOH A 10 285 19 HOH HOH . J 6 HOH A 11 286 20 HOH HOH . J 6 HOH A 12 287 21 HOH HOH . J 6 HOH A 13 288 22 HOH HOH . J 6 HOH A 14 289 23 HOH HOH . J 6 HOH A 15 290 24 HOH HOH . J 6 HOH A 16 291 40 HOH HOH . J 6 HOH A 17 292 41 HOH HOH . J 6 HOH A 18 293 42 HOH HOH . J 6 HOH A 19 294 43 HOH HOH . J 6 HOH A 20 295 44 HOH HOH . J 6 HOH A 21 296 45 HOH HOH . J 6 HOH A 22 297 46 HOH HOH . J 6 HOH A 23 298 47 HOH HOH . J 6 HOH A 24 299 48 HOH HOH . J 6 HOH A 25 300 49 HOH HOH . J 6 HOH A 26 301 55 HOH HOH . J 6 HOH A 27 302 56 HOH HOH . J 6 HOH A 28 303 57 HOH HOH . J 6 HOH A 29 304 58 HOH HOH . J 6 HOH A 30 305 61 HOH HOH . J 6 HOH A 31 306 62 HOH HOH . J 6 HOH A 32 307 63 HOH HOH . J 6 HOH A 33 308 64 HOH HOH . J 6 HOH A 34 309 65 HOH HOH . J 6 HOH A 35 310 66 HOH HOH . J 6 HOH A 36 311 67 HOH HOH . J 6 HOH A 37 312 68 HOH HOH . J 6 HOH A 38 313 69 HOH HOH . J 6 HOH A 39 314 70 HOH HOH . J 6 HOH A 40 315 71 HOH HOH . J 6 HOH A 41 316 72 HOH HOH . J 6 HOH A 42 317 73 HOH HOH . J 6 HOH A 43 318 74 HOH HOH . J 6 HOH A 44 319 75 HOH HOH . J 6 HOH A 45 320 76 HOH HOH . J 6 HOH A 46 321 77 HOH HOH . J 6 HOH A 47 322 89 HOH HOH . J 6 HOH A 48 323 90 HOH HOH . J 6 HOH A 49 324 91 HOH HOH . J 6 HOH A 50 325 92 HOH HOH . J 6 HOH A 51 326 93 HOH HOH . J 6 HOH A 52 327 96 HOH HOH . J 6 HOH A 53 328 97 HOH HOH . K 6 HOH B 1 273 1 HOH HOH . K 6 HOH B 2 274 2 HOH HOH . K 6 HOH B 3 276 5 HOH HOH . K 6 HOH B 4 277 7 HOH HOH . K 6 HOH B 5 278 8 HOH HOH . K 6 HOH B 6 279 11 HOH HOH . K 6 HOH B 7 280 15 HOH HOH . K 6 HOH B 8 281 16 HOH HOH . K 6 HOH B 9 282 18 HOH HOH . K 6 HOH B 10 283 25 HOH HOH . K 6 HOH B 11 284 26 HOH HOH . K 6 HOH B 12 285 27 HOH HOH . K 6 HOH B 13 286 28 HOH HOH . K 6 HOH B 14 287 29 HOH HOH . K 6 HOH B 15 288 30 HOH HOH . K 6 HOH B 16 289 31 HOH HOH . K 6 HOH B 17 290 32 HOH HOH . K 6 HOH B 18 291 33 HOH HOH . K 6 HOH B 19 292 34 HOH HOH . K 6 HOH B 20 293 35 HOH HOH . K 6 HOH B 21 294 36 HOH HOH . K 6 HOH B 22 295 37 HOH HOH . K 6 HOH B 23 296 38 HOH HOH . K 6 HOH B 24 297 39 HOH HOH . K 6 HOH B 25 298 50 HOH HOH . K 6 HOH B 26 299 51 HOH HOH . K 6 HOH B 27 300 52 HOH HOH . K 6 HOH B 28 301 53 HOH HOH . K 6 HOH B 29 302 54 HOH HOH . K 6 HOH B 30 303 59 HOH HOH . K 6 HOH B 31 304 60 HOH HOH . K 6 HOH B 32 305 78 HOH HOH . K 6 HOH B 33 306 79 HOH HOH . K 6 HOH B 34 307 80 HOH HOH . K 6 HOH B 35 308 81 HOH HOH . K 6 HOH B 36 309 82 HOH HOH . K 6 HOH B 37 310 83 HOH HOH . K 6 HOH B 38 311 84 HOH HOH . K 6 HOH B 39 312 85 HOH HOH . K 6 HOH B 40 313 86 HOH HOH . K 6 HOH B 41 314 87 HOH HOH . K 6 HOH B 42 315 88 HOH HOH . K 6 HOH B 43 316 94 HOH HOH . K 6 HOH B 44 317 95 HOH HOH . K 6 HOH B 45 318 98 HOH HOH . K 6 HOH B 46 319 99 HOH HOH . K 6 HOH B 47 320 100 HOH HOH . K 6 HOH B 48 321 101 HOH HOH . K 6 HOH B 49 322 102 HOH HOH . K 6 HOH B 50 323 103 HOH HOH . K 6 HOH B 51 324 104 HOH HOH . K 6 HOH B 52 325 105 HOH HOH . K 6 HOH B 53 326 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 0.388 35.591 136.78 1 267.57 ? PG ANP 271 A 1 HETATM 2 O O1G ANP . . . C 2 -0.223 35.047 138.002 1 267.12 ? O1G ANP 271 A 1 HETATM 3 O O2G ANP . . . C 2 1.344 34.544 136.092 1 60.15 ? O2G ANP 271 A 1 HETATM 4 O O3G ANP . . . C 2 1.229 36.879 137.059 1 60.47 ? O3G ANP 271 A 1 HETATM 5 P PB ANP . . . C 2 -0.423 34.521 134.591 1 217.83 ? PB ANP 271 A 1 HETATM 6 O O1B ANP . . . C 2 -0.122 33.11 135.235 1 186.21 ? O1B ANP 271 A 1 HETATM 7 O O2B ANP . . . C 2 -1.667 34.318 133.731 1 217.24 ? O2B ANP 271 A 1 HETATM 8 N N3B ANP . . . C 2 -0.721 35.819 135.655 1 238.72 ? N3B ANP 271 A 1 HETATM 9 P PA ANP . . . C 2 2.363 34.903 133.687 1 53.14 ? PA ANP 271 A 1 HETATM 10 O O1A ANP . . . C 2 3.039 36.182 133.731 1 46.57 ? O1A ANP 271 A 1 HETATM 11 O O2A ANP . . . C 2 2.566 34.418 132.265 1 76.98 ? O2A ANP 271 A 1 HETATM 12 O O3A ANP . . . C 2 0.733 34.975 133.659 1 240.58 ? O3A ANP 271 A 1 HETATM 13 O O5' ANP . . . C 2 3.212 33.881 134.516 1 63.99 ? O5' ANP 271 A 1 HETATM 14 C C5' ANP . . . C 2 4.5 33.665 133.993 1 53.73 ? C5' ANP 271 A 1 HETATM 15 C C4' ANP . . . C 2 5.393 32.623 134.506 1 41.42 ? C4' ANP 271 A 1 HETATM 16 O O4' ANP . . . C 2 5.621 32.934 135.826 1 56.75 ? O4' ANP 271 A 1 HETATM 17 C C3' ANP . . . C 2 4.705 31.293 134.503 1 49.76 ? C3' ANP 271 A 1 HETATM 18 O O3' ANP . . . C 2 5.6 30.225 134.335 1 46.1 ? O3' ANP 271 A 1 HETATM 19 C C2' ANP . . . C 2 4.032 31.298 135.753 1 45.33 ? C2' ANP 271 A 1 HETATM 20 O O2' ANP . . . C 2 3.751 30.021 136.214 1 38.01 ? O2' ANP 271 A 1 HETATM 21 C C1' ANP . . . C 2 5.034 31.911 136.64 1 54.05 ? C1' ANP 271 A 1 HETATM 22 N N9 ANP . . . C 2 4.451 32.399 137.898 1 56.14 ? N9 ANP 271 A 1 HETATM 23 C C8 ANP . . . C 2 3.402 33.198 138.034 1 54.35 ? C8 ANP 271 A 1 HETATM 24 N N7 ANP . . . C 2 3.125 33.373 139.328 1 53.01 ? N7 ANP 271 A 1 HETATM 25 C C5 ANP . . . C 2 4.021 32.66 140.021 1 61.5 ? C5 ANP 271 A 1 HETATM 26 C C6 ANP . . . C 2 4.229 32.492 141.391 1 64.19 ? C6 ANP 271 A 1 HETATM 27 N N6 ANP . . . C 2 3.403 33.128 142.329 1 64.83 ? N6 ANP 271 A 1 HETATM 28 N N1 ANP . . . C 2 5.237 31.702 141.771 1 64.33 ? N1 ANP 271 A 1 HETATM 29 C C2 ANP . . . C 2 6.025 31.094 140.874 1 61.46 ? C2 ANP 271 A 1 HETATM 30 N N3 ANP . . . C 2 5.859 31.244 139.547 1 55.3 ? N3 ANP 271 A 1 HETATM 31 C C4 ANP . . . C 2 4.867 32.024 139.111 1 59.47 ? C4 ANP 271 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #